Wall clock time and date at job start Tue Mar 31 2020 12:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46871 * 2 1 4 4 O 1.42895 * 109.47204 * 240.00564 * 2 1 3 5 5 C 1.52992 * 109.47336 * 120.00035 * 2 1 3 6 6 H 1.09010 * 109.87263 * 172.20469 * 5 2 1 7 7 C 1.54327 * 109.88657 * 293.21746 * 5 2 1 8 8 C 1.55157 * 102.94272 * 141.60752 * 7 5 2 9 9 C 1.54903 * 101.58342 * 324.50232 * 8 7 5 10 10 N 1.47017 * 109.88373 * 51.03033 * 5 2 1 11 11 C 1.34773 * 125.65162 * 61.61462 * 10 5 2 12 12 O 1.21281 * 119.99803 * 358.33499 * 11 10 5 13 13 C 1.50700 * 120.00275 * 178.32997 * 11 10 5 14 14 C 1.50701 * 109.47356 * 180.02562 * 13 11 10 15 15 C 1.37635 * 120.12856 * 264.73136 * 14 13 11 16 16 C 1.38615 * 120.24678 * 179.72329 * 15 14 13 17 17 C 1.38651 * 120.50131 * 0.54769 * 16 15 14 18 18 C 1.37593 * 120.25024 * 359.72827 * 17 16 15 19 19 C 1.40704 * 120.12603 * 85.00000 * 14 13 11 20 20 C 1.41397 * 120.24505 * 359.97438 * 19 14 13 21 21 H 1.08002 * 119.99675 * 329.89439 * 20 19 14 22 22 C 1.39933 * 119.99928 * 149.89715 * 20 19 14 23 23 N 1.30824 * 120.00321 * 174.15862 * 22 20 19 24 24 Si 1.86805 * 120.00348 * 354.15580 * 22 20 19 25 25 H 1.48497 * 109.47437 * 92.93293 * 24 22 20 26 26 H 1.48503 * 109.47409 * 212.94181 * 24 22 20 27 27 H 1.48503 * 109.46764 * 332.93829 * 24 22 20 28 28 H 1.08998 * 109.47354 * 59.99600 * 1 2 3 29 29 H 1.08995 * 109.47005 * 299.99698 * 1 2 3 30 30 H 1.09007 * 109.46615 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46907 * 54.80576 * 3 2 1 32 32 H 1.08997 * 109.46878 * 174.80406 * 3 2 1 33 33 H 1.09000 * 109.47174 * 294.80248 * 3 2 1 34 34 H 0.96708 * 114.00141 * 324.82324 * 4 2 1 35 35 H 1.08997 * 110.71868 * 259.97846 * 7 5 2 36 36 H 1.09000 * 110.71244 * 23.07206 * 7 5 2 37 37 H 1.09004 * 110.99936 * 82.57777 * 8 7 5 38 38 H 1.08999 * 111.00430 * 206.38564 * 8 7 5 39 39 H 1.09000 * 110.36700 * 155.84361 * 9 8 7 40 40 H 1.08999 * 110.36573 * 278.05829 * 9 8 7 41 41 H 1.09005 * 109.47309 * 300.00324 * 13 11 10 42 42 H 1.09003 * 109.46892 * 60.00013 * 13 11 10 43 43 H 1.07998 * 119.87486 * 359.96821 * 15 14 13 44 44 H 1.08005 * 119.74931 * 180.29699 * 16 15 14 45 45 H 1.08004 * 119.87715 * 179.74815 * 17 16 15 46 46 H 1.08002 * 120.12693 * 180.02562 * 18 17 16 47 47 H 0.96993 * 120.00572 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.0400 -0.7212 1.2492 6 1 3.1212 -0.8470 1.1889 7 6 1.6757 0.0910 2.5098 8 6 1.3013 -1.0104 3.5366 9 6 0.6179 -2.0629 2.6285 10 7 1.3870 -2.0327 1.3710 11 6 1.4761 -3.0404 0.4804 12 8 2.1154 -2.8933 -0.5396 13 6 0.7814 -4.3498 0.7521 14 6 1.0370 -5.3004 -0.3890 15 6 0.1239 -5.4121 -1.4128 16 6 0.3592 -6.2814 -2.4665 17 6 1.5089 -7.0557 -2.4967 18 6 2.4328 -6.9646 -1.4812 19 6 2.2073 -6.0812 -0.4091 20 6 3.1500 -5.9787 0.6398 21 1 3.2685 -5.0452 1.1699 22 6 3.9294 -7.0866 0.9908 23 7 4.8796 -6.9623 1.8813 24 14 3.6131 -8.7433 0.1878 25 1 4.4910 -8.8932 -1.0005 26 1 3.9050 -9.8281 1.1591 27 1 2.1915 -8.8257 -0.2336 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 1.6026 1.9825 0.8398 32 1 3.1260 1.4440 0.0931 33 1 1.7546 1.9288 -0.9329 34 1 1.4567 -1.4200 -1.4420 35 1 2.5325 0.6677 2.8579 36 1 0.8258 0.7450 2.3147 37 1 2.1926 -1.4224 4.0099 38 1 0.6061 -0.6278 4.2839 39 1 0.6748 -3.0514 3.0843 40 1 -0.4213 -1.7892 2.4462 41 1 1.1665 -4.7805 1.6765 42 1 -0.2907 -4.1789 0.8500 43 1 -0.7774 -4.8172 -1.3970 44 1 -0.3605 -6.3591 -3.2681 45 1 1.6801 -7.7327 -3.3206 46 1 3.3279 -7.5684 -1.5069 47 1 5.4201 -7.7301 2.1244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305851658.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:53 Heat of formation + Delta-G solvation = -81.630833 kcal Electronic energy + Delta-G solvation = -28243.155234 eV Core-core repulsion = 24582.695735 eV Total energy + Delta-G solvation = -3660.459499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.67065 -39.93939 -38.56981 -37.51167 -35.48278 -33.75723 -33.22800 -32.28197 -32.15748 -29.36238 -28.57534 -28.03425 -26.71875 -24.64808 -23.32351 -22.76832 -21.99876 -20.77075 -19.52871 -19.24093 -18.42880 -17.92669 -17.62592 -16.89628 -16.58288 -16.04117 -16.00918 -15.73843 -15.55931 -14.91407 -14.83951 -14.51485 -14.29694 -13.97204 -13.82984 -13.78832 -13.58366 -13.19326 -13.13952 -13.03978 -12.90104 -12.86882 -12.71801 -12.60084 -12.48421 -12.41593 -12.06107 -11.92941 -11.77881 -11.52265 -11.41615 -11.35300 -10.96503 -10.86667 -10.59087 -9.43960 -9.39446 -9.27363 -8.83619 -6.48001 0.79448 0.89487 1.25297 1.38334 1.46317 1.76605 2.11069 2.14453 2.66608 3.34009 3.48256 3.63747 3.72314 3.84380 4.04224 4.09278 4.13033 4.17130 4.25485 4.34467 4.41256 4.43869 4.55101 4.57493 4.69173 4.70130 4.77146 4.84704 4.85528 4.88342 4.94749 4.96092 5.01835 5.11336 5.13469 5.15024 5.22377 5.29323 5.36217 5.38640 5.56510 5.66243 5.84609 5.92618 6.03517 6.27361 6.43713 6.61330 6.78588 6.87917 6.89314 7.44644 8.24129 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016066 B = 0.004648 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.363126 B = 6022.972673 C = 6850.846248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.107 3.893 3 C -0.136 4.136 4 O -0.580 6.580 5 C 0.110 3.890 6 H 0.031 0.969 7 C -0.116 4.116 8 C -0.126 4.126 9 C 0.088 3.912 10 N -0.618 5.618 11 C 0.524 3.476 12 O -0.554 6.554 13 C -0.065 4.065 14 C -0.166 4.166 15 C -0.077 4.077 16 C -0.223 4.223 17 C -0.093 4.093 18 C -0.251 4.251 19 C 0.080 3.920 20 C -0.461 4.461 21 H 0.051 0.949 22 C 0.039 3.961 23 N -0.864 5.864 24 Si 0.969 3.031 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.238 1.238 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.046 0.954 31 H 0.103 0.897 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.374 0.626 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.060 0.940 38 H 0.120 0.880 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.117 0.883 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.121 0.879 46 H 0.086 0.914 47 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.411 13.201 4.347 19.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.066 3.934 3 C -0.194 4.194 4 O -0.393 6.393 5 C 0.006 3.994 6 H 0.049 0.951 7 C -0.153 4.153 8 C -0.164 4.164 9 C -0.034 4.034 10 N -0.353 5.353 11 C 0.315 3.685 12 O -0.433 6.433 13 C -0.105 4.105 14 C -0.168 4.168 15 C -0.095 4.095 16 C -0.242 4.242 17 C -0.112 4.112 18 C -0.270 4.270 19 C 0.077 3.923 20 C -0.492 4.492 21 H 0.069 0.931 22 C -0.173 4.173 23 N -0.492 5.492 24 Si 0.795 3.205 25 H -0.199 1.199 26 H -0.213 1.213 27 H -0.162 1.162 28 H 0.082 0.918 29 H 0.115 0.885 30 H 0.065 0.935 31 H 0.122 0.878 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.228 0.772 35 H 0.110 0.890 36 H 0.127 0.873 37 H 0.079 0.921 38 H 0.139 0.861 39 H 0.091 0.909 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.135 0.865 43 H 0.147 0.853 44 H 0.148 0.852 45 H 0.139 0.861 46 H 0.103 0.897 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.405 13.586 3.987 18.824 hybrid contribution 0.758 -1.453 -0.314 1.669 sum -11.647 12.133 3.673 17.215 Atomic orbital electron populations 1.22433 0.93851 1.02200 1.03906 1.21774 0.94311 0.92941 0.84423 1.21852 1.01266 0.92574 1.03659 1.86496 1.57642 1.49425 1.45749 1.22332 0.95669 0.83622 0.97741 0.95106 1.22782 1.03779 0.97264 0.91496 1.22800 1.01400 0.94833 0.97357 1.22657 0.96393 1.01158 0.83152 1.48705 1.50400 1.13551 1.22614 1.20867 0.80244 0.84959 0.82460 1.90546 1.42573 1.81680 1.28478 1.20270 1.01261 0.90341 0.98593 1.19498 0.95584 1.02992 0.98730 1.20872 0.98234 0.97337 0.93092 1.20881 0.99542 1.02597 1.01165 1.20940 0.94353 0.98740 0.97121 1.21020 1.01051 1.06860 0.98110 1.17737 0.91641 0.91406 0.91477 1.19329 1.16446 0.98048 1.15353 0.93117 1.26825 0.92073 1.04330 0.94068 1.69676 1.16525 1.34256 1.28712 0.85497 0.81484 0.76520 0.76993 1.19942 1.21279 1.16173 0.91831 0.88498 0.93513 0.87810 0.93453 0.91961 0.77175 0.89031 0.87340 0.92089 0.86135 0.90931 0.88552 0.89659 0.86534 0.85327 0.85186 0.86079 0.89655 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.43 8.13 71.98 0.59 -2.85 16 2 C 0.11 2.89 0.93 -10.79 -0.01 2.88 16 3 C -0.14 -2.88 8.38 71.98 0.60 -2.27 16 4 O -0.58 -22.43 11.54 -126.02 -1.45 -23.89 16 5 C 0.11 3.11 2.59 45.34 0.12 3.23 16 6 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 7 C -0.12 -1.90 5.23 31.78 0.17 -1.73 16 8 C -0.13 -1.99 7.08 31.98 0.23 -1.77 16 9 C 0.09 1.81 6.71 86.85 0.58 2.40 16 10 N -0.62 -18.86 2.05 -788.06 -1.61 -20.47 16 11 C 0.52 20.85 6.76 87.66 0.59 21.44 16 12 O -0.55 -27.11 12.23 19.92 0.24 -26.87 16 13 C -0.07 -2.49 4.17 29.10 0.12 -2.36 16 14 C -0.17 -7.55 4.43 -19.40 -0.09 -7.64 16 15 C -0.08 -3.07 9.66 22.22 0.21 -2.86 16 16 C -0.22 -8.75 10.05 22.46 0.23 -8.52 16 17 C -0.09 -4.04 10.02 22.22 0.22 -3.82 16 18 C -0.25 -12.68 6.71 22.73 0.15 -12.53 16 19 C 0.08 4.23 5.24 -21.29 -0.11 4.11 16 20 C -0.46 -26.80 8.63 23.46 0.20 -26.59 16 21 H 0.05 3.21 6.99 -2.91 -0.02 3.19 16 22 C 0.04 2.20 5.51 85.25 0.47 2.67 16 23 N -0.86 -49.84 13.93 21.82 0.30 -49.54 16 24 Si 0.97 45.42 24.33 68.60 1.67 47.09 16 25 H -0.27 -12.55 6.84 99.48 0.68 -11.87 16 26 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 27 H -0.24 -11.06 6.11 99.48 0.61 -10.45 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 1.33 6.47 -2.39 -0.02 1.31 16 30 H 0.05 1.09 7.12 -2.38 -0.02 1.08 16 31 H 0.10 1.38 6.83 -2.39 -0.02 1.36 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.37 15.24 5.99 -74.05 -0.44 14.79 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.11 1.17 5.50 -2.39 -0.01 1.15 16 37 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.60 7.47 -2.39 -0.02 1.59 16 40 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.09 3.49 6.87 -2.38 -0.02 3.48 16 42 H 0.12 3.36 8.05 -2.39 -0.02 3.34 16 43 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 44 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 45 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 46 H 0.09 4.35 3.83 -2.91 -0.01 4.34 16 47 H 0.29 15.15 8.30 -92.71 -0.77 14.38 16 Total: -1.00 -75.59 357.12 3.83 -71.75 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: 0.41 Total: 38.14 kcal Atomic # 6 Polarization: -40.50 SS G_CDS: 4.27 Total: -36.22 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -1.31 Total: -70.01 kcal Atomic # 8 Polarization: -49.55 SS G_CDS: -1.21 Total: -50.76 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.67 Total: 47.09 kcal Total: -75.59 3.83 -71.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305851658.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.876 kcal (2) G-P(sol) polarization free energy of solvation -75.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds