Wall clock time and date at job start Tue Mar 31 2020 12:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53011 * 109.46645 * 2 1 4 4 C 1.52999 * 109.46643 * 180.02562 * 3 2 1 5 5 H 1.08994 * 110.05923 * 54.06144 * 4 3 2 6 6 C 1.54267 * 110.03368 * 292.63700 * 4 3 2 7 7 C 1.54887 * 104.19744 * 217.10912 * 6 4 3 8 8 C 1.54968 * 102.77847 * 37.91900 * 7 6 4 9 9 C 1.53878 * 110.02792 * 175.47517 * 4 3 2 10 10 H 1.09002 * 110.03234 * 238.61456 * 9 4 3 11 11 C 1.50700 * 110.03451 * 359.97438 * 9 4 3 12 12 O 1.21281 * 120.00373 * 85.28221 * 11 9 4 13 13 N 1.34774 * 119.99697 * 265.28526 * 11 9 4 14 14 C 1.39927 * 120.00009 * 185.18364 * 13 11 9 15 15 C 1.38967 * 120.03381 * 34.29785 * 14 13 11 16 16 C 1.38153 * 120.06779 * 179.74835 * 15 14 13 17 17 C 1.38171 * 120.13966 * 0.54873 * 16 15 14 18 18 C 1.38920 * 120.06584 * 359.44596 * 17 16 15 19 19 O 1.35746 * 120.03064 * 180.25549 * 18 17 16 20 20 C 1.34828 * 116.99899 * 174.37523 * 19 18 17 21 21 H 1.07992 * 119.99999 * 5.06686 * 20 19 18 22 22 C 1.38655 * 119.99904 * 185.06944 * 20 19 18 23 23 N 1.31562 * 120.00290 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99774 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46899 * 90.00396 * 24 22 20 26 26 H 1.48507 * 109.47209 * 209.99986 * 24 22 20 27 27 H 1.48499 * 109.47559 * 330.00010 * 24 22 20 28 28 C 1.38712 * 120.04006 * 214.31483 * 14 13 11 29 29 H 1.09007 * 109.46729 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47263 * 299.99619 * 1 2 3 31 31 H 1.08997 * 109.47576 * 60.00331 * 1 2 3 32 32 H 1.08997 * 109.47263 * 240.00381 * 2 1 3 33 33 H 1.08997 * 109.47576 * 119.99669 * 2 1 3 34 34 H 1.08997 * 109.46979 * 60.00207 * 3 2 1 35 35 H 1.09005 * 109.46705 * 299.99832 * 3 2 1 36 36 H 1.09002 * 110.48140 * 335.78995 * 6 4 3 37 37 H 1.09000 * 110.48575 * 98.29548 * 6 4 3 38 38 H 1.09000 * 110.75220 * 156.25817 * 7 6 4 39 39 H 1.08991 * 110.75830 * 279.62652 * 7 6 4 40 40 H 1.08996 * 110.53084 * 203.43030 * 8 7 6 41 41 H 1.09000 * 110.47901 * 80.76007 * 8 7 6 42 42 H 0.97000 * 120.00851 * 5.18688 * 13 11 9 43 43 H 1.08001 * 119.96227 * 0.02562 * 15 14 13 44 44 H 1.08000 * 119.93161 * 180.26920 * 16 15 14 45 45 H 1.07999 * 119.96927 * 179.72973 * 17 16 15 46 46 H 0.96997 * 120.00010 * 180.02562 * 23 22 20 47 47 H 1.08003 * 120.06420 * 359.95232 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9434 0.8419 -0.8298 6 6 4.0989 0.8846 1.3367 7 6 5.3542 1.7412 1.6358 8 6 4.9285 3.1521 1.1567 9 6 4.0969 2.8839 -0.1147 10 1 4.7254 2.9827 -0.9997 11 6 2.9435 3.8508 -0.1912 12 8 2.4237 4.2565 0.8267 13 7 2.4895 4.2645 -1.3909 14 6 1.4922 5.2434 -1.4619 15 6 1.4493 6.2624 -0.5179 16 6 0.4681 7.2322 -0.5904 17 6 -0.4802 7.1861 -1.5943 18 6 -0.4427 6.1701 -2.5410 19 8 -1.3716 6.1283 -3.5300 20 6 -1.2105 5.1869 -4.4816 21 1 -0.4191 4.4578 -4.3914 22 6 -2.0611 5.1550 -5.5761 23 7 -3.0250 6.0436 -5.6864 24 14 -1.8376 3.8511 -6.8950 25 1 -2.6430 2.6527 -6.5477 26 1 -2.2887 4.3884 -8.2039 27 1 -0.4035 3.4756 -6.9819 28 6 0.5451 5.1976 -2.4743 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6765 1.9564 -0.8901 36 1 3.3550 1.0103 2.1234 37 1 4.3680 -0.1664 1.2318 38 1 5.5735 1.7455 2.7035 39 1 6.2113 1.3827 1.0659 40 1 5.8045 3.7557 0.9192 41 1 4.3188 3.6444 1.9144 42 1 2.8540 3.8837 -2.2051 43 1 2.1865 6.2987 0.2705 44 1 0.4394 8.0256 0.1418 45 1 -1.2487 7.9432 -1.6457 46 1 -3.6202 6.0210 -6.4519 47 1 0.5766 4.4070 -3.2093 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294534004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:59 Heat of formation + Delta-G solvation = -81.806213 kcal Electronic energy + Delta-G solvation = -26925.424296 eV Core-core repulsion = 23264.957193 eV Total energy + Delta-G solvation = -3660.467104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.95750 -40.64489 -39.01317 -37.81533 -35.68071 -35.32183 -34.24233 -31.48302 -30.74956 -30.45181 -29.51895 -27.31405 -26.10588 -24.19434 -23.51883 -22.63549 -22.06142 -21.37802 -20.49264 -19.65919 -19.15564 -17.93599 -17.30711 -16.85359 -16.77423 -16.33805 -16.09574 -15.97863 -15.64892 -15.53827 -15.41996 -14.68524 -14.57348 -14.51916 -14.24838 -13.89349 -13.60793 -13.47574 -13.21303 -12.94999 -12.79904 -12.70327 -12.63655 -12.42409 -12.26160 -12.12130 -11.94910 -11.78078 -11.69434 -11.52399 -11.42013 -11.39979 -11.35715 -11.15650 -10.79646 -10.63261 -9.36626 -8.88528 -8.47150 -6.16252 0.39100 0.67712 1.34954 1.44061 1.52534 1.64577 2.07057 2.17437 2.82615 3.15339 3.42550 3.48120 3.61049 3.66619 3.92308 4.08548 4.11254 4.26898 4.29662 4.33769 4.42992 4.43959 4.51738 4.59836 4.61694 4.62727 4.69221 4.74915 4.75697 4.90136 4.96741 5.00384 5.00801 5.08073 5.10184 5.16472 5.24428 5.25159 5.29828 5.38222 5.40700 5.43723 5.49663 5.55601 5.65067 5.65739 6.00868 6.16059 6.48815 6.97004 7.16425 7.76411 8.75901 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012967 B = 0.003734 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.803754 B = 7497.527383 C = 8780.058847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.113 4.113 3 C -0.126 4.126 4 C -0.073 4.073 5 H 0.106 0.894 6 C -0.116 4.116 7 C -0.115 4.115 8 C -0.114 4.114 9 C -0.106 4.106 10 H 0.121 0.879 11 C 0.524 3.476 12 O -0.555 6.555 13 N -0.666 5.666 14 C 0.190 3.810 15 C -0.200 4.200 16 C -0.052 4.052 17 C -0.216 4.216 18 C 0.135 3.865 19 O -0.227 6.227 20 C -0.414 4.414 21 H 0.103 0.897 22 C -0.021 4.021 23 N -0.920 5.920 24 Si 1.017 2.983 25 H -0.265 1.265 26 H -0.272 1.272 27 H -0.249 1.249 28 C -0.261 4.261 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.420 0.580 43 H 0.128 0.872 44 H 0.153 0.847 45 H 0.118 0.882 46 H 0.273 0.727 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.873 -12.901 10.371 25.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.151 4.151 3 C -0.163 4.163 4 C -0.091 4.091 5 H 0.124 0.876 6 C -0.154 4.154 7 C -0.153 4.153 8 C -0.152 4.152 9 C -0.127 4.127 10 H 0.139 0.861 11 C 0.314 3.686 12 O -0.432 6.432 13 N -0.311 5.311 14 C 0.095 3.905 15 C -0.221 4.221 16 C -0.071 4.071 17 C -0.236 4.236 18 C 0.084 3.916 19 O -0.133 6.133 20 C -0.490 4.490 21 H 0.120 0.880 22 C -0.219 4.219 23 N -0.558 5.558 24 Si 0.836 3.164 25 H -0.190 1.190 26 H -0.196 1.196 27 H -0.172 1.172 28 C -0.282 4.282 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.258 0.742 43 H 0.146 0.854 44 H 0.170 0.830 45 H 0.136 0.864 46 H 0.082 0.918 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 18.204 -12.453 10.932 24.616 hybrid contribution -0.703 -0.071 -1.095 1.304 sum 17.500 -12.524 9.836 23.662 Atomic orbital electron populations 1.21811 0.97024 1.01900 1.00793 1.21473 0.94899 0.95663 1.03016 1.21901 0.95876 0.97867 1.00699 1.21789 0.93912 0.92914 1.00505 0.87594 1.22446 0.97198 1.00260 0.95451 1.22482 0.97851 0.93214 1.01709 1.22400 0.98809 0.98991 0.95033 1.22207 0.93769 0.93814 1.02889 0.86112 1.21316 0.84576 0.80684 0.82044 1.90680 1.59129 1.57864 1.35541 1.43698 1.37853 1.39267 1.10318 1.17463 0.88948 0.89000 0.95046 1.20819 1.03213 0.96029 1.02052 1.20910 0.92271 0.97916 0.95973 1.20473 1.04280 1.00437 0.98427 1.19593 0.88513 0.94020 0.89472 1.83973 1.43856 1.53076 1.32373 1.21806 1.17939 1.09081 1.00169 0.88013 1.26589 0.94698 1.00684 0.99919 1.70187 1.17999 1.36445 1.31167 0.84615 0.79877 0.76219 0.75691 1.18987 1.19632 1.17215 1.20836 0.98933 1.03709 1.04756 0.91301 0.94004 0.94331 0.90669 0.90646 0.93918 0.93656 0.92895 0.89440 0.90861 0.89335 0.89925 0.92352 0.74165 0.85369 0.82967 0.86374 0.91816 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 9.91 71.98 0.71 -2.82 16 2 C -0.11 -2.12 5.78 30.60 0.18 -1.94 16 3 C -0.13 -2.83 3.40 30.60 0.10 -2.73 16 4 C -0.07 -1.15 2.93 -10.07 -0.03 -1.18 16 5 H 0.11 1.21 8.14 -2.39 -0.02 1.20 16 6 C -0.12 -1.60 5.51 31.67 0.17 -1.43 16 7 C -0.12 -1.39 6.91 31.91 0.22 -1.16 16 8 C -0.11 -1.91 6.32 31.70 0.20 -1.71 16 9 C -0.11 -1.86 3.29 -10.81 -0.04 -1.90 16 10 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 11 C 0.52 14.24 4.41 87.66 0.39 14.63 16 12 O -0.56 -19.43 12.72 -3.03 -0.04 -19.47 16 13 N -0.67 -18.97 4.86 -303.56 -1.47 -20.45 16 14 C 0.19 7.15 6.26 38.14 0.24 7.39 16 15 C -0.20 -7.51 8.65 22.42 0.19 -7.31 16 16 C -0.05 -1.94 10.03 22.23 0.22 -1.72 16 17 C -0.22 -9.61 9.99 22.42 0.22 -9.39 16 18 C 0.14 6.86 6.64 22.56 0.15 7.01 16 19 O -0.23 -13.66 9.76 -22.68 -0.22 -13.88 16 20 C -0.41 -23.86 9.49 67.92 0.64 -23.22 16 21 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 22 C -0.02 -1.20 5.49 84.83 0.47 -0.73 16 23 N -0.92 -56.27 13.67 21.61 0.30 -55.98 16 24 Si 1.02 42.04 29.55 68.60 2.03 44.07 16 25 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 26 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 27 H -0.25 -9.35 7.11 99.48 0.71 -8.65 16 28 C -0.26 -11.50 9.08 22.51 0.20 -11.30 16 29 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.20 7.49 -2.39 -0.02 1.19 16 34 H 0.04 1.23 7.04 -2.39 -0.02 1.21 16 35 H 0.04 1.19 6.90 -2.38 -0.02 1.18 16 36 H 0.05 0.93 7.77 -2.39 -0.02 0.91 16 37 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 1.33 6.91 -2.39 -0.02 1.31 16 42 H 0.42 9.29 8.82 -92.71 -0.82 8.47 16 43 H 0.13 4.59 6.48 -2.91 -0.02 4.57 16 44 H 0.15 4.48 8.06 -2.91 -0.02 4.46 16 45 H 0.12 5.11 8.06 -2.91 -0.02 5.09 16 46 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 47 H 0.13 5.54 5.64 -2.91 -0.02 5.52 16 Total: -1.00 -74.53 374.07 5.00 -69.53 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: 0.15 Total: 35.67 kcal Atomic # 6 Polarization: -43.76 SS G_CDS: 4.26 Total: -39.51 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -1.18 Total: -76.42 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.26 Total: -33.35 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -74.53 5.00 -69.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294534004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.276 kcal (2) G-P(sol) polarization free energy of solvation -74.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds