Wall clock time and date at job start Tue Mar 31 2020 12:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46897 * 2 1 4 4 C 1.53002 * 109.47015 * 180.02562 * 3 2 1 5 5 H 1.08996 * 110.05207 * 306.97572 * 4 3 2 6 6 C 1.54266 * 110.03411 * 68.39587 * 4 3 2 7 7 C 1.54887 * 104.19353 * 142.89560 * 6 4 3 8 8 C 1.54966 * 102.78049 * 322.08300 * 7 6 4 9 9 C 1.53884 * 110.03205 * 185.56651 * 4 3 2 10 10 H 1.08991 * 110.03039 * 121.38115 * 9 4 3 11 11 C 1.50700 * 110.03117 * 359.97438 * 9 4 3 12 12 O 1.21286 * 120.00432 * 274.40272 * 11 9 4 13 13 N 1.34781 * 119.99732 * 94.40199 * 11 9 4 14 14 C 1.39923 * 119.99907 * 174.88696 * 13 11 9 15 15 C 1.38959 * 120.03578 * 326.68679 * 14 13 11 16 16 C 1.38160 * 120.06553 * 179.97438 * 15 14 13 17 17 C 1.38171 * 120.13698 * 0.03971 * 16 15 14 18 18 C 1.38911 * 120.07262 * 359.97438 * 17 16 15 19 19 O 1.35753 * 120.03297 * 180.02562 * 18 17 16 20 20 C 1.34825 * 116.99679 * 185.52467 * 19 18 17 21 21 H 1.08000 * 120.00761 * 354.85572 * 20 19 18 22 22 C 1.38657 * 119.99796 * 174.58007 * 20 19 18 23 23 N 1.31565 * 119.99885 * 180.27351 * 22 20 19 24 24 Si 1.86798 * 119.99894 * 0.27561 * 22 20 19 25 25 H 1.48503 * 109.46837 * 90.00189 * 24 22 20 26 26 H 1.48502 * 109.46962 * 209.99847 * 24 22 20 27 27 H 1.48493 * 109.47136 * 330.00042 * 24 22 20 28 28 C 1.38715 * 120.02899 * 146.95876 * 14 13 11 29 29 H 1.08999 * 109.46683 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47121 * 299.99912 * 1 2 3 31 31 H 1.08994 * 109.47278 * 60.00007 * 1 2 3 32 32 H 1.08999 * 109.46802 * 240.00474 * 2 1 3 33 33 H 1.08994 * 109.47278 * 119.99992 * 2 1 3 34 34 H 1.08995 * 109.47163 * 60.00114 * 3 2 1 35 35 H 1.09006 * 109.47522 * 299.99865 * 3 2 1 36 36 H 1.09001 * 110.48571 * 261.57201 * 6 4 3 37 37 H 1.08991 * 110.48666 * 24.08766 * 6 4 3 38 38 H 1.09003 * 110.75907 * 80.37229 * 7 6 4 39 39 H 1.08998 * 110.75713 * 203.55717 * 7 6 4 40 40 H 1.08993 * 110.47533 * 279.23367 * 8 7 6 41 41 H 1.09002 * 110.52904 * 156.57196 * 8 7 6 42 42 H 0.96998 * 120.00006 * 354.89450 * 13 11 9 43 43 H 1.07999 * 119.97056 * 359.97438 * 15 14 13 44 44 H 1.07990 * 119.93434 * 180.02562 * 16 15 14 45 45 H 1.07999 * 119.96343 * 179.97438 * 17 16 15 46 46 H 0.96995 * 119.99654 * 180.02562 * 23 22 20 47 47 H 1.07994 * 120.07735 * 0.04648 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9441 0.8265 0.8171 6 6 4.0979 0.9091 -1.3484 7 6 5.3530 1.7711 -1.6327 8 6 4.9277 3.1729 -1.1273 9 6 4.0972 2.8814 0.1396 10 1 4.7264 2.9638 1.0257 11 6 2.9438 3.8468 0.2337 12 8 2.4277 4.2755 -0.7767 13 7 2.4858 4.2339 1.4407 14 6 1.4875 5.2103 1.5300 15 6 1.4345 6.2382 0.5965 16 6 0.4488 7.2024 0.6837 17 6 -0.4865 7.1483 1.6993 18 6 -0.4387 6.1234 2.6358 19 8 -1.3583 6.0707 3.6329 20 6 -1.1882 5.1192 4.5728 21 1 -0.3982 4.3904 4.4668 22 6 -2.0240 5.0796 5.6785 23 7 -1.8546 4.1543 6.5984 24 14 -3.3904 6.3400 5.8620 25 1 -4.6268 5.8266 5.2195 26 1 -3.6471 6.5853 7.3040 27 1 -2.9835 7.6098 5.2086 28 6 0.5532 5.1562 2.5539 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 4.3693 -0.1431 -1.2624 37 1 3.3526 1.0471 -2.1316 38 1 6.2106 1.4021 -1.0700 39 1 5.5734 1.7924 -2.6999 40 1 4.3176 3.6790 -1.8754 41 1 5.8040 3.7720 -0.8796 42 1 2.8482 3.8356 2.2475 43 1 2.1646 6.2836 -0.1981 44 1 0.4094 8.0000 -0.0431 45 1 -1.2555 7.9036 1.7651 46 1 -2.4394 4.1265 7.3716 47 1 0.5953 4.3613 3.2836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294534015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:08 Heat of formation + Delta-G solvation = -78.441168 kcal Electronic energy + Delta-G solvation = -26917.525243 eV Core-core repulsion = 23257.204058 eV Total energy + Delta-G solvation = -3660.321184 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.99050 -40.75179 -39.08290 -37.87476 -35.70580 -35.33626 -34.41073 -31.50344 -30.88792 -30.50455 -29.57650 -27.21281 -26.12369 -24.24705 -23.43784 -22.64219 -22.07137 -21.40149 -20.48544 -19.65021 -19.35332 -17.98265 -17.34402 -16.95318 -16.80600 -16.37608 -16.13139 -15.82981 -15.76691 -15.69100 -15.26896 -14.80085 -14.57707 -14.54630 -14.23128 -14.08312 -13.87880 -13.54183 -13.27527 -12.97153 -12.84961 -12.74825 -12.65214 -12.44500 -12.28055 -12.08763 -11.95766 -11.79636 -11.69950 -11.55526 -11.45464 -11.42207 -11.38490 -11.18505 -10.88124 -10.67032 -9.41406 -8.93676 -8.50606 -6.23493 0.36207 0.62508 1.32089 1.35828 1.51917 1.61746 2.05137 2.28048 2.76323 3.02867 3.14071 3.41026 3.59580 3.64828 3.90252 4.06756 4.10256 4.25267 4.28201 4.32310 4.40125 4.42257 4.50279 4.58322 4.58950 4.60995 4.67410 4.71302 4.74680 4.88643 4.89208 4.95374 4.98768 5.07252 5.14831 5.23055 5.24449 5.28482 5.33201 5.36388 5.39314 5.42485 5.49301 5.54574 5.61077 5.74080 5.88581 6.19428 6.45379 6.83786 7.12420 7.56644 8.60560 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.003500 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.179255 B = 7997.072572 C = 9081.776706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C -0.125 4.125 4 C -0.073 4.073 5 H 0.103 0.897 6 C -0.115 4.115 7 C -0.115 4.115 8 C -0.113 4.113 9 C -0.107 4.107 10 H 0.118 0.882 11 C 0.525 3.475 12 O -0.553 6.553 13 N -0.668 5.668 14 C 0.186 3.814 15 C -0.194 4.194 16 C -0.053 4.053 17 C -0.205 4.205 18 C 0.141 3.859 19 O -0.240 6.240 20 C -0.400 4.400 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.920 5.920 24 Si 0.967 3.033 25 H -0.268 1.268 26 H -0.267 1.267 27 H -0.261 1.261 28 C -0.257 4.257 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.041 0.959 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.419 0.581 43 H 0.130 0.870 44 H 0.159 0.841 45 H 0.133 0.867 46 H 0.285 0.715 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.902 -5.844 -14.352 21.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.151 4.151 3 C -0.163 4.163 4 C -0.092 4.092 5 H 0.121 0.879 6 C -0.153 4.153 7 C -0.153 4.153 8 C -0.151 4.151 9 C -0.128 4.128 10 H 0.137 0.863 11 C 0.315 3.685 12 O -0.430 6.430 13 N -0.313 5.313 14 C 0.091 3.909 15 C -0.215 4.215 16 C -0.071 4.071 17 C -0.224 4.224 18 C 0.091 3.909 19 O -0.147 6.147 20 C -0.476 4.476 21 H 0.100 0.900 22 C -0.185 4.185 23 N -0.561 5.561 24 Si 0.789 3.211 25 H -0.193 1.193 26 H -0.192 1.192 27 H -0.186 1.186 28 C -0.279 4.279 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.256 0.744 43 H 0.148 0.852 44 H 0.176 0.824 45 H 0.151 0.849 46 H 0.094 0.906 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.337 -5.535 -14.843 21.365 hybrid contribution -0.823 0.076 1.088 1.367 sum 13.514 -5.459 -13.754 20.040 Atomic orbital electron populations 1.21804 0.96995 1.01923 1.00744 1.21473 0.94948 0.95702 1.02976 1.21892 0.95892 0.97842 1.00630 1.21792 0.93903 0.93067 1.00460 0.87906 1.22441 0.97270 1.00322 0.95253 1.22481 0.97769 0.93279 1.01726 1.22392 0.98805 0.98981 0.94922 1.22212 0.93845 0.93824 1.02926 0.86342 1.21283 0.84540 0.80748 0.81907 1.90667 1.59280 1.56925 1.36125 1.43750 1.37833 1.39416 1.10319 1.17516 0.89036 0.89217 0.95127 1.20910 1.03158 0.95619 1.01808 1.20978 0.92167 0.97923 0.96035 1.20533 1.04470 0.99807 0.97631 1.19348 0.88260 0.94221 0.89034 1.83546 1.45476 1.52545 1.33151 1.20694 1.18704 1.07833 1.00358 0.89980 1.25231 1.00481 0.99293 0.93508 1.69720 1.40324 1.34816 1.11205 0.85266 0.78450 0.79452 0.77897 1.19288 1.19210 1.18556 1.20890 0.99165 1.03683 1.04118 0.91285 0.94694 0.93667 0.90385 0.90998 0.93997 0.93631 0.89516 0.92682 0.89463 0.90673 0.92125 0.89903 0.74384 0.85174 0.82383 0.84877 0.90576 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 9.91 71.98 0.71 -3.03 16 2 C -0.11 -2.31 5.79 30.59 0.18 -2.13 16 3 C -0.12 -2.98 3.40 30.59 0.10 -2.88 16 4 C -0.07 -1.27 2.92 -10.07 -0.03 -1.30 16 5 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 6 C -0.12 -1.67 5.56 31.67 0.18 -1.50 16 7 C -0.12 -1.44 6.91 31.91 0.22 -1.22 16 8 C -0.11 -1.93 6.32 31.70 0.20 -1.73 16 9 C -0.11 -1.99 3.29 -10.81 -0.04 -2.03 16 10 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 11 C 0.53 14.60 4.41 87.66 0.39 14.99 16 12 O -0.55 -19.21 12.69 -3.05 -0.04 -19.25 16 13 N -0.67 -19.85 4.82 -303.55 -1.46 -21.32 16 14 C 0.19 6.99 6.28 38.14 0.24 7.22 16 15 C -0.19 -6.97 8.65 22.42 0.19 -6.77 16 16 C -0.05 -1.78 10.03 22.24 0.22 -1.56 16 17 C -0.20 -8.11 9.99 22.42 0.22 -7.89 16 18 C 0.14 6.71 6.65 22.56 0.15 6.86 16 19 O -0.24 -13.02 8.58 -22.73 -0.20 -13.22 16 20 C -0.40 -23.31 9.94 67.92 0.68 -22.63 16 21 H 0.08 4.97 5.43 -2.91 -0.02 4.96 16 22 C 0.01 0.78 5.49 84.83 0.47 1.25 16 23 N -0.92 -54.18 13.96 21.62 0.30 -53.88 16 24 Si 0.97 45.16 28.62 68.60 1.96 47.13 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.26 -12.17 7.11 99.48 0.71 -11.47 16 28 C -0.26 -11.42 9.08 22.51 0.20 -11.21 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.32 7.53 -2.39 -0.02 1.30 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.04 1.19 6.81 -2.39 -0.02 1.18 16 35 H 0.04 1.33 7.10 -2.38 -0.02 1.32 16 36 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.05 0.98 7.75 -2.39 -0.02 0.96 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 1.37 6.90 -2.39 -0.02 1.36 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.42 10.29 8.82 -92.71 -0.82 9.47 16 43 H 0.13 4.49 6.41 -2.91 -0.02 4.47 16 44 H 0.16 4.06 8.06 -2.92 -0.02 4.03 16 45 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 46 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 47 H 0.12 5.58 5.63 -2.91 -0.02 5.56 16 Total: -1.00 -69.62 372.85 5.01 -64.60 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 0.15 Total: 31.48 kcal Atomic # 6 Polarization: -39.84 SS G_CDS: 4.29 Total: -35.55 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -1.16 Total: -75.20 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.23 Total: -32.47 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.96 Total: 47.13 kcal Total: -69.62 5.01 -64.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294534015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.836 kcal (2) G-P(sol) polarization free energy of solvation -69.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds