Wall clock time and date at job start Tue Mar 31 2020 12:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47251 * 2 1 4 4 C 1.53001 * 109.47251 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47298 * 180.02562 * 4 3 2 6 6 C 1.46503 * 120.00230 * 270.00413 * 5 4 3 7 7 C 1.53001 * 109.46943 * 269.99885 * 6 5 4 8 8 C 1.34773 * 120.00415 * 89.99682 * 5 4 3 9 9 O 1.21729 * 119.99956 * 0.02562 * 8 5 4 10 10 C 1.46254 * 120.00587 * 179.97438 * 8 5 4 11 11 C 1.35023 * 120.00310 * 180.02562 * 10 8 5 12 12 C 1.46957 * 119.99860 * 180.02562 * 11 10 8 13 13 C 1.40027 * 120.10330 * 359.71768 * 12 11 10 14 14 C 1.37603 * 119.89527 * 179.79401 * 13 12 11 15 15 C 1.39167 * 120.10116 * 0.48869 * 14 13 12 16 16 O 1.35577 * 119.89656 * 179.76742 * 15 14 13 17 17 C 1.34777 * 116.99965 * 174.42496 * 16 15 14 18 18 H 1.08007 * 120.00251 * 5.04759 * 17 16 15 19 19 C 1.38716 * 120.00175 * 185.05653 * 17 16 15 20 20 N 1.31509 * 120.00309 * 179.97438 * 19 17 16 21 21 Si 1.86810 * 119.99753 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46607 * 90.00378 * 21 19 17 23 23 H 1.48499 * 109.47119 * 210.00148 * 21 19 17 24 24 H 1.48494 * 109.47014 * 330.00264 * 21 19 17 25 25 C 1.39178 * 120.20663 * 359.74407 * 15 14 13 26 26 C 1.37591 * 120.10059 * 0.02562 * 25 15 14 27 27 H 1.09002 * 109.47204 * 59.99806 * 1 2 3 28 28 H 1.09002 * 109.47194 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46732 * 299.99717 * 1 2 3 30 30 H 1.09003 * 109.47171 * 240.00125 * 2 1 3 31 31 H 1.08997 * 109.47209 * 120.00667 * 2 1 3 32 32 H 1.08999 * 109.47022 * 60.00461 * 3 2 1 33 33 H 1.08997 * 109.47559 * 300.00453 * 3 2 1 34 34 H 1.08999 * 109.46732 * 60.00283 * 4 3 2 35 35 H 1.09002 * 109.47204 * 300.00194 * 4 3 2 36 36 H 1.09001 * 109.47076 * 29.99229 * 6 5 4 37 37 H 1.08991 * 109.47650 * 149.99631 * 6 5 4 38 38 H 1.09001 * 109.47233 * 179.97438 * 7 6 5 39 39 H 1.08997 * 109.47391 * 299.99755 * 7 6 5 40 40 H 1.09004 * 109.46857 * 59.99646 * 7 6 5 41 41 H 1.07997 * 119.99741 * 0.28440 * 10 8 5 42 42 H 1.07997 * 119.99788 * 359.97438 * 11 10 8 43 43 H 1.07994 * 120.04849 * 0.02562 * 13 12 11 44 44 H 1.08003 * 119.94377 * 180.23113 * 14 13 12 45 45 H 0.96999 * 119.99916 * 179.97438 * 20 19 17 46 46 H 1.07997 * 119.94866 * 180.02562 * 25 15 14 47 47 H 1.07998 * 120.05327 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.3020 3.5151 -1.2684 7 6 5.7468 3.2749 -1.7109 8 6 4.2835 3.4584 1.1674 9 8 4.0815 2.8838 2.2214 10 6 4.7716 4.8370 1.1680 11 6 4.9976 5.4727 2.3376 12 6 5.4875 6.8582 2.3382 13 6 5.7263 7.5192 1.1271 14 6 6.1809 8.8179 1.1325 15 6 6.4131 9.4711 2.3393 16 8 6.8656 10.7491 2.3399 17 6 6.9605 11.3641 3.5354 18 1 6.7602 10.8140 4.4431 19 6 7.3152 12.7035 3.6002 20 7 7.4073 13.3037 4.7667 21 14 7.6621 13.6548 2.0303 22 1 6.4037 14.2684 1.5352 23 1 8.6572 14.7216 2.3076 24 1 8.2010 12.7307 1.0004 25 6 6.1818 8.8165 3.5456 26 6 5.7227 7.5195 3.5499 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9329 0.9288 -0.8909 35 1 3.9338 0.9285 0.8891 36 1 3.6209 3.1314 -2.0281 37 1 4.1351 4.5841 -1.1375 38 1 5.9280 3.7890 -2.6549 39 1 6.4280 3.6585 -0.9514 40 1 5.9137 2.2057 -1.8419 41 1 4.9473 5.3481 0.2330 42 1 4.8175 4.9632 3.2727 43 1 5.5503 7.0117 0.1902 44 1 6.3618 9.3298 0.1988 45 1 7.6558 14.2403 4.8120 46 1 6.3630 9.3274 4.4796 47 1 5.5431 7.0124 4.4864 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298281554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:25 Heat of formation + Delta-G solvation = -52.796813 kcal Electronic energy + Delta-G solvation = -25162.754041 eV Core-core repulsion = 21503.544879 eV Total energy + Delta-G solvation = -3659.209162 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.12211 -40.82844 -38.64843 -37.44672 -35.75684 -34.75053 -34.17436 -32.02249 -31.77681 -30.34913 -29.19261 -27.44501 -25.48396 -24.45157 -23.87956 -23.38740 -22.10201 -21.35341 -20.07189 -19.29516 -19.07393 -18.43987 -17.24107 -16.63461 -16.53980 -16.19693 -16.04433 -15.80034 -15.60361 -15.42006 -14.89809 -14.75531 -14.56789 -14.39172 -14.23921 -14.07327 -13.96144 -13.67793 -13.39674 -13.28435 -13.17001 -12.76509 -12.72260 -12.61416 -12.35559 -12.25371 -12.14322 -11.97030 -11.93405 -11.89124 -11.46430 -11.31116 -11.15890 -10.83994 -10.66935 -9.92640 -9.66281 -8.74239 -8.53625 -6.25555 -0.29606 0.54287 1.09489 1.32750 1.37567 1.52602 2.08176 2.26344 2.34000 2.79998 2.99820 3.14631 3.58662 3.89267 3.96872 3.97284 4.02816 4.10420 4.21589 4.24099 4.30259 4.38868 4.42049 4.45915 4.58983 4.64206 4.65729 4.75720 4.82658 4.85017 4.90169 4.97765 5.01979 5.08575 5.12279 5.19250 5.25207 5.26706 5.34273 5.39032 5.41932 5.44319 5.55978 5.69732 5.71051 5.78921 5.82890 6.13703 6.43950 6.79410 7.22147 7.50309 8.57156 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.027405 B = 0.002060 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.473940 B =13586.582786 C =14061.156571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.127 4.127 4 C 0.114 3.886 5 N -0.607 5.607 6 C 0.097 3.903 7 C -0.170 4.170 8 C 0.545 3.455 9 O -0.596 6.596 10 C -0.241 4.241 11 C 0.009 3.991 12 C -0.160 4.160 13 C -0.039 4.039 14 C -0.192 4.192 15 C 0.137 3.863 16 O -0.232 6.232 17 C -0.404 4.404 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.917 5.917 21 Si 0.972 3.028 22 H -0.265 1.265 23 H -0.268 1.268 24 H -0.259 1.259 25 C -0.243 4.243 26 C -0.046 4.046 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.046 0.954 40 H 0.057 0.943 41 H 0.155 0.845 42 H 0.119 0.881 43 H 0.165 0.835 44 H 0.141 0.859 45 H 0.286 0.714 46 H 0.113 0.887 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.601 -23.337 -17.423 30.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.009 4.009 5 N -0.338 5.338 6 C -0.025 4.025 7 C -0.228 4.228 8 C 0.338 3.662 9 O -0.479 6.479 10 C -0.261 4.261 11 C -0.010 4.010 12 C -0.160 4.160 13 C -0.057 4.057 14 C -0.211 4.211 15 C 0.086 3.914 16 O -0.139 6.139 17 C -0.480 4.480 18 H 0.101 0.899 19 C -0.187 4.187 20 N -0.557 5.557 21 Si 0.794 3.206 22 H -0.189 1.189 23 H -0.193 1.193 24 H -0.183 1.183 25 C -0.262 4.262 26 C -0.065 4.065 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.173 0.827 42 H 0.137 0.863 43 H 0.182 0.818 44 H 0.159 0.841 45 H 0.096 0.904 46 H 0.131 0.869 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.584 -23.303 -16.978 30.083 hybrid contribution 0.265 0.805 0.675 1.084 sum -8.318 -22.497 -16.303 29.002 Atomic orbital electron populations 1.21763 0.95479 1.02069 1.01648 1.21437 0.96253 0.95479 1.02530 1.21897 0.95089 0.97933 1.01665 1.21555 0.94179 0.81904 1.03226 1.47978 1.64928 1.14563 1.06293 1.21890 0.97868 0.98511 0.84190 1.22206 0.95818 1.02532 1.02265 1.18631 0.76879 0.87383 0.83349 1.90767 1.55237 1.69192 1.32735 1.22900 1.09018 0.94232 0.99955 1.22181 0.89146 0.91048 0.98672 1.18803 1.09280 0.94580 0.93368 1.21319 0.93960 0.92138 0.98245 1.20491 1.08703 0.96441 0.95445 1.19934 0.91868 0.84336 0.95265 1.83460 1.74429 1.23301 1.32666 1.20753 1.49067 0.95113 0.83060 0.89905 1.25341 0.95565 0.96353 1.01488 1.69706 1.47008 1.13219 1.25734 0.85200 0.79001 0.78033 0.78412 1.18948 1.19310 1.18286 1.21217 1.09895 0.97197 0.97884 1.21277 0.94129 0.92627 0.98424 0.92161 0.91877 0.93841 0.90202 0.92641 0.94442 0.90719 0.87927 0.92218 0.88059 0.89127 0.89487 0.93493 0.92393 0.82730 0.86304 0.81778 0.84145 0.90386 0.86884 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.02 16 2 C -0.12 -1.41 5.93 30.59 0.18 -1.23 16 3 C -0.13 -1.89 5.54 30.59 0.17 -1.72 16 4 C 0.11 1.78 5.41 86.38 0.47 2.25 16 5 N -0.61 -10.80 2.47 -827.02 -2.04 -12.84 16 6 C 0.10 1.01 5.84 86.38 0.50 1.52 16 7 C -0.17 -1.65 10.24 71.98 0.74 -0.91 16 8 C 0.54 13.86 7.60 86.33 0.66 14.52 16 9 O -0.60 -20.12 15.81 -4.44 -0.07 -20.19 16 10 C -0.24 -5.49 8.61 23.61 0.20 -5.29 16 11 C 0.01 0.25 9.45 23.82 0.23 0.48 16 12 C -0.16 -4.82 5.87 -20.12 -0.12 -4.93 16 13 C -0.04 -1.09 9.40 22.55 0.21 -0.88 16 14 C -0.19 -6.67 9.97 22.34 0.22 -6.44 16 15 C 0.14 6.07 6.66 22.72 0.15 6.22 16 16 O -0.23 -12.06 8.57 -20.30 -0.17 -12.24 16 17 C -0.40 -23.08 9.94 67.93 0.68 -22.41 16 18 H 0.08 4.98 5.41 -2.91 -0.02 4.96 16 19 C 0.01 0.68 5.49 84.86 0.47 1.14 16 20 N -0.92 -53.54 13.96 21.62 0.30 -53.24 16 21 Si 0.97 43.69 28.62 68.60 1.96 45.65 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 25 C -0.24 -10.36 9.14 22.34 0.20 -10.15 16 26 C -0.05 -1.61 9.78 22.55 0.22 -1.39 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.10 1.01 8.07 -2.39 -0.02 0.99 16 35 H 0.06 1.23 7.42 -2.39 -0.02 1.21 16 36 H 0.10 0.62 8.07 -2.39 -0.02 0.60 16 37 H 0.09 0.85 6.09 -2.39 -0.01 0.84 16 38 H 0.09 0.54 8.14 -2.39 -0.02 0.53 16 39 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.16 2.57 4.21 -2.91 -0.01 2.56 16 42 H 0.12 3.39 7.52 -2.91 -0.02 3.37 16 43 H 0.16 3.08 6.16 -2.91 -0.02 3.07 16 44 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 45 H 0.29 15.30 8.31 -92.71 -0.77 14.53 16 46 H 0.11 5.32 5.62 -2.91 -0.02 5.30 16 47 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -69.83 389.96 6.82 -63.01 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.95 Total: 20.10 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 5.89 Total: -30.25 kcal Atomic # 7 Polarization: -64.34 SS G_CDS: -1.74 Total: -66.09 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.24 Total: -32.43 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.96 Total: 45.65 kcal Total: -69.83 6.82 -63.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298281554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.213 kcal (2) G-P(sol) polarization free energy of solvation -69.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds