Wall clock time and date at job start Tue Mar 31 2020 12:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53011 * 109.46645 * 2 1 4 4 C 1.52999 * 109.46643 * 180.02562 * 3 2 1 5 5 H 1.08994 * 110.05923 * 54.06144 * 4 3 2 6 6 C 1.54267 * 110.03368 * 292.63700 * 4 3 2 7 7 C 1.54887 * 104.19744 * 217.10912 * 6 4 3 8 8 C 1.54968 * 102.77847 * 37.91900 * 7 6 4 9 9 C 1.53878 * 110.02792 * 175.47517 * 4 3 2 10 10 H 1.09002 * 110.03234 * 238.61456 * 9 4 3 11 11 C 1.50700 * 110.03451 * 359.97438 * 9 4 3 12 12 O 1.21281 * 120.00373 * 85.28221 * 11 9 4 13 13 N 1.34774 * 119.99697 * 265.28526 * 11 9 4 14 14 C 1.39927 * 120.00009 * 185.18364 * 13 11 9 15 15 C 1.38967 * 120.03381 * 34.29785 * 14 13 11 16 16 C 1.38153 * 120.06779 * 179.74835 * 15 14 13 17 17 C 1.38171 * 120.13966 * 0.54873 * 16 15 14 18 18 C 1.38920 * 120.06584 * 359.44596 * 17 16 15 19 19 O 1.35746 * 120.03064 * 180.25549 * 18 17 16 20 20 C 1.34828 * 116.99899 * 174.37523 * 19 18 17 21 21 H 1.07992 * 119.99999 * 5.06686 * 20 19 18 22 22 C 1.38655 * 119.99904 * 185.06944 * 20 19 18 23 23 N 1.31562 * 120.00290 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99774 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46899 * 90.00396 * 24 22 20 26 26 H 1.48507 * 109.47209 * 209.99986 * 24 22 20 27 27 H 1.48499 * 109.47559 * 330.00010 * 24 22 20 28 28 C 1.38712 * 120.04006 * 214.31483 * 14 13 11 29 29 H 1.09007 * 109.46729 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47263 * 299.99619 * 1 2 3 31 31 H 1.08997 * 109.47576 * 60.00331 * 1 2 3 32 32 H 1.08997 * 109.47263 * 240.00381 * 2 1 3 33 33 H 1.08997 * 109.47576 * 119.99669 * 2 1 3 34 34 H 1.08997 * 109.46979 * 60.00207 * 3 2 1 35 35 H 1.09005 * 109.46705 * 299.99832 * 3 2 1 36 36 H 1.09002 * 110.48140 * 335.78995 * 6 4 3 37 37 H 1.09000 * 110.48575 * 98.29548 * 6 4 3 38 38 H 1.09000 * 110.75220 * 156.25817 * 7 6 4 39 39 H 1.08991 * 110.75830 * 279.62652 * 7 6 4 40 40 H 1.08996 * 110.53084 * 203.43030 * 8 7 6 41 41 H 1.09000 * 110.47901 * 80.76007 * 8 7 6 42 42 H 0.97000 * 120.00851 * 5.18688 * 13 11 9 43 43 H 1.08001 * 119.96227 * 0.02562 * 15 14 13 44 44 H 1.08000 * 119.93161 * 180.26920 * 16 15 14 45 45 H 1.07999 * 119.96927 * 179.72973 * 17 16 15 46 46 H 0.96997 * 120.00010 * 180.02562 * 23 22 20 47 47 H 1.08003 * 120.06420 * 359.95232 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9434 0.8419 -0.8298 6 6 4.0989 0.8846 1.3367 7 6 5.3542 1.7412 1.6358 8 6 4.9285 3.1521 1.1567 9 6 4.0969 2.8839 -0.1147 10 1 4.7254 2.9827 -0.9997 11 6 2.9435 3.8508 -0.1912 12 8 2.4237 4.2565 0.8267 13 7 2.4895 4.2645 -1.3909 14 6 1.4922 5.2434 -1.4619 15 6 1.4493 6.2624 -0.5179 16 6 0.4681 7.2322 -0.5904 17 6 -0.4802 7.1861 -1.5943 18 6 -0.4427 6.1701 -2.5410 19 8 -1.3716 6.1283 -3.5300 20 6 -1.2105 5.1869 -4.4816 21 1 -0.4191 4.4578 -4.3914 22 6 -2.0611 5.1550 -5.5761 23 7 -3.0250 6.0436 -5.6864 24 14 -1.8376 3.8511 -6.8950 25 1 -2.6430 2.6527 -6.5477 26 1 -2.2887 4.3884 -8.2039 27 1 -0.4035 3.4756 -6.9819 28 6 0.5451 5.1976 -2.4743 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6765 1.9564 -0.8901 36 1 3.3550 1.0103 2.1234 37 1 4.3680 -0.1664 1.2318 38 1 5.5735 1.7455 2.7035 39 1 6.2113 1.3827 1.0659 40 1 5.8045 3.7557 0.9192 41 1 4.3188 3.6444 1.9144 42 1 2.8540 3.8837 -2.2051 43 1 2.1865 6.2987 0.2705 44 1 0.4394 8.0256 0.1418 45 1 -1.2487 7.9432 -1.6457 46 1 -3.6202 6.0210 -6.4519 47 1 0.5766 4.4070 -3.2093 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294534004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:00 Heat of formation + Delta-G solvation = -63.742050 kcal Electronic energy + Delta-G solvation = -26924.640975 eV Core-core repulsion = 23264.957193 eV Total energy + Delta-G solvation = -3659.683783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.77771 -39.02421 -37.76742 -36.26076 -34.55282 -34.16275 -32.24572 -30.33734 -29.63311 -29.07273 -28.18091 -25.36293 -25.20343 -22.89850 -21.84826 -21.77052 -20.68919 -20.60746 -19.25737 -17.94276 -17.51576 -16.80372 -16.13683 -15.54110 -15.18747 -15.07102 -15.02170 -14.67658 -14.16570 -14.02546 -13.72772 -13.64345 -13.54901 -13.03287 -12.98803 -12.59579 -12.36662 -12.06877 -11.86131 -11.75039 -11.59142 -11.40261 -11.26395 -11.13782 -11.03229 -10.98187 -10.86790 -10.79426 -10.73834 -10.54776 -10.48861 -10.46068 -9.82518 -9.52122 -9.34343 -8.81066 -7.72156 -7.15174 -6.45370 -4.05196 1.98181 2.37873 2.88294 3.10876 3.11627 3.16040 3.29202 3.95046 4.25585 4.36323 4.46831 4.60653 4.84599 4.96355 5.03863 5.09684 5.11689 5.21395 5.27789 5.28814 5.33802 5.39625 5.43574 5.55979 5.67563 5.71236 5.77895 5.78954 5.80857 5.93382 5.98334 5.98965 6.01584 6.08716 6.15168 6.19297 6.26716 6.27036 6.29682 6.35950 6.64525 6.98290 7.00504 7.12859 7.31299 7.42442 7.72653 7.82266 7.98939 8.36643 9.00021 9.70704 10.72740 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012967 B = 0.003734 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.803754 B = 7497.527383 C = 8780.058847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.129 4.129 4 C -0.076 4.076 5 H 0.079 0.921 6 C -0.117 4.117 7 C -0.123 4.123 8 C -0.113 4.113 9 C -0.111 4.111 10 H 0.090 0.910 11 C 0.524 3.476 12 O -0.519 6.519 13 N -0.672 5.672 14 C 0.182 3.818 15 C -0.205 4.205 16 C -0.063 4.063 17 C -0.201 4.201 18 C 0.169 3.831 19 O -0.177 6.177 20 C -0.392 4.392 21 H 0.090 0.910 22 C 0.040 3.960 23 N -0.862 5.862 24 Si 0.939 3.061 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.268 1.268 28 C -0.257 4.257 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.405 0.595 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.270 0.730 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.401 -10.461 10.055 21.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.166 4.166 4 C -0.095 4.095 5 H 0.098 0.902 6 C -0.154 4.154 7 C -0.160 4.160 8 C -0.150 4.150 9 C -0.132 4.132 10 H 0.108 0.892 11 C 0.311 3.689 12 O -0.394 6.394 13 N -0.317 5.317 14 C 0.089 3.911 15 C -0.226 4.226 16 C -0.082 4.082 17 C -0.221 4.221 18 C 0.114 3.886 19 O -0.080 6.080 20 C -0.468 4.468 21 H 0.107 0.893 22 C -0.164 4.164 23 N -0.497 5.497 24 Si 0.764 3.236 25 H -0.199 1.199 26 H -0.202 1.202 27 H -0.193 1.193 28 C -0.278 4.278 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.240 0.760 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.136 0.864 46 H 0.080 0.920 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 14.671 -9.997 10.580 20.667 hybrid contribution 0.257 -0.891 -1.279 1.580 sum 14.928 -10.888 9.301 20.686 Atomic orbital electron populations 1.21782 0.95751 1.01320 1.02389 1.21487 0.96048 0.96486 1.01562 1.21978 0.93850 0.97415 1.03397 1.21724 0.95929 0.93100 0.98767 0.90244 1.22445 0.97335 0.98895 0.96767 1.22488 0.97614 0.94930 1.01011 1.22382 0.98907 0.97570 0.96175 1.22068 0.95285 0.94786 1.01107 0.89194 1.20482 0.84262 0.80937 0.83188 1.90695 1.57844 1.56491 1.34353 1.43654 1.38945 1.40113 1.08941 1.17411 0.88930 0.88375 0.96389 1.20508 1.03347 0.96430 1.02289 1.20525 0.93816 0.97345 0.96550 1.20251 1.03238 1.00629 0.97971 1.19071 0.87828 0.92269 0.89384 1.84004 1.41512 1.51704 1.30787 1.21265 1.17216 1.08650 0.99713 0.89275 1.25265 0.95400 0.98168 0.97601 1.70037 1.16287 1.33609 1.29812 0.85746 0.78875 0.79565 0.79419 1.19900 1.20226 1.19279 1.20812 0.98836 1.04264 1.03912 0.92968 0.92724 0.92407 0.92295 0.92144 0.90688 0.91520 0.91107 0.91559 0.91336 0.91538 0.91427 0.89514 0.76004 0.86495 0.86684 0.86427 0.92026 0.85351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.91 37.16 0.37 -1.39 16 2 C -0.12 -1.22 5.78 -26.73 -0.15 -1.37 16 3 C -0.13 -1.52 3.40 -26.73 -0.09 -1.61 16 4 C -0.08 -0.73 2.93 -89.50 -0.26 -0.99 16 5 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 6 C -0.12 -0.99 5.51 -25.07 -0.14 -1.13 16 7 C -0.12 -0.96 6.91 -24.70 -0.17 -1.14 16 8 C -0.11 -1.09 6.32 -25.03 -0.16 -1.25 16 9 C -0.11 -1.14 3.29 -90.65 -0.30 -1.44 16 10 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 11 C 0.52 7.50 4.41 -10.99 -0.05 7.45 16 12 O -0.52 -9.20 12.72 5.56 0.07 -9.13 16 13 N -0.67 -10.04 4.86 -9.88 -0.05 -10.09 16 14 C 0.18 3.47 6.26 -83.72 -0.52 2.95 16 15 C -0.20 -3.95 8.65 -39.34 -0.34 -4.29 16 16 C -0.06 -1.21 10.03 -39.64 -0.40 -1.61 16 17 C -0.20 -4.36 9.99 -39.35 -0.39 -4.75 16 18 C 0.17 4.10 6.64 -39.13 -0.26 3.84 16 19 O -0.18 -5.03 9.76 0.06 0.00 -5.03 16 20 C -0.39 -10.85 9.49 30.89 0.29 -10.56 16 21 H 0.09 2.27 5.20 -52.49 -0.27 1.99 16 22 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 23 N -0.86 -25.20 13.67 55.48 0.76 -24.44 16 24 Si 0.94 20.27 29.55 -169.99 -5.02 15.25 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 28 C -0.26 -5.55 9.08 -39.21 -0.36 -5.91 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.56 7.49 -51.93 -0.39 0.17 16 34 H 0.07 1.07 7.04 -51.93 -0.37 0.70 16 35 H 0.07 0.90 6.90 -51.93 -0.36 0.54 16 36 H 0.07 0.68 7.77 -51.93 -0.40 0.27 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.03 6.91 -51.93 -0.36 0.67 16 42 H 0.40 4.89 8.82 -40.82 -0.36 4.53 16 43 H 0.12 2.20 6.48 -52.49 -0.34 1.86 16 44 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 45 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 46 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.13 2.73 5.64 -52.48 -0.30 2.43 16 LS Contribution 374.07 15.07 5.64 5.64 Total: -1.00 -31.88 374.07 -8.98 -40.86 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -7.35 Total: 9.15 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -3.03 Total: -22.21 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.71 Total: -34.53 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.07 Total: -14.16 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.88 -8.98 -40.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294534004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.879 kcal (2) G-P(sol) polarization free energy of solvation -31.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds