Wall clock time and date at job start Tue Mar 31 2020 12:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46871 * 2 1 4 4 O 1.42895 * 109.47204 * 240.00564 * 2 1 3 5 5 C 1.52992 * 109.47336 * 120.00035 * 2 1 3 6 6 H 1.09010 * 109.87263 * 172.20469 * 5 2 1 7 7 C 1.54327 * 109.88657 * 293.21746 * 5 2 1 8 8 C 1.55157 * 102.94272 * 141.60752 * 7 5 2 9 9 C 1.54903 * 101.58342 * 324.50232 * 8 7 5 10 10 N 1.47017 * 109.88373 * 51.03033 * 5 2 1 11 11 C 1.34773 * 125.65162 * 61.61462 * 10 5 2 12 12 O 1.21281 * 119.99803 * 358.33499 * 11 10 5 13 13 C 1.50700 * 120.00275 * 178.32997 * 11 10 5 14 14 C 1.50701 * 109.47356 * 180.02562 * 13 11 10 15 15 C 1.37635 * 120.12856 * 264.73136 * 14 13 11 16 16 C 1.38615 * 120.24678 * 179.72329 * 15 14 13 17 17 C 1.38651 * 120.50131 * 0.54769 * 16 15 14 18 18 C 1.37593 * 120.25024 * 359.72827 * 17 16 15 19 19 C 1.40704 * 120.12603 * 85.00000 * 14 13 11 20 20 C 1.41397 * 120.24505 * 359.97438 * 19 14 13 21 21 H 1.08002 * 119.99675 * 329.89439 * 20 19 14 22 22 C 1.39933 * 119.99928 * 149.89715 * 20 19 14 23 23 N 1.30824 * 120.00321 * 174.15862 * 22 20 19 24 24 Si 1.86805 * 120.00348 * 354.15580 * 22 20 19 25 25 H 1.48497 * 109.47437 * 92.93293 * 24 22 20 26 26 H 1.48503 * 109.47409 * 212.94181 * 24 22 20 27 27 H 1.48503 * 109.46764 * 332.93829 * 24 22 20 28 28 H 1.08998 * 109.47354 * 59.99600 * 1 2 3 29 29 H 1.08995 * 109.47005 * 299.99698 * 1 2 3 30 30 H 1.09007 * 109.46615 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46907 * 54.80576 * 3 2 1 32 32 H 1.08997 * 109.46878 * 174.80406 * 3 2 1 33 33 H 1.09000 * 109.47174 * 294.80248 * 3 2 1 34 34 H 0.96708 * 114.00141 * 324.82324 * 4 2 1 35 35 H 1.08997 * 110.71868 * 259.97846 * 7 5 2 36 36 H 1.09000 * 110.71244 * 23.07206 * 7 5 2 37 37 H 1.09004 * 110.99936 * 82.57777 * 8 7 5 38 38 H 1.08999 * 111.00430 * 206.38564 * 8 7 5 39 39 H 1.09000 * 110.36700 * 155.84361 * 9 8 7 40 40 H 1.08999 * 110.36573 * 278.05829 * 9 8 7 41 41 H 1.09005 * 109.47309 * 300.00324 * 13 11 10 42 42 H 1.09003 * 109.46892 * 60.00013 * 13 11 10 43 43 H 1.07998 * 119.87486 * 359.96821 * 15 14 13 44 44 H 1.08005 * 119.74931 * 180.29699 * 16 15 14 45 45 H 1.08004 * 119.87715 * 179.74815 * 17 16 15 46 46 H 1.08002 * 120.12693 * 180.02562 * 18 17 16 47 47 H 0.96993 * 120.00572 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.0400 -0.7212 1.2492 6 1 3.1212 -0.8470 1.1889 7 6 1.6757 0.0910 2.5098 8 6 1.3013 -1.0104 3.5366 9 6 0.6179 -2.0629 2.6285 10 7 1.3870 -2.0327 1.3710 11 6 1.4761 -3.0404 0.4804 12 8 2.1154 -2.8933 -0.5396 13 6 0.7814 -4.3498 0.7521 14 6 1.0370 -5.3004 -0.3890 15 6 0.1239 -5.4121 -1.4128 16 6 0.3592 -6.2814 -2.4665 17 6 1.5089 -7.0557 -2.4967 18 6 2.4328 -6.9646 -1.4812 19 6 2.2073 -6.0812 -0.4091 20 6 3.1500 -5.9787 0.6398 21 1 3.2685 -5.0452 1.1699 22 6 3.9294 -7.0866 0.9908 23 7 4.8796 -6.9623 1.8813 24 14 3.6131 -8.7433 0.1878 25 1 4.4910 -8.8932 -1.0005 26 1 3.9050 -9.8281 1.1591 27 1 2.1915 -8.8257 -0.2336 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 1.6026 1.9825 0.8398 32 1 3.1260 1.4440 0.0931 33 1 1.7546 1.9288 -0.9329 34 1 1.4567 -1.4200 -1.4420 35 1 2.5325 0.6677 2.8579 36 1 0.8258 0.7450 2.3147 37 1 2.1926 -1.4224 4.0099 38 1 0.6061 -0.6278 4.2839 39 1 0.6748 -3.0514 3.0843 40 1 -0.4213 -1.7892 2.4462 41 1 1.1665 -4.7805 1.6765 42 1 -0.2907 -4.1789 0.8500 43 1 -0.7774 -4.8172 -1.3970 44 1 -0.3605 -6.3591 -3.2681 45 1 1.6801 -7.7327 -3.3206 46 1 3.3279 -7.5684 -1.5069 47 1 5.4201 -7.7301 2.1244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305851658.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:54 Heat of formation + Delta-G solvation = -62.577510 kcal Electronic energy + Delta-G solvation = -28242.329020 eV Core-core repulsion = 24582.695735 eV Total energy + Delta-G solvation = -3659.633285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.44512 -38.31589 -37.04355 -36.34828 -33.53987 -32.35955 -31.81188 -31.06850 -30.35640 -28.27248 -27.39241 -26.77350 -24.88052 -23.46701 -21.82087 -21.51006 -20.53048 -19.37924 -18.26529 -17.30316 -17.16565 -16.63549 -15.97052 -15.62518 -15.05071 -14.87803 -14.41475 -14.18908 -13.83551 -13.77620 -13.43708 -13.25305 -12.85576 -12.60470 -12.55608 -12.23322 -12.14579 -12.11210 -12.04909 -11.82908 -11.72815 -11.42752 -11.42240 -11.18573 -11.11302 -10.91147 -10.80855 -10.63319 -10.37442 -10.17940 -9.68995 -9.59378 -9.52471 -9.11588 -9.06181 -8.18589 -7.53720 -7.48978 -6.85622 -4.45572 2.57714 2.73792 3.15164 3.21383 3.25237 3.33831 3.39190 4.01391 4.38202 4.51930 4.56375 4.70182 4.80651 4.98690 5.07638 5.10216 5.30943 5.33745 5.43554 5.53468 5.59676 5.64167 5.71679 5.73552 5.74158 5.82791 5.89254 5.93636 6.01732 6.04487 6.09152 6.14586 6.14895 6.25940 6.28713 6.30951 6.58284 6.66083 6.72188 6.96815 7.23537 7.43604 7.66730 7.74616 7.90007 7.94351 8.16175 8.21556 8.38937 8.69491 8.85179 8.87870 10.16385 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016066 B = 0.004648 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.363126 B = 6022.972673 C = 6850.846248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.120 3.880 3 C -0.140 4.140 4 O -0.550 6.550 5 C 0.117 3.883 6 H 0.078 0.922 7 C -0.128 4.128 8 C -0.133 4.133 9 C 0.100 3.900 10 N -0.622 5.622 11 C 0.529 3.471 12 O -0.503 6.503 13 C -0.069 4.069 14 C -0.165 4.165 15 C -0.070 4.070 16 C -0.239 4.239 17 C -0.081 4.081 18 C -0.228 4.228 19 C 0.108 3.892 20 C -0.436 4.436 21 H 0.089 0.911 22 C 0.080 3.920 23 N -0.818 5.818 24 Si 0.913 3.087 25 H -0.274 1.274 26 H -0.297 1.297 27 H -0.237 1.237 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.382 0.618 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.642 11.879 4.304 15.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.077 3.923 3 C -0.197 4.197 4 O -0.363 6.363 5 C 0.013 3.987 6 H 0.096 0.904 7 C -0.165 4.165 8 C -0.171 4.171 9 C -0.024 4.024 10 N -0.359 5.359 11 C 0.319 3.681 12 O -0.378 6.378 13 C -0.109 4.109 14 C -0.166 4.166 15 C -0.089 4.089 16 C -0.258 4.258 17 C -0.099 4.099 18 C -0.247 4.247 19 C 0.105 3.895 20 C -0.465 4.465 21 H 0.107 0.893 22 C -0.138 4.138 23 N -0.443 5.443 24 Si 0.742 3.258 25 H -0.200 1.200 26 H -0.226 1.226 27 H -0.160 1.160 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.238 0.762 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.117 0.883 42 H 0.094 0.906 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.111 0.889 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.615 12.231 3.895 15.459 hybrid contribution -0.270 -1.183 -0.202 1.230 sum -8.885 11.048 3.692 14.650 Atomic orbital electron populations 1.22523 0.96233 1.02532 1.02100 1.21388 0.92329 0.92298 0.86265 1.21817 1.01967 0.93951 1.02003 1.86520 1.56655 1.49530 1.43612 1.22191 0.98309 0.83377 0.94785 0.90371 1.22751 1.02135 0.97475 0.94189 1.22776 1.01337 0.95821 0.97206 1.22274 0.95043 1.00396 0.84661 1.48726 1.50947 1.13967 1.22300 1.20915 0.80583 0.84178 0.82401 1.90566 1.40370 1.80689 1.26129 1.20283 0.98911 0.91058 1.00613 1.19027 0.96443 1.03821 0.97356 1.20406 0.97331 0.97228 0.93906 1.20313 0.99919 1.04781 1.00817 1.20548 0.94412 0.97901 0.97056 1.20859 1.00275 1.06347 0.97204 1.17498 0.90697 0.89825 0.91482 1.19455 1.14123 0.98967 1.13985 0.89338 1.26167 0.92304 1.01631 0.93651 1.69626 1.14919 1.33134 1.26662 0.86369 0.81976 0.79808 0.77694 1.20050 1.22581 1.16023 0.92245 0.91768 0.92175 0.91549 0.91971 0.92033 0.76212 0.90242 0.90374 0.90384 0.90091 0.90272 0.91828 0.88260 0.90591 0.89158 0.88989 0.89011 0.88873 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 8.13 37.16 0.30 -1.76 16 2 C 0.12 1.66 0.93 -90.62 -0.08 1.57 16 3 C -0.14 -1.59 8.38 37.16 0.31 -1.28 16 4 O -0.55 -10.18 11.54 -59.24 -0.68 -10.87 16 5 C 0.12 1.66 2.59 -66.96 -0.17 1.48 16 6 H 0.08 1.34 8.14 -51.92 -0.42 0.92 16 7 C -0.13 -1.24 5.23 -24.89 -0.13 -1.37 16 8 C -0.13 -1.24 7.08 -24.59 -0.17 -1.42 16 9 C 0.10 1.13 6.71 -2.53 -0.02 1.11 16 10 N -0.62 -9.48 2.05 -163.02 -0.33 -9.82 16 11 C 0.53 10.19 6.76 -10.99 -0.07 10.12 16 12 O -0.50 -11.65 12.23 -18.45 -0.23 -11.87 16 13 C -0.07 -1.31 4.17 -29.03 -0.12 -1.43 16 14 C -0.16 -3.74 4.43 -103.91 -0.46 -4.21 16 15 C -0.07 -1.49 9.66 -39.66 -0.38 -1.87 16 16 C -0.24 -5.10 10.05 -39.29 -0.39 -5.50 16 17 C -0.08 -1.83 10.02 -39.66 -0.40 -2.23 16 18 C -0.23 -5.71 6.71 -38.87 -0.26 -5.98 16 19 C 0.11 2.78 5.24 -106.82 -0.56 2.22 16 20 C -0.44 -11.88 8.63 -37.75 -0.33 -12.20 16 21 H 0.09 2.56 6.99 -52.49 -0.37 2.19 16 22 C 0.08 2.13 5.51 -17.35 -0.10 2.03 16 23 N -0.82 -22.23 13.93 55.55 0.77 -21.46 16 24 Si 0.91 21.29 24.33 -169.99 -4.14 17.15 16 25 H -0.27 -6.32 6.84 56.52 0.39 -5.93 16 26 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.24 -5.56 6.11 56.52 0.35 -5.21 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.61 6.47 -51.93 -0.34 0.27 16 30 H 0.06 0.78 7.12 -51.93 -0.37 0.41 16 31 H 0.07 0.57 6.83 -51.93 -0.35 0.22 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.38 7.40 5.99 45.56 0.27 7.68 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.64 5.50 -51.93 -0.29 0.35 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.91 7.47 -51.93 -0.39 0.52 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.10 1.94 6.87 -51.93 -0.36 1.58 16 42 H 0.08 1.18 8.05 -51.93 -0.42 0.76 16 43 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 45 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 46 H 0.09 2.34 3.83 -52.49 -0.20 2.14 16 47 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 LS Contribution 357.12 15.07 5.38 5.38 Total: -1.00 -31.27 357.12 -8.92 -40.20 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -6.66 Total: 11.99 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -3.04 Total: -20.70 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.44 Total: -31.28 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.91 Total: -22.74 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.14 Total: 17.15 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.27 -8.92 -40.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305851658.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.379 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds