Wall clock time and date at job start Tue Mar 31 2020 12:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47054 * 2 1 4 4 O 1.42902 * 109.46591 * 240.00195 * 2 1 3 5 5 C 1.52994 * 109.47305 * 120.00418 * 2 1 3 6 6 H 1.09008 * 109.99866 * 63.55308 * 5 2 1 7 7 C 1.54329 * 109.88308 * 302.45876 * 5 2 1 8 8 C 1.55149 * 102.94347 * 218.38782 * 7 5 2 9 9 C 1.54694 * 101.67438 * 35.33525 * 8 7 5 10 10 N 1.47017 * 109.88603 * 184.64977 * 5 2 1 11 11 C 1.34773 * 125.64704 * 298.32585 * 10 5 2 12 12 O 1.21286 * 120.00183 * 355.44003 * 11 10 5 13 13 C 1.50705 * 120.00152 * 175.44159 * 11 10 5 14 14 C 1.50703 * 109.47144 * 179.97438 * 13 11 10 15 15 C 1.37639 * 120.12530 * 265.00307 * 14 13 11 16 16 C 1.38615 * 120.24800 * 179.97438 * 15 14 13 17 17 C 1.38661 * 120.49523 * 0.02562 * 16 15 14 18 18 C 1.37591 * 120.25606 * 359.97438 * 17 16 15 19 19 C 1.40690 * 120.12615 * 84.97872 * 14 13 11 20 20 C 1.41399 * 120.24631 * 0.02562 * 19 14 13 21 21 H 1.08002 * 119.99753 * 328.23766 * 20 19 14 22 22 C 1.39948 * 119.99903 * 148.23715 * 20 19 14 23 23 N 1.30828 * 119.99614 * 163.17123 * 22 20 19 24 24 Si 1.86796 * 120.00149 * 343.17288 * 22 20 19 25 25 H 1.48497 * 109.47486 * 91.78575 * 24 22 20 26 26 H 1.48503 * 109.46916 * 211.78582 * 24 22 20 27 27 H 1.48502 * 109.46915 * 331.77879 * 24 22 20 28 28 H 1.08997 * 109.47064 * 305.69354 * 1 2 3 29 29 H 1.08997 * 109.47354 * 65.69722 * 1 2 3 30 30 H 1.09002 * 109.47448 * 185.69660 * 1 2 3 31 31 H 1.08995 * 109.47153 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47405 * 300.00303 * 3 2 1 33 33 H 1.09005 * 109.46615 * 60.00482 * 3 2 1 34 34 H 0.96705 * 113.99439 * 161.05553 * 4 2 1 35 35 H 1.09000 * 110.71992 * 336.75471 * 7 5 2 36 36 H 1.09001 * 110.72070 * 99.84962 * 7 5 2 37 37 H 1.09002 * 111.00700 * 153.57204 * 8 7 5 38 38 H 1.08995 * 111.01022 * 277.42913 * 8 7 5 39 39 H 1.09007 * 110.39191 * 204.35961 * 9 8 7 40 40 H 1.08996 * 110.23805 * 82.11600 * 9 8 7 41 41 H 1.09004 * 109.46449 * 59.99788 * 13 11 10 42 42 H 1.08992 * 109.46979 * 299.99780 * 13 11 10 43 43 H 1.07996 * 119.88171 * 359.95309 * 15 14 13 44 44 H 1.07997 * 119.75356 * 179.97438 * 16 15 14 45 45 H 1.08006 * 119.86880 * 179.70164 * 17 16 15 46 46 H 1.07995 * 120.13471 * 179.97438 * 18 17 16 47 47 H 0.97000 * 119.99509 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0401 -0.7213 1.2491 6 1 1.7342 -1.7674 1.2266 7 6 1.4807 -0.0381 2.5149 8 6 2.6772 -0.0998 3.5006 9 6 3.8794 0.0909 2.5460 10 7 3.5059 -0.6303 1.3157 11 6 4.3659 -1.1286 0.4055 12 8 3.9500 -1.7824 -0.5276 13 6 5.8445 -0.8735 0.5470 14 6 6.5795 -1.5345 -0.5905 15 6 7.1153 -2.7920 -0.4288 16 6 7.7914 -3.4025 -1.4736 17 6 7.9364 -2.7556 -2.6914 18 6 7.4090 -1.4982 -2.8756 19 6 6.7201 -0.8688 -1.8220 20 6 6.1738 0.4232 -1.9996 21 1 5.2721 0.7049 -1.4762 22 6 6.8016 1.3370 -2.8537 23 7 6.1502 2.3889 -3.2789 24 14 8.5696 1.0548 -3.3865 25 1 8.5870 0.2901 -4.6594 26 1 9.2413 2.3640 -3.5864 27 1 9.2861 0.2859 -2.3373 28 1 -0.3633 0.5996 0.8346 29 1 -0.3634 0.4229 -0.9366 30 1 -0.3634 -1.0226 0.1020 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 2.9252 -0.4714 -1.3902 35 1 1.2062 0.9958 2.3057 36 1 0.6265 -0.5909 2.9060 37 1 2.6240 0.7079 4.2307 38 1 2.7260 -1.0695 3.9959 39 1 4.7813 -0.3411 2.9799 40 1 4.0289 1.1496 2.3346 41 1 6.1951 -1.2850 1.4936 42 1 6.0316 0.2000 0.5259 43 1 7.0089 -3.3048 0.5156 44 1 8.2090 -4.3892 -1.3379 45 1 8.4693 -3.2387 -3.4971 46 1 7.5234 -0.9959 -3.8248 47 1 6.5853 3.0220 -3.8711 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305851657.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:50 Heat of formation + Delta-G solvation = -67.400318 kcal Electronic energy + Delta-G solvation = -28489.264967 eV Core-core repulsion = 24829.422550 eV Total energy + Delta-G solvation = -3659.842417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.42479 -38.26933 -37.00842 -36.24432 -33.55640 -32.30947 -31.74747 -31.03455 -30.28987 -28.21371 -27.21465 -26.77604 -24.89634 -23.43135 -21.77127 -21.38486 -20.49484 -19.31416 -18.27658 -17.35163 -17.04130 -16.62902 -15.86090 -15.58078 -14.89300 -14.78597 -14.42552 -14.14786 -13.81233 -13.61540 -13.44251 -13.24188 -12.78675 -12.69741 -12.52501 -12.14362 -12.09648 -12.01604 -11.96690 -11.77155 -11.61732 -11.38645 -11.28888 -11.22477 -11.06604 -10.84424 -10.77010 -10.70784 -10.28403 -10.20860 -9.69456 -9.58720 -9.52891 -9.11348 -9.07867 -8.15095 -7.57983 -7.47104 -6.90467 -4.46347 2.57100 2.73488 3.14662 3.19694 3.23702 3.33356 3.39373 4.00712 4.43393 4.50857 4.54856 4.73886 4.89095 5.03877 5.20967 5.26206 5.29875 5.36446 5.47853 5.59258 5.64462 5.68053 5.71187 5.76116 5.83675 5.90761 5.94422 5.99242 6.07541 6.11285 6.15873 6.21181 6.27565 6.29646 6.36536 6.49881 6.59348 6.71678 6.76632 6.97647 7.23084 7.44960 7.68361 7.76595 7.90360 7.94330 8.16050 8.33163 8.43690 8.69798 8.84549 8.85336 10.11685 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014713 B = 0.005095 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.617147 B = 5493.881833 C = 6237.168618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.119 3.881 3 C -0.178 4.178 4 O -0.552 6.552 5 C 0.117 3.883 6 H 0.075 0.925 7 C -0.129 4.129 8 C -0.132 4.132 9 C 0.100 3.900 10 N -0.624 5.624 11 C 0.526 3.474 12 O -0.501 6.501 13 C -0.069 4.069 14 C -0.165 4.165 15 C -0.069 4.069 16 C -0.239 4.239 17 C -0.081 4.081 18 C -0.232 4.232 19 C 0.110 3.890 20 C -0.446 4.446 21 H 0.086 0.914 22 C 0.086 3.914 23 N -0.811 5.811 24 Si 0.910 3.090 25 H -0.270 1.270 26 H -0.293 1.293 27 H -0.247 1.247 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.388 0.612 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.101 0.899 47 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.049 0.229 12.795 14.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.077 3.923 3 C -0.235 4.235 4 O -0.366 6.366 5 C 0.013 3.987 6 H 0.093 0.907 7 C -0.167 4.167 8 C -0.170 4.170 9 C -0.023 4.023 10 N -0.361 5.361 11 C 0.316 3.684 12 O -0.375 6.375 13 C -0.109 4.109 14 C -0.167 4.167 15 C -0.088 4.088 16 C -0.258 4.258 17 C -0.099 4.099 18 C -0.251 4.251 19 C 0.107 3.893 20 C -0.475 4.475 21 H 0.104 0.896 22 C -0.133 4.133 23 N -0.436 5.436 24 Si 0.737 3.263 25 H -0.196 1.196 26 H -0.221 1.221 27 H -0.170 1.170 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.244 0.756 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.117 0.883 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.119 0.881 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.831 -0.138 12.071 13.870 hybrid contribution 1.273 0.275 -0.307 1.338 sum -5.557 0.137 11.763 13.011 Atomic orbital electron populations 1.21769 0.93387 1.02182 1.02143 1.21385 0.94081 0.90921 0.85945 1.22537 1.02532 0.96466 1.02008 1.86484 1.35561 1.70792 1.43722 1.22209 0.81127 1.00132 0.95191 0.90707 1.22779 0.97963 1.01726 0.94255 1.22726 0.94464 1.02611 0.97232 1.22235 0.98028 0.97182 0.84890 1.48737 1.05719 1.58111 1.23576 1.20955 0.88486 0.78036 0.80887 1.90658 1.78576 1.37317 1.30975 1.20296 0.89475 1.03047 0.98067 1.19093 1.06907 0.96609 0.94108 1.20431 0.97216 0.94021 0.97082 1.20346 1.10105 1.00290 0.95044 1.20612 0.98202 0.95031 0.96060 1.21074 1.08823 0.96509 0.98705 1.17484 0.89147 0.93023 0.89640 1.19323 1.10094 0.95683 1.22396 0.89570 1.26106 1.00329 0.94322 0.92508 1.69694 1.37809 1.11007 1.25062 0.86364 0.82389 0.76899 0.80693 1.19635 1.22063 1.17002 0.91681 0.91856 0.92239 0.91664 0.91947 0.92074 0.75640 0.90054 0.90323 0.90016 0.90805 0.90644 0.91437 0.90582 0.88263 0.89174 0.89016 0.89009 0.88128 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.45 37.16 0.31 -1.44 16 2 C 0.12 1.87 0.95 -90.62 -0.09 1.78 16 3 C -0.18 -2.67 8.21 37.16 0.31 -2.37 16 4 O -0.55 -11.57 11.49 -59.10 -0.68 -12.25 16 5 C 0.12 1.66 2.54 -66.96 -0.17 1.49 16 6 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 7 C -0.13 -1.26 5.27 -24.90 -0.13 -1.39 16 8 C -0.13 -1.15 7.07 -24.70 -0.17 -1.32 16 9 C 0.10 1.12 6.64 -2.65 -0.02 1.11 16 10 N -0.62 -9.52 2.13 -163.15 -0.35 -9.87 16 11 C 0.53 10.16 6.67 -10.98 -0.07 10.09 16 12 O -0.50 -11.75 12.63 -18.31 -0.23 -11.98 16 13 C -0.07 -1.31 4.29 -29.03 -0.12 -1.44 16 14 C -0.17 -3.76 4.43 -103.91 -0.46 -4.22 16 15 C -0.07 -1.49 9.66 -39.66 -0.38 -1.88 16 16 C -0.24 -5.16 10.05 -39.29 -0.39 -5.55 16 17 C -0.08 -1.83 10.02 -39.66 -0.40 -2.22 16 18 C -0.23 -5.76 7.24 -38.87 -0.28 -6.04 16 19 C 0.11 2.78 5.07 -106.82 -0.54 2.23 16 20 C -0.45 -11.68 8.52 -37.74 -0.32 -12.00 16 21 H 0.09 2.34 7.06 -52.49 -0.37 1.97 16 22 C 0.09 2.21 5.41 -17.34 -0.09 2.12 16 23 N -0.81 -21.31 13.93 55.55 0.77 -20.54 16 24 Si 0.91 20.82 24.56 -169.99 -4.18 16.65 16 25 H -0.27 -6.13 6.57 56.52 0.37 -5.75 16 26 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.25 -5.76 7.00 56.52 0.40 -5.36 16 28 H 0.06 0.64 7.10 -51.93 -0.37 0.27 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.13 7.47 -51.93 -0.39 0.74 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.73 6.22 -51.93 -0.32 0.41 16 34 H 0.39 9.04 5.89 45.56 0.27 9.31 16 35 H 0.08 0.74 5.48 -51.93 -0.28 0.45 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.77 7.51 -51.93 -0.39 0.38 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 1.20 7.68 -51.93 -0.40 0.80 16 42 H 0.10 1.89 7.16 -51.93 -0.37 1.52 16 43 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 44 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 45 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 46 H 0.10 2.50 4.79 -52.49 -0.25 2.25 16 47 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 LS Contribution 359.87 15.07 5.42 5.42 Total: -1.00 -30.32 359.87 -8.97 -39.29 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -6.70 Total: 14.33 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: -3.03 Total: -21.05 kcal Atomic # 7 Polarization: -30.84 SS G_CDS: 0.43 Total: -30.41 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.91 Total: -24.23 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.18 Total: 16.65 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.32 -8.97 -39.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305851657.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.110 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds