Wall clock time and date at job start Tue Mar 31 2020 12:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47370 * 2 1 4 4 C 1.52996 * 109.47050 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.44023 * 52.45712 * 4 3 2 6 6 C 1.54276 * 110.59944 * 289.84439 * 4 3 2 7 7 C 1.53876 * 106.59719 * 217.65860 * 6 4 3 8 8 C 1.54467 * 106.68578 * 0.15706 * 7 6 4 9 9 C 1.54887 * 104.10226 * 23.34322 * 8 7 6 10 10 H 1.08995 * 110.75561 * 80.70565 * 9 8 7 11 11 C 1.50697 * 110.75546 * 203.89687 * 9 8 7 12 12 O 1.21287 * 120.00296 * 116.06635 * 11 9 8 13 13 N 1.34784 * 120.00013 * 296.06055 * 11 9 8 14 14 C 1.39922 * 119.99790 * 185.32595 * 13 11 9 15 15 C 1.38957 * 120.03974 * 33.41995 * 14 13 11 16 16 C 1.38163 * 120.06836 * 180.02562 * 15 14 13 17 17 C 1.38167 * 120.13427 * 0.02773 * 16 15 14 18 18 C 1.38905 * 120.07503 * 0.24738 * 17 16 15 19 19 O 1.35753 * 120.03494 * 179.70003 * 18 17 16 20 20 C 1.34835 * 116.99841 * 185.82824 * 19 18 17 21 21 H 1.07991 * 120.00425 * 5.39662 * 20 19 18 22 22 C 1.38654 * 119.99713 * 185.39844 * 20 19 18 23 23 N 1.31556 * 120.00054 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00007 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46980 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47355 * 119.99722 * 24 22 20 27 27 H 1.48507 * 109.47281 * 240.00102 * 24 22 20 28 28 C 1.38719 * 120.02942 * 213.44549 * 14 13 11 29 29 H 1.08992 * 109.47236 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46940 * 300.00038 * 1 2 3 31 31 H 1.09006 * 109.47061 * 59.99233 * 1 2 3 32 32 H 1.09004 * 109.46807 * 240.00433 * 2 1 3 33 33 H 1.08997 * 109.47194 * 120.00787 * 2 1 3 34 34 H 1.08998 * 109.46419 * 60.00312 * 3 2 1 35 35 H 1.08997 * 109.47091 * 300.00416 * 3 2 1 36 36 H 1.08995 * 110.02793 * 336.94003 * 6 4 3 37 37 H 1.08994 * 110.03551 * 98.37527 * 6 4 3 38 38 H 1.08999 * 110.03046 * 119.28390 * 7 6 4 39 39 H 1.08999 * 110.03064 * 240.66402 * 7 6 4 40 40 H 1.09005 * 110.40356 * 264.75773 * 8 7 6 41 41 H 1.08998 * 110.66403 * 142.05597 * 8 7 6 42 42 H 0.97001 * 119.99384 * 5.32198 * 13 11 9 43 43 H 1.07998 * 119.96785 * 0.05053 * 15 14 13 44 44 H 1.07991 * 119.93213 * 180.02562 * 16 15 14 45 45 H 1.07998 * 119.96304 * 179.97438 * 17 16 15 46 46 H 0.97001 * 120.00435 * 180.02562 * 23 22 20 47 47 H 1.08000 * 120.07262 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9503 0.8202 -0.8107 6 6 4.1134 0.9520 1.3574 7 6 5.3610 1.7991 1.6635 8 6 5.5321 2.7796 0.4823 9 6 4.1122 2.8879 -0.1270 10 1 3.4979 3.5822 0.4461 11 6 4.1819 3.3075 -1.5727 12 8 3.7923 2.5565 -2.4417 13 7 4.6772 4.5176 -1.9000 14 6 4.6398 4.9525 -3.2294 15 6 3.5848 4.5802 -4.0536 16 6 3.5475 5.0090 -5.3665 17 6 4.5586 5.8083 -5.8642 18 6 5.6188 6.1792 -5.0469 19 8 6.6149 6.9597 -5.5385 20 6 7.6720 7.1832 -4.7319 21 1 7.7404 6.6793 -3.7792 22 6 8.6712 8.0601 -5.1257 23 7 8.5876 8.6744 -6.2860 24 14 10.1361 8.3692 -4.0087 25 1 9.9928 7.5629 -2.7699 26 1 11.3852 7.9802 -4.7113 27 1 10.1946 9.8107 -3.6565 28 6 5.6561 5.7555 -3.7260 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9562 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 3.3631 1.0980 2.1344 37 1 4.3843 -0.1018 1.2927 38 1 5.2161 2.3561 2.5891 39 1 6.2371 1.1562 1.7482 40 1 6.2313 2.3747 -0.2494 41 1 5.8704 3.7532 0.8365 42 1 5.0596 5.0868 -1.2139 43 1 2.7930 3.9554 -3.6675 44 1 2.7263 4.7186 -6.0050 45 1 4.5268 6.1415 -6.8910 46 1 9.2868 9.2876 -6.5617 47 1 6.4771 6.0462 -3.0874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294534010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:03 Heat of formation + Delta-G solvation = -86.547036 kcal Electronic energy + Delta-G solvation = -26265.805642 eV Core-core repulsion = 22605.132961 eV Total energy + Delta-G solvation = -3660.672681 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.78497 -40.58178 -39.07351 -37.87772 -35.75422 -35.26268 -34.23845 -31.39640 -30.71389 -30.55493 -29.45310 -27.30708 -26.09284 -24.18389 -23.51773 -22.43895 -22.22944 -20.93273 -20.54850 -19.77524 -19.30664 -18.28957 -17.16636 -16.83999 -16.52136 -16.47230 -16.01651 -15.85200 -15.63598 -15.52456 -15.36491 -14.72461 -14.62127 -14.38139 -14.19489 -13.76160 -13.57402 -13.49054 -13.28038 -13.21474 -12.87770 -12.75048 -12.59909 -12.39174 -12.22525 -12.08815 -12.03628 -11.77324 -11.64293 -11.50349 -11.30631 -11.27583 -11.22855 -11.21409 -10.82854 -10.65542 -9.36967 -8.88564 -8.47271 -6.16152 0.38397 0.67552 1.35600 1.43614 1.53894 1.62464 2.05750 2.17601 2.82469 3.15590 3.40020 3.47702 3.58832 3.68345 4.02891 4.13362 4.18817 4.22242 4.31149 4.37925 4.43627 4.46933 4.53288 4.55270 4.60553 4.64663 4.73775 4.75927 4.79828 4.95249 5.00262 5.01008 5.05332 5.10151 5.10835 5.23033 5.25490 5.29461 5.34756 5.38947 5.46753 5.49027 5.51829 5.58419 5.65140 5.65789 6.00876 6.15769 6.47193 6.97043 7.13732 7.76460 8.75982 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016924 B = 0.002972 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.018729 B = 9419.176205 C =10915.576774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.107 4.107 4 C -0.072 4.072 5 H 0.058 0.942 6 C -0.114 4.114 7 C -0.118 4.118 8 C -0.117 4.117 9 C -0.103 4.103 10 H 0.129 0.871 11 C 0.516 3.484 12 O -0.553 6.553 13 N -0.663 5.663 14 C 0.187 3.813 15 C -0.201 4.201 16 C -0.052 4.052 17 C -0.215 4.215 18 C 0.134 3.866 19 O -0.226 6.226 20 C -0.412 4.412 21 H 0.102 0.898 22 C -0.022 4.022 23 N -0.919 5.919 24 Si 1.019 2.981 25 H -0.249 1.249 26 H -0.271 1.271 27 H -0.267 1.267 28 C -0.261 4.261 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.092 0.908 42 H 0.421 0.579 43 H 0.129 0.871 44 H 0.153 0.847 45 H 0.119 0.881 46 H 0.273 0.727 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.549 -13.850 20.620 26.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.144 4.144 4 C -0.091 4.091 5 H 0.077 0.923 6 C -0.152 4.152 7 C -0.156 4.156 8 C -0.155 4.155 9 C -0.124 4.124 10 H 0.147 0.853 11 C 0.306 3.694 12 O -0.430 6.430 13 N -0.309 5.309 14 C 0.093 3.907 15 C -0.221 4.221 16 C -0.071 4.071 17 C -0.235 4.235 18 C 0.083 3.917 19 O -0.132 6.132 20 C -0.488 4.488 21 H 0.119 0.881 22 C -0.220 4.220 23 N -0.557 5.557 24 Si 0.838 3.162 25 H -0.172 1.172 26 H -0.196 1.196 27 H -0.192 1.192 28 C -0.282 4.282 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.110 0.890 42 H 0.259 0.741 43 H 0.147 0.853 44 H 0.171 0.829 45 H 0.137 0.863 46 H 0.082 0.918 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.709 -14.168 19.742 26.555 hybrid contribution 0.983 0.722 -0.174 1.232 sum -9.726 -13.446 19.568 25.657 Atomic orbital electron populations 1.21773 0.95542 1.01877 1.01742 1.21492 0.96098 0.96450 1.01823 1.21600 0.93856 0.97379 1.01601 1.21838 0.95685 0.93175 0.98370 0.92330 1.22214 0.97569 0.99771 0.95618 1.22138 0.98217 0.97347 0.97858 1.22446 0.93428 1.01688 0.97936 1.22479 1.00569 0.99935 0.89453 0.85312 1.21447 0.75454 0.79748 0.92761 1.90694 1.47746 1.52549 1.52042 1.43601 1.61034 1.18958 1.07281 1.17492 0.93065 0.94882 0.85287 1.20833 0.99514 1.06807 0.94989 1.20913 0.97057 0.94056 0.95026 1.20470 0.96165 1.06617 1.00260 1.19609 0.89077 0.90576 0.92422 1.83986 1.26542 1.60279 1.42431 1.21821 0.97333 1.27270 1.02389 0.88100 1.26597 1.01908 0.94812 0.98677 1.70190 1.35471 1.28279 1.21808 0.84530 0.75360 0.78857 0.77463 1.17194 1.19612 1.19242 1.20849 1.01630 1.09601 0.96146 0.92260 0.91888 0.93758 0.93585 0.90748 0.90390 0.93977 0.89884 0.91450 0.89727 0.91286 0.92885 0.88974 0.74067 0.85339 0.82945 0.86291 0.91808 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 71.98 0.71 -1.42 16 2 C -0.12 -1.88 5.81 30.60 0.18 -1.71 16 3 C -0.11 -1.81 4.60 30.59 0.14 -1.67 16 4 C -0.07 -1.28 1.91 -9.72 -0.02 -1.30 16 5 H 0.06 1.40 7.48 -2.39 -0.02 1.38 16 6 C -0.11 -1.39 5.70 31.32 0.18 -1.21 16 7 C -0.12 -1.34 6.81 31.39 0.21 -1.12 16 8 C -0.12 -1.76 6.27 31.74 0.20 -1.56 16 9 C -0.10 -1.84 2.71 -10.25 -0.03 -1.87 16 10 H 0.13 1.70 8.06 -2.39 -0.02 1.68 16 11 C 0.52 14.18 6.87 87.65 0.60 14.78 16 12 O -0.55 -19.52 13.33 -3.05 -0.04 -19.57 16 13 N -0.66 -18.92 5.32 -303.55 -1.61 -20.54 16 14 C 0.19 7.06 6.27 38.14 0.24 7.30 16 15 C -0.20 -7.51 8.65 22.42 0.19 -7.32 16 16 C -0.05 -1.93 10.03 22.23 0.22 -1.71 16 17 C -0.22 -9.51 9.99 22.41 0.22 -9.29 16 18 C 0.13 6.79 6.64 22.56 0.15 6.94 16 19 O -0.23 -13.58 9.76 -22.83 -0.22 -13.80 16 20 C -0.41 -23.69 9.44 67.92 0.64 -23.05 16 21 H 0.10 5.30 5.30 -2.92 -0.02 5.28 16 22 C -0.02 -1.25 5.49 84.83 0.47 -0.79 16 23 N -0.92 -56.05 13.67 21.61 0.30 -55.75 16 24 Si 1.02 42.02 29.55 68.60 2.03 44.04 16 25 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 26 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 27 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 28 C -0.26 -11.47 9.04 22.51 0.20 -11.27 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 31 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.07 0.94 7.63 -2.39 -0.02 0.92 16 34 H 0.08 1.03 7.96 -2.39 -0.02 1.01 16 35 H 0.04 0.92 8.02 -2.39 -0.02 0.91 16 36 H 0.08 0.77 7.72 -2.39 -0.02 0.76 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.05 1.02 8.04 -2.38 -0.02 1.00 16 41 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.42 9.24 8.82 -92.71 -0.82 8.42 16 43 H 0.13 4.62 6.42 -2.91 -0.02 4.60 16 44 H 0.15 4.47 8.06 -2.92 -0.02 4.44 16 45 H 0.12 5.11 8.06 -2.91 -0.02 5.08 16 46 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 47 H 0.13 5.56 5.72 -2.91 -0.02 5.54 16 Total: -1.00 -73.91 379.83 5.11 -68.80 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: 0.15 Total: 33.07 kcal Atomic # 6 Polarization: -40.78 SS G_CDS: 4.52 Total: -36.26 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -1.32 Total: -76.29 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -0.26 Total: -33.37 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -73.91 5.11 -68.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294534010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.751 kcal (2) G-P(sol) polarization free energy of solvation -73.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds