Wall clock time and date at job start Tue Mar 31 2020 12:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47370 * 2 1 4 4 C 1.52996 * 109.47050 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.44023 * 52.45712 * 4 3 2 6 6 C 1.54276 * 110.59944 * 289.84439 * 4 3 2 7 7 C 1.53876 * 106.59719 * 217.65860 * 6 4 3 8 8 C 1.54467 * 106.68578 * 0.15706 * 7 6 4 9 9 C 1.54887 * 104.10226 * 23.34322 * 8 7 6 10 10 H 1.08995 * 110.75561 * 80.70565 * 9 8 7 11 11 C 1.50697 * 110.75546 * 203.89687 * 9 8 7 12 12 O 1.21287 * 120.00296 * 116.06635 * 11 9 8 13 13 N 1.34784 * 120.00013 * 296.06055 * 11 9 8 14 14 C 1.39922 * 119.99790 * 185.32595 * 13 11 9 15 15 C 1.38957 * 120.03974 * 33.41995 * 14 13 11 16 16 C 1.38163 * 120.06836 * 180.02562 * 15 14 13 17 17 C 1.38167 * 120.13427 * 0.02773 * 16 15 14 18 18 C 1.38905 * 120.07503 * 0.24738 * 17 16 15 19 19 O 1.35753 * 120.03494 * 179.70003 * 18 17 16 20 20 C 1.34835 * 116.99841 * 185.82824 * 19 18 17 21 21 H 1.07991 * 120.00425 * 5.39662 * 20 19 18 22 22 C 1.38654 * 119.99713 * 185.39844 * 20 19 18 23 23 N 1.31556 * 120.00054 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00007 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46980 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47355 * 119.99722 * 24 22 20 27 27 H 1.48507 * 109.47281 * 240.00102 * 24 22 20 28 28 C 1.38719 * 120.02942 * 213.44549 * 14 13 11 29 29 H 1.08992 * 109.47236 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46940 * 300.00038 * 1 2 3 31 31 H 1.09006 * 109.47061 * 59.99233 * 1 2 3 32 32 H 1.09004 * 109.46807 * 240.00433 * 2 1 3 33 33 H 1.08997 * 109.47194 * 120.00787 * 2 1 3 34 34 H 1.08998 * 109.46419 * 60.00312 * 3 2 1 35 35 H 1.08997 * 109.47091 * 300.00416 * 3 2 1 36 36 H 1.08995 * 110.02793 * 336.94003 * 6 4 3 37 37 H 1.08994 * 110.03551 * 98.37527 * 6 4 3 38 38 H 1.08999 * 110.03046 * 119.28390 * 7 6 4 39 39 H 1.08999 * 110.03064 * 240.66402 * 7 6 4 40 40 H 1.09005 * 110.40356 * 264.75773 * 8 7 6 41 41 H 1.08998 * 110.66403 * 142.05597 * 8 7 6 42 42 H 0.97001 * 119.99384 * 5.32198 * 13 11 9 43 43 H 1.07998 * 119.96785 * 0.05053 * 15 14 13 44 44 H 1.07991 * 119.93213 * 180.02562 * 16 15 14 45 45 H 1.07998 * 119.96304 * 179.97438 * 17 16 15 46 46 H 0.97001 * 120.00435 * 180.02562 * 23 22 20 47 47 H 1.08000 * 120.07262 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9503 0.8202 -0.8107 6 6 4.1134 0.9520 1.3574 7 6 5.3610 1.7991 1.6635 8 6 5.5321 2.7796 0.4823 9 6 4.1122 2.8879 -0.1270 10 1 3.4979 3.5822 0.4461 11 6 4.1819 3.3075 -1.5727 12 8 3.7923 2.5565 -2.4417 13 7 4.6772 4.5176 -1.9000 14 6 4.6398 4.9525 -3.2294 15 6 3.5848 4.5802 -4.0536 16 6 3.5475 5.0090 -5.3665 17 6 4.5586 5.8083 -5.8642 18 6 5.6188 6.1792 -5.0469 19 8 6.6149 6.9597 -5.5385 20 6 7.6720 7.1832 -4.7319 21 1 7.7404 6.6793 -3.7792 22 6 8.6712 8.0601 -5.1257 23 7 8.5876 8.6744 -6.2860 24 14 10.1361 8.3692 -4.0087 25 1 9.9928 7.5629 -2.7699 26 1 11.3852 7.9802 -4.7113 27 1 10.1946 9.8107 -3.6565 28 6 5.6561 5.7555 -3.7260 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9562 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 3.3631 1.0980 2.1344 37 1 4.3843 -0.1018 1.2927 38 1 5.2161 2.3561 2.5891 39 1 6.2371 1.1562 1.7482 40 1 6.2313 2.3747 -0.2494 41 1 5.8704 3.7532 0.8365 42 1 5.0596 5.0868 -1.2139 43 1 2.7930 3.9554 -3.6675 44 1 2.7263 4.7186 -6.0050 45 1 4.5268 6.1415 -6.8910 46 1 9.2868 9.2876 -6.5617 47 1 6.4771 6.0462 -3.0874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294534010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:04 Heat of formation + Delta-G solvation = -68.553981 kcal Electronic energy + Delta-G solvation = -26265.025405 eV Core-core repulsion = 22605.132961 eV Total energy + Delta-G solvation = -3659.892444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.55468 -39.00841 -37.89706 -36.28760 -34.75014 -34.13059 -32.24557 -30.17627 -29.92209 -29.05640 -28.13593 -25.43847 -25.26247 -22.93360 -21.83447 -21.73342 -20.99369 -19.87689 -19.66239 -18.01900 -17.79770 -16.91944 -15.74543 -15.61230 -15.30876 -15.08963 -14.90470 -14.59044 -14.17839 -14.11879 -13.96771 -13.55328 -13.43908 -13.07493 -12.98748 -12.76754 -12.55593 -12.38486 -11.95490 -11.72544 -11.57874 -11.56916 -11.42260 -11.13236 -11.09768 -11.00007 -10.91313 -10.72970 -10.60577 -10.57822 -10.54063 -10.43832 -9.86357 -9.52892 -9.37624 -8.81056 -7.72022 -7.15175 -6.45657 -4.05274 1.97663 2.37783 2.88033 3.11119 3.11345 3.17016 3.29012 3.95039 4.19033 4.33114 4.45561 4.60306 4.81759 4.86038 4.95915 5.05947 5.10874 5.14551 5.21453 5.24843 5.27817 5.33491 5.41098 5.47766 5.59965 5.67719 5.70027 5.71770 5.72104 5.86345 5.89369 5.94311 5.99489 6.02227 6.08613 6.10894 6.22044 6.25821 6.28719 6.32322 6.64196 6.98398 7.00289 7.13046 7.31239 7.42188 7.72490 7.82265 7.98833 8.35490 8.99900 9.70667 10.72539 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016924 B = 0.002972 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.018729 B = 9419.176205 C =10915.576774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.111 4.111 4 C -0.071 4.071 5 H 0.088 0.912 6 C -0.120 4.120 7 C -0.122 4.122 8 C -0.117 4.117 9 C -0.111 4.111 10 H 0.103 0.897 11 C 0.517 3.483 12 O -0.517 6.517 13 N -0.670 5.670 14 C 0.181 3.819 15 C -0.206 4.206 16 C -0.063 4.063 17 C -0.201 4.201 18 C 0.168 3.832 19 O -0.177 6.177 20 C -0.391 4.391 21 H 0.090 0.910 22 C 0.039 3.961 23 N -0.862 5.862 24 Si 0.940 3.060 25 H -0.268 1.268 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.257 4.257 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.405 0.595 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.269 0.731 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.902 -12.719 16.952 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.148 4.148 4 C -0.090 4.090 5 H 0.106 0.894 6 C -0.158 4.158 7 C -0.160 4.160 8 C -0.155 4.155 9 C -0.133 4.133 10 H 0.121 0.879 11 C 0.304 3.696 12 O -0.391 6.391 13 N -0.314 5.314 14 C 0.088 3.912 15 C -0.226 4.226 16 C -0.082 4.082 17 C -0.221 4.221 18 C 0.114 3.886 19 O -0.080 6.080 20 C -0.467 4.467 21 H 0.108 0.892 22 C -0.165 4.165 23 N -0.497 5.497 24 Si 0.765 3.235 25 H -0.192 1.192 26 H -0.201 1.201 27 H -0.202 1.202 28 C -0.278 4.278 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.240 0.760 43 H 0.136 0.864 44 H 0.133 0.867 45 H 0.136 0.864 46 H 0.079 0.921 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.025 -13.007 16.025 22.945 hybrid contribution 1.030 0.565 0.954 1.513 sum -8.996 -12.443 16.979 22.891 Atomic orbital electron populations 1.21776 0.96128 1.01354 1.01746 1.21506 0.95582 0.96966 1.01933 1.21631 0.94187 0.96969 1.02012 1.21862 0.95399 0.93860 0.97881 0.89370 1.22240 0.97068 0.99618 0.96834 1.22137 0.98288 0.97626 0.97937 1.22404 0.94986 1.00266 0.97831 1.22398 0.98987 0.99301 0.92599 0.87921 1.20590 0.77053 0.80796 0.91115 1.90709 1.46325 1.51637 1.50478 1.43567 1.60933 1.18305 1.08624 1.17431 0.94181 0.96265 0.83347 1.20524 0.99561 1.07715 0.94837 1.20528 0.97171 0.95884 0.94637 1.20243 0.95923 1.05807 1.00116 1.19087 0.88747 0.90036 0.90733 1.84020 1.25131 1.57982 1.40886 1.21311 0.96796 1.26718 1.01908 0.89240 1.25276 0.98766 0.95476 0.97002 1.70044 1.33767 1.26634 1.19275 0.85665 0.80071 0.78526 0.79241 1.19203 1.20138 1.20156 1.20822 1.00919 1.09132 0.96964 0.92991 0.92977 0.92684 0.91900 0.92219 0.92279 0.91429 0.91577 0.91665 0.91638 0.91574 0.90882 0.90779 0.75970 0.86407 0.86662 0.86409 0.92074 0.85303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.04 5.81 -26.73 -0.16 -1.20 16 3 C -0.11 -1.04 4.60 -26.73 -0.12 -1.16 16 4 C -0.07 -0.70 1.91 -88.96 -0.17 -0.87 16 5 H 0.09 1.07 7.48 -51.93 -0.39 0.68 16 6 C -0.12 -0.92 5.70 -25.61 -0.15 -1.07 16 7 C -0.12 -0.91 6.81 -25.51 -0.17 -1.08 16 8 C -0.12 -1.04 6.27 -24.97 -0.16 -1.20 16 9 C -0.11 -1.13 2.71 -89.78 -0.24 -1.38 16 10 H 0.10 0.88 8.06 -51.93 -0.42 0.46 16 11 C 0.52 7.48 6.87 -10.98 -0.08 7.40 16 12 O -0.52 -9.26 13.33 5.55 0.07 -9.19 16 13 N -0.67 -10.09 5.32 -9.88 -0.05 -10.14 16 14 C 0.18 3.48 6.27 -83.72 -0.53 2.95 16 15 C -0.21 -3.98 8.65 -39.34 -0.34 -4.32 16 16 C -0.06 -1.21 10.03 -39.63 -0.40 -1.61 16 17 C -0.20 -4.36 9.99 -39.36 -0.39 -4.76 16 18 C 0.17 4.10 6.64 -39.13 -0.26 3.84 16 19 O -0.18 -5.04 9.76 0.02 0.00 -5.04 16 20 C -0.39 -10.84 9.44 30.89 0.29 -10.55 16 21 H 0.09 2.30 5.30 -52.49 -0.28 2.02 16 22 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 23 N -0.86 -25.19 13.67 55.48 0.76 -24.43 16 24 Si 0.94 20.31 29.55 -169.99 -5.02 15.28 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 26 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 28 C -0.26 -5.59 9.04 -39.20 -0.35 -5.94 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.45 7.63 -51.93 -0.40 0.06 16 34 H 0.06 0.49 7.96 -51.93 -0.41 0.07 16 35 H 0.07 0.77 8.02 -51.93 -0.42 0.36 16 36 H 0.07 0.45 7.72 -51.93 -0.40 0.05 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.76 8.04 -51.93 -0.42 0.34 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.41 4.88 8.82 -40.82 -0.36 4.52 16 43 H 0.12 2.22 6.42 -52.49 -0.34 1.88 16 44 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 45 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 46 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.13 2.75 5.72 -52.49 -0.30 2.45 16 LS Contribution 379.83 15.07 5.72 5.72 Total: -1.00 -32.10 379.83 -8.96 -41.06 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -7.49 Total: 7.54 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -2.95 Total: -20.80 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.71 Total: -34.58 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.07 Total: -14.23 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.10 -8.96 -41.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294534010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.496 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds