Wall clock time and date at job start Tue Mar 31 2020 12:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47054 * 2 1 4 4 O 1.42902 * 109.46591 * 240.00195 * 2 1 3 5 5 C 1.52994 * 109.47305 * 120.00418 * 2 1 3 6 6 H 1.09008 * 109.99866 * 63.55308 * 5 2 1 7 7 C 1.54329 * 109.88308 * 302.45876 * 5 2 1 8 8 C 1.55149 * 102.94347 * 218.38782 * 7 5 2 9 9 C 1.54694 * 101.67438 * 35.33525 * 8 7 5 10 10 N 1.47017 * 109.88603 * 184.64977 * 5 2 1 11 11 C 1.34773 * 125.64704 * 298.32585 * 10 5 2 12 12 O 1.21286 * 120.00183 * 355.44003 * 11 10 5 13 13 C 1.50705 * 120.00152 * 175.44159 * 11 10 5 14 14 C 1.50703 * 109.47144 * 179.97438 * 13 11 10 15 15 C 1.37639 * 120.12530 * 265.00307 * 14 13 11 16 16 C 1.38615 * 120.24800 * 179.97438 * 15 14 13 17 17 C 1.38661 * 120.49523 * 0.02562 * 16 15 14 18 18 C 1.37591 * 120.25606 * 359.97438 * 17 16 15 19 19 C 1.40690 * 120.12615 * 84.97872 * 14 13 11 20 20 C 1.41399 * 120.24631 * 0.02562 * 19 14 13 21 21 H 1.08002 * 119.99753 * 328.23766 * 20 19 14 22 22 C 1.39948 * 119.99903 * 148.23715 * 20 19 14 23 23 N 1.30828 * 119.99614 * 163.17123 * 22 20 19 24 24 Si 1.86796 * 120.00149 * 343.17288 * 22 20 19 25 25 H 1.48497 * 109.47486 * 91.78575 * 24 22 20 26 26 H 1.48503 * 109.46916 * 211.78582 * 24 22 20 27 27 H 1.48502 * 109.46915 * 331.77879 * 24 22 20 28 28 H 1.08997 * 109.47064 * 305.69354 * 1 2 3 29 29 H 1.08997 * 109.47354 * 65.69722 * 1 2 3 30 30 H 1.09002 * 109.47448 * 185.69660 * 1 2 3 31 31 H 1.08995 * 109.47153 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47405 * 300.00303 * 3 2 1 33 33 H 1.09005 * 109.46615 * 60.00482 * 3 2 1 34 34 H 0.96705 * 113.99439 * 161.05553 * 4 2 1 35 35 H 1.09000 * 110.71992 * 336.75471 * 7 5 2 36 36 H 1.09001 * 110.72070 * 99.84962 * 7 5 2 37 37 H 1.09002 * 111.00700 * 153.57204 * 8 7 5 38 38 H 1.08995 * 111.01022 * 277.42913 * 8 7 5 39 39 H 1.09007 * 110.39191 * 204.35961 * 9 8 7 40 40 H 1.08996 * 110.23805 * 82.11600 * 9 8 7 41 41 H 1.09004 * 109.46449 * 59.99788 * 13 11 10 42 42 H 1.08992 * 109.46979 * 299.99780 * 13 11 10 43 43 H 1.07996 * 119.88171 * 359.95309 * 15 14 13 44 44 H 1.07997 * 119.75356 * 179.97438 * 16 15 14 45 45 H 1.08006 * 119.86880 * 179.70164 * 17 16 15 46 46 H 1.07995 * 120.13471 * 179.97438 * 18 17 16 47 47 H 0.97000 * 119.99509 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0401 -0.7213 1.2491 6 1 1.7342 -1.7674 1.2266 7 6 1.4807 -0.0381 2.5149 8 6 2.6772 -0.0998 3.5006 9 6 3.8794 0.0909 2.5460 10 7 3.5059 -0.6303 1.3157 11 6 4.3659 -1.1286 0.4055 12 8 3.9500 -1.7824 -0.5276 13 6 5.8445 -0.8735 0.5470 14 6 6.5795 -1.5345 -0.5905 15 6 7.1153 -2.7920 -0.4288 16 6 7.7914 -3.4025 -1.4736 17 6 7.9364 -2.7556 -2.6914 18 6 7.4090 -1.4982 -2.8756 19 6 6.7201 -0.8688 -1.8220 20 6 6.1738 0.4232 -1.9996 21 1 5.2721 0.7049 -1.4762 22 6 6.8016 1.3370 -2.8537 23 7 6.1502 2.3889 -3.2789 24 14 8.5696 1.0548 -3.3865 25 1 8.5870 0.2901 -4.6594 26 1 9.2413 2.3640 -3.5864 27 1 9.2861 0.2859 -2.3373 28 1 -0.3633 0.5996 0.8346 29 1 -0.3634 0.4229 -0.9366 30 1 -0.3634 -1.0226 0.1020 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9562 0.8901 34 1 2.9252 -0.4714 -1.3902 35 1 1.2062 0.9958 2.3057 36 1 0.6265 -0.5909 2.9060 37 1 2.6240 0.7079 4.2307 38 1 2.7260 -1.0695 3.9959 39 1 4.7813 -0.3411 2.9799 40 1 4.0289 1.1496 2.3346 41 1 6.1951 -1.2850 1.4936 42 1 6.0316 0.2000 0.5259 43 1 7.0089 -3.3048 0.5156 44 1 8.2090 -4.3892 -1.3379 45 1 8.4693 -3.2387 -3.4971 46 1 7.5234 -0.9959 -3.8248 47 1 6.5853 3.0220 -3.8711 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305851657.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:49 Heat of formation + Delta-G solvation = -85.262135 kcal Electronic energy + Delta-G solvation = -28490.039513 eV Core-core repulsion = 24829.422550 eV Total energy + Delta-G solvation = -3660.616964 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.68668 -39.89093 -38.56663 -37.50440 -35.46299 -33.76091 -33.24645 -32.23726 -32.08205 -29.36233 -28.55230 -28.10079 -26.70736 -24.62766 -23.19297 -22.71877 -21.98555 -20.73574 -19.59238 -19.24031 -18.39838 -17.90844 -17.53416 -16.92295 -16.34724 -16.23640 -16.00112 -15.67453 -15.47144 -14.93250 -14.86947 -14.51106 -14.24468 -14.04568 -13.76314 -13.75084 -13.65048 -13.16970 -13.12806 -13.08740 -12.94482 -12.87697 -12.65452 -12.57509 -12.50617 -12.47409 -12.06636 -11.98650 -11.74236 -11.54271 -11.41486 -11.35124 -10.95606 -10.88255 -10.62895 -9.42736 -9.39494 -9.28016 -8.83926 -6.43222 0.79409 0.90011 1.27585 1.38811 1.48308 1.76181 2.12881 2.15871 2.66399 3.29788 3.49408 3.63507 3.72979 3.85042 4.03356 4.07992 4.10755 4.18672 4.27736 4.37418 4.41925 4.45993 4.55344 4.59225 4.65359 4.69923 4.77903 4.81620 4.86677 4.92901 4.94565 4.97126 5.02508 5.09863 5.14659 5.17265 5.21132 5.26954 5.38507 5.41072 5.57178 5.68155 5.87268 5.95642 6.05570 6.30199 6.46100 6.61490 6.79742 6.81462 6.92751 7.40314 8.23388 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014713 B = 0.005095 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.617147 B = 5493.881833 C = 6237.168618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.103 3.897 3 C -0.168 4.168 4 O -0.581 6.581 5 C 0.114 3.886 6 H 0.053 0.947 7 C -0.120 4.120 8 C -0.119 4.119 9 C 0.086 3.914 10 N -0.620 5.620 11 C 0.523 3.477 12 O -0.554 6.554 13 C -0.066 4.066 14 C -0.169 4.169 15 C -0.080 4.080 16 C -0.228 4.228 17 C -0.093 4.093 18 C -0.256 4.256 19 C 0.085 3.915 20 C -0.465 4.465 21 H 0.059 0.941 22 C 0.050 3.950 23 N -0.851 5.851 24 Si 0.960 3.040 25 H -0.270 1.270 26 H -0.279 1.279 27 H -0.254 1.254 28 H 0.104 0.896 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.034 0.966 32 H 0.046 0.954 33 H 0.100 0.900 34 H 0.371 0.629 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.123 0.877 44 H 0.127 0.873 45 H 0.120 0.880 46 H 0.091 0.909 47 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.998 -0.546 16.047 17.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.061 3.939 3 C -0.225 4.225 4 O -0.393 6.393 5 C 0.010 3.990 6 H 0.071 0.929 7 C -0.158 4.158 8 C -0.156 4.156 9 C -0.036 4.036 10 N -0.354 5.354 11 C 0.313 3.687 12 O -0.433 6.433 13 C -0.105 4.105 14 C -0.171 4.171 15 C -0.098 4.098 16 C -0.247 4.247 17 C -0.111 4.111 18 C -0.275 4.275 19 C 0.083 3.917 20 C -0.495 4.495 21 H 0.077 0.923 22 C -0.163 4.163 23 N -0.478 5.478 24 Si 0.785 3.215 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.177 1.177 28 H 0.123 0.877 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.118 0.882 34 H 0.225 0.775 35 H 0.112 0.888 36 H 0.121 0.879 37 H 0.132 0.868 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.130 0.870 42 H 0.110 0.890 43 H 0.141 0.859 44 H 0.145 0.855 45 H 0.138 0.862 46 H 0.109 0.891 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.802 -0.888 15.379 16.840 hybrid contribution 1.206 0.359 -1.209 1.745 sum -5.596 -0.529 14.170 15.244 Atomic orbital electron populations 1.21797 0.90924 1.02905 1.03315 1.21877 0.95952 0.90931 0.85099 1.22445 1.00459 0.96492 1.03132 1.86451 1.34278 1.72112 1.46487 1.22312 0.80514 0.99321 0.96809 0.92883 1.22823 0.99015 1.02137 0.91800 1.22741 0.91872 1.04330 0.96698 1.22614 1.00209 0.96973 0.83760 1.48714 1.06092 1.56801 1.23822 1.20901 0.88996 0.77876 0.80882 1.90630 1.79362 1.40116 1.33145 1.20280 0.89393 1.02440 0.98388 1.19549 1.06060 0.97153 0.94301 1.20875 0.96570 0.93635 0.98730 1.20861 1.08235 1.01358 0.94251 1.20974 0.98186 0.94280 0.97624 1.21206 1.10069 0.97841 0.98395 1.17715 0.89957 0.93015 0.91058 1.19248 1.09914 0.96858 1.23518 0.92311 1.26687 1.03063 0.94063 0.92530 1.69734 1.39141 1.12189 1.26722 0.85587 0.78844 0.77145 0.79942 1.19559 1.20529 1.17726 0.87709 0.92882 0.92305 0.94693 0.93477 0.88186 0.77530 0.88756 0.87880 0.86766 0.90105 0.89334 0.91101 0.86965 0.89032 0.85879 0.85528 0.86224 0.89099 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.45 71.98 0.61 -2.62 16 2 C 0.10 3.26 0.95 -10.79 -0.01 3.25 16 3 C -0.17 -5.12 8.21 71.98 0.59 -4.53 16 4 O -0.58 -26.14 11.49 -126.16 -1.45 -27.59 16 5 C 0.11 3.14 2.54 45.34 0.12 3.26 16 6 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 7 C -0.12 -1.87 5.27 31.78 0.17 -1.70 16 8 C -0.12 -1.53 7.07 31.91 0.23 -1.31 16 9 C 0.09 1.73 6.64 86.78 0.58 2.31 16 10 N -0.62 -18.66 2.13 -788.49 -1.68 -20.35 16 11 C 0.52 20.73 6.67 87.66 0.58 21.32 16 12 O -0.55 -27.34 12.63 19.77 0.25 -27.09 16 13 C -0.07 -2.49 4.29 29.10 0.12 -2.36 16 14 C -0.17 -7.71 4.43 -19.41 -0.09 -7.80 16 15 C -0.08 -3.30 9.66 22.22 0.21 -3.08 16 16 C -0.23 -9.26 10.05 22.46 0.23 -9.03 16 17 C -0.09 -4.06 10.02 22.22 0.22 -3.84 16 18 C -0.26 -12.90 7.24 22.73 0.16 -12.73 16 19 C 0.08 4.43 5.07 -21.29 -0.11 4.32 16 20 C -0.47 -25.88 8.52 23.46 0.20 -25.68 16 21 H 0.06 3.48 7.06 -2.91 -0.02 3.46 16 22 C 0.05 2.73 5.41 85.26 0.46 3.19 16 23 N -0.85 -47.14 13.93 21.83 0.30 -46.84 16 24 Si 0.96 44.16 24.56 68.60 1.69 45.85 16 25 H -0.27 -12.20 6.57 99.48 0.65 -11.55 16 26 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 27 H -0.25 -11.78 7.00 99.48 0.70 -11.09 16 28 H 0.10 1.70 7.10 -2.39 -0.02 1.68 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.03 1.26 7.47 -2.39 -0.02 1.24 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.10 2.17 6.22 -2.38 -0.01 2.16 16 34 H 0.37 19.08 5.89 -74.05 -0.44 18.64 16 35 H 0.09 1.25 5.48 -2.39 -0.01 1.24 16 36 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 1.55 7.51 -2.38 -0.02 1.54 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.11 3.32 7.68 -2.39 -0.02 3.30 16 42 H 0.09 3.61 7.16 -2.39 -0.02 3.59 16 43 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 44 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 45 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 46 H 0.09 4.65 4.79 -2.91 -0.01 4.64 16 47 H 0.29 14.59 8.30 -92.71 -0.77 13.82 16 Total: -1.00 -72.29 359.87 3.86 -68.43 By element: Atomic # 1 Polarization: 44.17 SS G_CDS: 0.48 Total: 44.65 kcal Atomic # 6 Polarization: -41.33 SS G_CDS: 4.28 Total: -37.06 kcal Atomic # 7 Polarization: -65.80 SS G_CDS: -1.38 Total: -67.18 kcal Atomic # 8 Polarization: -53.49 SS G_CDS: -1.20 Total: -54.69 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.69 Total: 45.85 kcal Total: -72.29 3.86 -68.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305851657.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.834 kcal (2) G-P(sol) polarization free energy of solvation -72.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds