Wall clock time and date at job start Tue Mar 31 2020 12:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46897 * 2 1 4 4 C 1.53002 * 109.47015 * 180.02562 * 3 2 1 5 5 H 1.08996 * 110.05207 * 306.97572 * 4 3 2 6 6 C 1.54266 * 110.03411 * 68.39587 * 4 3 2 7 7 C 1.54887 * 104.19353 * 142.89560 * 6 4 3 8 8 C 1.54966 * 102.78049 * 322.08300 * 7 6 4 9 9 C 1.53884 * 110.03205 * 185.56651 * 4 3 2 10 10 H 1.08991 * 110.03039 * 121.38115 * 9 4 3 11 11 C 1.50700 * 110.03117 * 359.97438 * 9 4 3 12 12 O 1.21286 * 120.00432 * 274.40272 * 11 9 4 13 13 N 1.34781 * 119.99732 * 94.40199 * 11 9 4 14 14 C 1.39923 * 119.99907 * 174.88696 * 13 11 9 15 15 C 1.38959 * 120.03578 * 326.68679 * 14 13 11 16 16 C 1.38160 * 120.06553 * 179.97438 * 15 14 13 17 17 C 1.38171 * 120.13698 * 0.03971 * 16 15 14 18 18 C 1.38911 * 120.07262 * 359.97438 * 17 16 15 19 19 O 1.35753 * 120.03297 * 180.02562 * 18 17 16 20 20 C 1.34825 * 116.99679 * 185.52467 * 19 18 17 21 21 H 1.08000 * 120.00761 * 354.85572 * 20 19 18 22 22 C 1.38657 * 119.99796 * 174.58007 * 20 19 18 23 23 N 1.31565 * 119.99885 * 180.27351 * 22 20 19 24 24 Si 1.86798 * 119.99894 * 0.27561 * 22 20 19 25 25 H 1.48503 * 109.46837 * 90.00189 * 24 22 20 26 26 H 1.48502 * 109.46962 * 209.99847 * 24 22 20 27 27 H 1.48493 * 109.47136 * 330.00042 * 24 22 20 28 28 C 1.38715 * 120.02899 * 146.95876 * 14 13 11 29 29 H 1.08999 * 109.46683 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47121 * 299.99912 * 1 2 3 31 31 H 1.08994 * 109.47278 * 60.00007 * 1 2 3 32 32 H 1.08999 * 109.46802 * 240.00474 * 2 1 3 33 33 H 1.08994 * 109.47278 * 119.99992 * 2 1 3 34 34 H 1.08995 * 109.47163 * 60.00114 * 3 2 1 35 35 H 1.09006 * 109.47522 * 299.99865 * 3 2 1 36 36 H 1.09001 * 110.48571 * 261.57201 * 6 4 3 37 37 H 1.08991 * 110.48666 * 24.08766 * 6 4 3 38 38 H 1.09003 * 110.75907 * 80.37229 * 7 6 4 39 39 H 1.08998 * 110.75713 * 203.55717 * 7 6 4 40 40 H 1.08993 * 110.47533 * 279.23367 * 8 7 6 41 41 H 1.09002 * 110.52904 * 156.57196 * 8 7 6 42 42 H 0.96998 * 120.00006 * 354.89450 * 13 11 9 43 43 H 1.07999 * 119.97056 * 359.97438 * 15 14 13 44 44 H 1.07990 * 119.93434 * 180.02562 * 16 15 14 45 45 H 1.07999 * 119.96343 * 179.97438 * 17 16 15 46 46 H 0.96995 * 119.99654 * 180.02562 * 23 22 20 47 47 H 1.07994 * 120.07735 * 0.04648 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9441 0.8265 0.8171 6 6 4.0979 0.9091 -1.3484 7 6 5.3530 1.7711 -1.6327 8 6 4.9277 3.1729 -1.1273 9 6 4.0972 2.8814 0.1396 10 1 4.7264 2.9638 1.0257 11 6 2.9438 3.8468 0.2337 12 8 2.4277 4.2755 -0.7767 13 7 2.4858 4.2339 1.4407 14 6 1.4875 5.2103 1.5300 15 6 1.4345 6.2382 0.5965 16 6 0.4488 7.2024 0.6837 17 6 -0.4865 7.1483 1.6993 18 6 -0.4387 6.1234 2.6358 19 8 -1.3583 6.0707 3.6329 20 6 -1.1882 5.1192 4.5728 21 1 -0.3982 4.3904 4.4668 22 6 -2.0240 5.0796 5.6785 23 7 -1.8546 4.1543 6.5984 24 14 -3.3904 6.3400 5.8620 25 1 -4.6268 5.8266 5.2195 26 1 -3.6471 6.5853 7.3040 27 1 -2.9835 7.6098 5.2086 28 6 0.5532 5.1562 2.5539 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 4.3693 -0.1431 -1.2624 37 1 3.3526 1.0471 -2.1316 38 1 6.2106 1.4021 -1.0700 39 1 5.5734 1.7924 -2.6999 40 1 4.3176 3.6790 -1.8754 41 1 5.8040 3.7720 -0.8796 42 1 2.8482 3.8356 2.2475 43 1 2.1646 6.2836 -0.1981 44 1 0.4094 8.0000 -0.0431 45 1 -1.2555 7.9036 1.7651 46 1 -2.4394 4.1265 7.3716 47 1 0.5953 4.3613 3.2836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294534015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:09 Heat of formation + Delta-G solvation = -61.911206 kcal Electronic energy + Delta-G solvation = -26916.808450 eV Core-core repulsion = 23257.204058 eV Total energy + Delta-G solvation = -3659.604391 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.80379 -39.15691 -37.84498 -36.38437 -34.54446 -34.20431 -32.36418 -30.35840 -29.63194 -29.25302 -28.31253 -25.29617 -25.16845 -22.96323 -21.81949 -21.73865 -20.72467 -20.61261 -19.22579 -17.86530 -17.73521 -16.85685 -16.14997 -15.59203 -15.28225 -15.12351 -15.07858 -14.60835 -14.29784 -13.83407 -13.76366 -13.65232 -13.59832 -13.13344 -12.95813 -12.57398 -12.32007 -12.17840 -12.05334 -11.87428 -11.68398 -11.41808 -11.25601 -11.19779 -10.98439 -10.95543 -10.85514 -10.78888 -10.73859 -10.52921 -10.47090 -10.27618 -9.85953 -9.51764 -9.40669 -8.85753 -7.79508 -7.29150 -6.43449 -4.10734 1.89664 2.27084 2.84611 3.22185 3.23652 3.27893 3.39856 4.22743 4.26545 4.36666 4.46692 4.53558 4.83845 4.86526 4.98823 5.04679 5.09454 5.13676 5.22430 5.29657 5.35982 5.41285 5.44589 5.58163 5.62189 5.69378 5.80269 5.80704 5.82716 5.91199 5.95234 5.97464 6.00816 6.03975 6.16278 6.17893 6.19844 6.23161 6.30007 6.37910 6.48265 6.89587 6.93341 7.18590 7.19919 7.56104 7.72506 7.77019 8.01361 8.33428 8.92161 9.54652 10.64209 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.003500 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.179255 B = 7997.072572 C = 9081.776706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.129 4.129 4 C -0.077 4.077 5 H 0.080 0.920 6 C -0.117 4.117 7 C -0.123 4.123 8 C -0.112 4.112 9 C -0.111 4.111 10 H 0.091 0.909 11 C 0.525 3.475 12 O -0.520 6.520 13 N -0.672 5.672 14 C 0.182 3.818 15 C -0.199 4.199 16 C -0.064 4.064 17 C -0.202 4.202 18 C 0.175 3.825 19 O -0.216 6.216 20 C -0.390 4.390 21 H 0.105 0.895 22 C 0.064 3.936 23 N -0.881 5.881 24 Si 0.905 3.095 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.259 1.259 28 C -0.245 4.245 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.407 0.593 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.279 0.721 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.037 -5.830 -12.885 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.166 4.166 4 C -0.095 4.095 5 H 0.098 0.902 6 C -0.154 4.154 7 C -0.160 4.160 8 C -0.150 4.150 9 C -0.133 4.133 10 H 0.109 0.891 11 C 0.313 3.687 12 O -0.395 6.395 13 N -0.316 5.316 14 C 0.089 3.911 15 C -0.220 4.220 16 C -0.083 4.083 17 C -0.222 4.222 18 C 0.122 3.878 19 O -0.121 6.121 20 C -0.465 4.465 21 H 0.122 0.878 22 C -0.139 4.139 23 N -0.519 5.519 24 Si 0.730 3.270 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.183 1.183 28 C -0.267 4.267 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.242 0.758 43 H 0.138 0.862 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.089 0.911 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 12.428 -5.506 -13.355 19.056 hybrid contribution -0.405 0.075 0.876 0.968 sum 12.023 -5.431 -12.479 18.160 Atomic orbital electron populations 1.21780 0.95748 1.01353 1.02358 1.21484 0.96067 0.96448 1.01585 1.21975 0.93836 0.97476 1.03335 1.21731 0.95943 0.93152 0.98719 0.90156 1.22443 0.97312 0.98984 0.96691 1.22487 0.97632 0.94965 1.00964 1.22378 0.98911 0.97624 0.96104 1.22072 0.95245 0.94792 1.01142 0.89102 1.20500 0.84230 0.80991 0.83028 1.90689 1.58054 1.55605 1.35125 1.43668 1.38756 1.40073 1.09096 1.17434 0.89022 0.88430 0.96223 1.20599 1.03080 0.96032 1.02248 1.20527 0.93842 0.97507 0.96457 1.20241 1.03571 1.00348 0.98010 1.18801 0.87709 0.92535 0.88743 1.83600 1.43761 1.52466 1.32299 1.20724 1.18878 1.07525 0.99396 0.87800 1.24456 0.98224 0.97374 0.93863 1.69645 1.38810 1.33055 1.10351 0.86186 0.81356 0.82161 0.77266 1.19883 1.20843 1.18278 1.20923 0.98315 1.04084 1.03366 0.92949 0.92330 0.92813 0.92185 0.92206 0.91461 0.90805 0.91549 0.91115 0.91534 0.91349 0.89526 0.91425 0.75783 0.86176 0.86509 0.86444 0.91080 0.84706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.91 37.16 0.37 -1.45 16 2 C -0.12 -1.26 5.79 -26.73 -0.15 -1.41 16 3 C -0.13 -1.55 3.40 -26.73 -0.09 -1.64 16 4 C -0.08 -0.74 2.92 -89.50 -0.26 -1.01 16 5 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 6 C -0.12 -1.01 5.56 -25.07 -0.14 -1.15 16 7 C -0.12 -0.97 6.91 -24.70 -0.17 -1.14 16 8 C -0.11 -1.09 6.32 -25.03 -0.16 -1.25 16 9 C -0.11 -1.15 3.29 -90.65 -0.30 -1.45 16 10 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 11 C 0.52 7.47 4.41 -10.98 -0.05 7.42 16 12 O -0.52 -9.06 12.69 5.55 0.07 -8.99 16 13 N -0.67 -10.02 4.82 -9.88 -0.05 -10.07 16 14 C 0.18 3.41 6.28 -83.72 -0.53 2.88 16 15 C -0.20 -3.69 8.65 -39.34 -0.34 -4.03 16 16 C -0.06 -1.16 10.03 -39.63 -0.40 -1.56 16 17 C -0.20 -4.08 9.99 -39.36 -0.39 -4.47 16 18 C 0.17 4.04 6.65 -39.13 -0.26 3.78 16 19 O -0.22 -5.67 8.58 0.05 0.00 -5.67 16 20 C -0.39 -10.83 9.94 30.89 0.31 -10.52 16 21 H 0.10 2.93 5.43 -52.49 -0.29 2.64 16 22 C 0.06 1.77 5.49 -17.51 -0.10 1.68 16 23 N -0.88 -25.09 13.96 55.48 0.77 -24.31 16 24 Si 0.90 21.55 28.62 -169.99 -4.86 16.68 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 28 C -0.25 -5.23 9.08 -39.21 -0.36 -5.59 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.57 7.53 -51.93 -0.39 0.18 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.93 6.81 -51.93 -0.35 0.58 16 35 H 0.07 1.05 7.10 -51.93 -0.37 0.68 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.68 7.75 -51.93 -0.40 0.28 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 1.02 6.90 -51.93 -0.36 0.66 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.41 5.03 8.82 -40.82 -0.36 4.67 16 43 H 0.12 2.18 6.41 -52.49 -0.34 1.84 16 44 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 45 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 46 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.14 2.96 5.63 -52.49 -0.30 2.67 16 LS Contribution 372.85 15.07 5.62 5.62 Total: -1.00 -30.61 372.85 -8.82 -39.44 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -7.36 Total: 8.21 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -3.02 Total: -20.91 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.73 Total: -34.38 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.07 Total: -14.66 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.86 Total: 16.68 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.61 -8.82 -39.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294534015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.474 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds