Wall clock time and date at job start Tue Mar 31 2020 12:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47251 * 2 1 4 4 C 1.53001 * 109.47251 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47298 * 180.02562 * 4 3 2 6 6 C 1.46503 * 120.00230 * 270.00413 * 5 4 3 7 7 C 1.53001 * 109.46943 * 269.99885 * 6 5 4 8 8 C 1.34773 * 120.00415 * 89.99682 * 5 4 3 9 9 O 1.21729 * 119.99956 * 0.02562 * 8 5 4 10 10 C 1.46254 * 120.00587 * 179.97438 * 8 5 4 11 11 C 1.35023 * 120.00310 * 180.02562 * 10 8 5 12 12 C 1.46957 * 119.99860 * 180.02562 * 11 10 8 13 13 C 1.40027 * 120.10330 * 359.71768 * 12 11 10 14 14 C 1.37603 * 119.89527 * 179.79401 * 13 12 11 15 15 C 1.39167 * 120.10116 * 0.48869 * 14 13 12 16 16 O 1.35577 * 119.89656 * 179.76742 * 15 14 13 17 17 C 1.34777 * 116.99965 * 174.42496 * 16 15 14 18 18 H 1.08007 * 120.00251 * 5.04759 * 17 16 15 19 19 C 1.38716 * 120.00175 * 185.05653 * 17 16 15 20 20 N 1.31509 * 120.00309 * 179.97438 * 19 17 16 21 21 Si 1.86810 * 119.99753 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46607 * 90.00378 * 21 19 17 23 23 H 1.48499 * 109.47119 * 210.00148 * 21 19 17 24 24 H 1.48494 * 109.47014 * 330.00264 * 21 19 17 25 25 C 1.39178 * 120.20663 * 359.74407 * 15 14 13 26 26 C 1.37591 * 120.10059 * 0.02562 * 25 15 14 27 27 H 1.09002 * 109.47204 * 59.99806 * 1 2 3 28 28 H 1.09002 * 109.47194 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46732 * 299.99717 * 1 2 3 30 30 H 1.09003 * 109.47171 * 240.00125 * 2 1 3 31 31 H 1.08997 * 109.47209 * 120.00667 * 2 1 3 32 32 H 1.08999 * 109.47022 * 60.00461 * 3 2 1 33 33 H 1.08997 * 109.47559 * 300.00453 * 3 2 1 34 34 H 1.08999 * 109.46732 * 60.00283 * 4 3 2 35 35 H 1.09002 * 109.47204 * 300.00194 * 4 3 2 36 36 H 1.09001 * 109.47076 * 29.99229 * 6 5 4 37 37 H 1.08991 * 109.47650 * 149.99631 * 6 5 4 38 38 H 1.09001 * 109.47233 * 179.97438 * 7 6 5 39 39 H 1.08997 * 109.47391 * 299.99755 * 7 6 5 40 40 H 1.09004 * 109.46857 * 59.99646 * 7 6 5 41 41 H 1.07997 * 119.99741 * 0.28440 * 10 8 5 42 42 H 1.07997 * 119.99788 * 359.97438 * 11 10 8 43 43 H 1.07994 * 120.04849 * 0.02562 * 13 12 11 44 44 H 1.08003 * 119.94377 * 180.23113 * 14 13 12 45 45 H 0.96999 * 119.99916 * 179.97438 * 20 19 17 46 46 H 1.07997 * 119.94866 * 180.02562 * 25 15 14 47 47 H 1.07998 * 120.05327 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.3020 3.5151 -1.2684 7 6 5.7468 3.2749 -1.7109 8 6 4.2835 3.4584 1.1674 9 8 4.0815 2.8838 2.2214 10 6 4.7716 4.8370 1.1680 11 6 4.9976 5.4727 2.3376 12 6 5.4875 6.8582 2.3382 13 6 5.7263 7.5192 1.1271 14 6 6.1809 8.8179 1.1325 15 6 6.4131 9.4711 2.3393 16 8 6.8656 10.7491 2.3399 17 6 6.9605 11.3641 3.5354 18 1 6.7602 10.8140 4.4431 19 6 7.3152 12.7035 3.6002 20 7 7.4073 13.3037 4.7667 21 14 7.6621 13.6548 2.0303 22 1 6.4037 14.2684 1.5352 23 1 8.6572 14.7216 2.3076 24 1 8.2010 12.7307 1.0004 25 6 6.1818 8.8165 3.5456 26 6 5.7227 7.5195 3.5499 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9329 0.9288 -0.8909 35 1 3.9338 0.9285 0.8891 36 1 3.6209 3.1314 -2.0281 37 1 4.1351 4.5841 -1.1375 38 1 5.9280 3.7890 -2.6549 39 1 6.4280 3.6585 -0.9514 40 1 5.9137 2.2057 -1.8419 41 1 4.9473 5.3481 0.2330 42 1 4.8175 4.9632 3.2727 43 1 5.5503 7.0117 0.1902 44 1 6.3618 9.3298 0.1988 45 1 7.6558 14.2403 4.8120 46 1 6.3630 9.3274 4.4796 47 1 5.5431 7.0124 4.4864 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298281554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:26 Heat of formation + Delta-G solvation = -38.141095 kcal Electronic energy + Delta-G solvation = -25162.118521 eV Core-core repulsion = 21503.544879 eV Total energy + Delta-G solvation = -3658.573642 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.00434 -39.31479 -37.13993 -36.48385 -35.05007 -33.24604 -32.47030 -31.10919 -30.53294 -29.27198 -28.07906 -25.71368 -24.45475 -23.73774 -22.48615 -22.14280 -21.39048 -20.09734 -18.62037 -17.93064 -17.53590 -17.26121 -16.25731 -15.62916 -15.30815 -14.96616 -14.90469 -14.15712 -14.11778 -14.01097 -13.96416 -13.84730 -13.64303 -13.28507 -12.99254 -12.84790 -12.65317 -12.59428 -12.40716 -12.20830 -11.88537 -11.77455 -11.62549 -11.50522 -11.37129 -11.25916 -11.17208 -11.02213 -10.82328 -10.74743 -10.27811 -9.72362 -9.64025 -9.54804 -8.94310 -8.75615 -8.47165 -7.23802 -6.60331 -4.24168 0.99558 2.03181 2.47632 2.94545 3.11579 3.15456 3.28650 3.52209 4.08643 4.42919 4.52318 4.60493 4.62738 4.70121 4.75682 4.83004 4.93920 4.99803 5.05456 5.09528 5.23534 5.31152 5.38794 5.41256 5.43027 5.47427 5.54144 5.55632 5.60717 5.63830 5.69086 5.84316 5.93266 5.95711 5.97055 6.03318 6.05619 6.29639 6.33837 6.51729 6.57541 6.67696 6.92836 7.08901 7.16175 7.39576 7.41681 7.62753 7.84139 8.29154 8.72990 9.33219 10.45932 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027405 B = 0.002060 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.473940 B =13586.582786 C =14061.156571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.135 4.135 4 C 0.117 3.883 5 N -0.616 5.616 6 C 0.106 3.894 7 C -0.173 4.173 8 C 0.556 3.444 9 O -0.556 6.556 10 C -0.279 4.279 11 C 0.034 3.966 12 C -0.188 4.188 13 C -0.045 4.045 14 C -0.199 4.199 15 C 0.173 3.827 16 O -0.203 6.203 17 C -0.392 4.392 18 H 0.111 0.889 19 C 0.066 3.934 20 N -0.867 5.867 21 Si 0.907 3.093 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.258 1.258 25 C -0.229 4.229 26 C -0.037 4.037 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.283 0.717 46 H 0.137 0.863 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.639 -20.549 -13.013 25.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.173 4.173 4 C -0.006 4.006 5 N -0.349 5.349 6 C -0.017 4.017 7 C -0.231 4.231 8 C 0.350 3.650 9 O -0.436 6.436 10 C -0.299 4.299 11 C 0.014 3.986 12 C -0.189 4.189 13 C -0.064 4.064 14 C -0.218 4.218 15 C 0.119 3.881 16 O -0.105 6.105 17 C -0.467 4.467 18 H 0.128 0.872 19 C -0.139 4.139 20 N -0.503 5.503 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.182 1.182 25 C -0.248 4.248 26 C -0.056 4.056 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.093 0.907 46 H 0.155 0.845 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.601 -20.446 -12.516 25.149 hybrid contribution 0.181 0.581 -0.534 0.810 sum -7.420 -19.865 -13.050 24.899 Atomic orbital electron populations 1.21758 0.95754 1.01504 1.01898 1.21447 0.96028 0.96462 1.02010 1.21980 0.95699 0.97083 1.02586 1.21411 0.93743 0.82635 1.02794 1.47839 1.66764 1.14107 1.06161 1.21570 0.96721 0.98226 0.85226 1.22229 0.96911 1.02130 1.01857 1.18421 0.76701 0.87055 0.82845 1.90770 1.53524 1.68348 1.30974 1.22591 1.13152 0.94765 0.99426 1.22319 0.86696 0.91709 0.97891 1.18529 1.12546 0.94215 0.93618 1.20865 0.95669 0.93150 0.96685 1.20139 1.09993 0.95673 0.96034 1.19359 0.90469 0.84797 0.93514 1.83504 1.71022 1.21784 1.34238 1.20875 1.48350 0.94647 0.82798 0.87201 1.24539 0.95467 0.95550 0.98378 1.69617 1.44117 1.12667 1.23870 0.86158 0.78847 0.79418 0.82407 1.19643 1.20523 1.18211 1.21221 1.08906 0.95933 0.98779 1.21045 0.94321 0.93661 0.96534 0.92840 0.92799 0.92654 0.92089 0.91801 0.91412 0.92047 0.91019 0.90020 0.90683 0.89819 0.91482 0.91857 0.92578 0.85654 0.85850 0.86358 0.86129 0.90664 0.84505 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.12 -0.86 5.93 -26.73 -0.16 -1.02 16 3 C -0.13 -1.16 5.54 -26.73 -0.15 -1.31 16 4 C 0.12 1.09 5.41 -4.04 -0.02 1.06 16 5 N -0.62 -6.58 2.47 -175.39 -0.43 -7.01 16 6 C 0.11 0.83 5.84 -4.04 -0.02 0.80 16 7 C -0.17 -1.26 10.24 37.16 0.38 -0.88 16 8 C 0.56 7.83 7.60 -13.04 -0.10 7.73 16 9 O -0.56 -9.67 15.81 5.16 0.08 -9.59 16 10 C -0.28 -3.73 8.61 -37.51 -0.32 -4.05 16 11 C 0.03 0.50 9.45 -37.19 -0.35 0.15 16 12 C -0.19 -3.08 5.87 -105.02 -0.62 -3.70 16 13 C -0.05 -0.72 9.40 -39.14 -0.37 -1.09 16 14 C -0.20 -3.67 9.97 -39.47 -0.39 -4.06 16 15 C 0.17 3.77 6.66 -38.89 -0.26 3.51 16 16 O -0.20 -5.05 8.57 0.73 0.01 -5.05 16 17 C -0.39 -10.49 9.94 30.91 0.31 -10.18 16 18 H 0.11 3.00 5.41 -52.48 -0.28 2.71 16 19 C 0.07 1.76 5.49 -17.51 -0.10 1.67 16 20 N -0.87 -23.92 13.96 55.48 0.77 -23.15 16 21 Si 0.91 20.57 28.62 -169.99 -4.86 15.70 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 25 C -0.23 -4.69 9.14 -39.47 -0.36 -5.05 16 26 C -0.04 -0.65 9.78 -39.15 -0.38 -1.03 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 35 H 0.08 0.90 7.42 -51.93 -0.39 0.51 16 36 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 37 H 0.08 0.65 6.09 -51.93 -0.32 0.33 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.13 1.43 4.21 -52.49 -0.22 1.21 16 42 H 0.12 1.85 7.52 -52.49 -0.39 1.46 16 43 H 0.12 1.50 6.16 -52.49 -0.32 1.18 16 44 H 0.12 2.03 8.06 -52.48 -0.42 1.60 16 45 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.14 2.92 5.62 -52.49 -0.29 2.63 16 47 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 389.96 15.07 5.88 5.88 Total: -1.00 -29.59 389.96 -8.37 -37.97 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.27 Total: 3.36 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -2.55 Total: -18.11 kcal Atomic # 7 Polarization: -30.50 SS G_CDS: 0.34 Total: -30.16 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.09 Total: -14.64 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.86 Total: 15.70 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.59 -8.37 -37.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298281554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.174 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds