Wall clock time and date at job start Tue Mar 31 2020 12:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47257 * 2 1 4 4 C 1.53008 * 109.46622 * 119.99791 * 2 1 3 5 5 H 1.08995 * 109.47839 * 300.02223 * 4 2 1 6 6 C 1.53096 * 109.47499 * 179.97438 * 4 2 1 7 7 C 1.53182 * 109.15699 * 182.39533 * 6 4 2 8 8 H 1.08999 * 109.54676 * 297.02467 * 7 6 4 9 9 N 1.46501 * 109.53883 * 176.84407 * 7 6 4 10 10 C 1.34777 * 119.99534 * 155.00221 * 9 7 6 11 11 O 1.21585 * 120.00370 * 0.02562 * 10 9 7 12 12 C 1.47650 * 119.99927 * 180.02562 * 10 9 7 13 13 C 1.40016 * 119.89517 * 179.97438 * 12 10 9 14 14 C 1.36312 * 120.10682 * 180.02562 * 13 12 10 15 15 C 1.40893 * 119.89025 * 359.97438 * 14 13 12 16 16 C 1.41110 * 120.10374 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99505 * 335.16611 * 16 15 14 18 18 C 1.40225 * 120.00293 * 155.16494 * 16 15 14 19 19 N 1.30648 * 119.99984 * 342.36750 * 18 16 15 20 20 Si 1.86797 * 120.00095 * 162.35917 * 18 16 15 21 21 H 1.48503 * 109.46804 * 94.66475 * 20 18 16 22 22 H 1.48490 * 109.47347 * 214.66567 * 20 18 16 23 23 H 1.48496 * 109.47168 * 334.67142 * 20 18 16 24 24 C 1.40889 * 119.79367 * 0.26829 * 15 14 13 25 25 C 1.36313 * 119.89071 * 359.48612 * 24 15 14 26 26 C 1.53179 * 109.03731 * 56.98481 * 7 6 4 27 27 C 1.53100 * 109.16141 * 303.01640 * 26 7 6 28 28 O 1.42898 * 109.41545 * 57.60803 * 27 26 7 29 29 H 1.08998 * 109.47326 * 300.00504 * 1 2 3 30 30 H 1.09006 * 109.46528 * 60.00200 * 1 2 3 31 31 H 1.08993 * 109.47334 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47326 * 239.99496 * 2 1 3 33 33 H 1.09009 * 109.47290 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47417 * 299.99685 * 3 2 1 35 35 H 1.08994 * 109.47538 * 59.99994 * 3 2 1 36 36 H 1.08995 * 109.52445 * 62.49735 * 6 4 2 37 37 H 1.08996 * 109.57748 * 302.32902 * 6 4 2 38 38 H 0.96998 * 120.00234 * 335.00306 * 9 7 6 39 39 H 1.08000 * 119.94442 * 359.97438 * 13 12 10 40 40 H 1.07998 * 120.05512 * 179.97438 * 14 13 12 41 41 H 0.96995 * 119.99972 * 179.97438 * 19 18 16 42 42 H 1.07995 * 120.05514 * 179.72911 * 24 15 14 43 43 H 1.08003 * 119.95081 * 180.24916 * 25 24 15 44 44 H 1.09000 * 109.52495 * 62.92162 * 26 7 6 45 45 H 1.08995 * 109.52511 * 183.11146 * 26 7 6 46 46 H 1.08996 * 109.47767 * 297.62703 * 27 26 7 47 47 H 1.09000 * 109.47980 * 177.59217 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2494 5 1 1.6762 -0.2077 2.1393 6 6 3.5708 -0.7219 1.2493 7 6 4.0733 -1.4972 2.4712 8 1 3.7524 -0.9909 3.3815 9 7 5.5362 -1.5676 2.4392 10 6 6.2282 -1.7294 3.5844 11 8 5.6384 -1.8173 4.6439 12 6 7.7027 -1.7998 3.5523 13 6 8.4194 -1.9674 4.7433 14 6 9.7808 -2.0324 4.7188 15 6 10.4665 -1.9313 3.4921 16 6 11.8757 -1.9986 3.4614 17 1 12.4483 -1.7283 4.3363 18 6 12.5325 -2.4165 2.2951 19 7 11.8735 -3.0620 1.3699 20 14 14.3495 -2.0500 2.0641 21 1 15.1509 -3.2154 2.5168 22 1 14.6232 -1.7888 0.6282 23 1 14.7190 -0.8546 2.8638 24 6 9.7412 -1.7576 2.2969 25 6 8.3797 -1.6987 2.3309 26 6 3.4913 -2.9137 2.4381 27 6 1.9634 -2.8284 2.3922 28 8 1.5642 -2.0688 1.2495 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.9356 0.3042 1.2938 37 1 3.9358 -1.1992 0.3398 38 1 6.0068 -1.4978 1.5938 39 1 7.8928 -2.0444 5.6831 40 1 10.3328 -2.1613 5.6380 41 1 12.3277 -3.3507 0.5630 42 1 10.2627 -1.6752 1.3548 43 1 7.8226 -1.5697 1.4147 44 1 3.8537 -3.4359 1.5526 45 1 3.7992 -3.4550 3.3327 46 1 1.5992 -2.3421 3.2971 47 1 1.5451 -3.8327 2.3254 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330635590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:57 Heat of formation + Delta-G solvation = -107.759773 kcal Electronic energy + Delta-G solvation = -26214.674947 eV Core-core repulsion = 22553.082413 eV Total energy + Delta-G solvation = -3661.592535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.29958 -40.23429 -38.87713 -36.47257 -36.06726 -35.67888 -33.03069 -31.55820 -31.29938 -31.05679 -28.08436 -27.71847 -25.57599 -24.66784 -23.59121 -22.80985 -21.54209 -21.43511 -20.85060 -19.37649 -18.49745 -17.54541 -17.35204 -17.16708 -16.64273 -15.93620 -15.77873 -15.64720 -15.34851 -15.26009 -15.00119 -14.77394 -14.54024 -14.40689 -14.10271 -13.90197 -13.68942 -13.44169 -13.22468 -12.97624 -12.85584 -12.70988 -12.65201 -12.43815 -12.34614 -12.24472 -12.07156 -11.79456 -11.73141 -11.57683 -11.38469 -11.22992 -11.11850 -10.87212 -10.43977 -10.06924 -9.58823 -9.41779 -8.80575 -6.49375 0.42844 1.13654 1.38061 1.41851 1.54506 2.10525 2.17399 2.30503 2.75749 2.77524 3.56481 3.66898 3.77519 3.83611 4.03798 4.05027 4.12752 4.22042 4.29132 4.34096 4.37843 4.42371 4.43923 4.61727 4.66639 4.75962 4.81597 4.85503 4.90966 4.98658 5.00285 5.02487 5.04925 5.11209 5.14723 5.18073 5.27582 5.29027 5.44977 5.49115 5.55643 5.60043 5.81153 5.93189 5.98287 6.21544 6.25667 6.52715 6.69182 6.76010 6.87698 7.42612 8.14888 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021729 B = 0.002509 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.290554 B =11155.298397 C =11800.704556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.148 4.148 4 C 0.099 3.901 5 H 0.060 0.940 6 C -0.149 4.149 7 C 0.145 3.855 8 H 0.067 0.933 9 N -0.720 5.720 10 C 0.573 3.427 11 O -0.604 6.604 12 C -0.294 4.294 13 C -0.033 4.033 14 C -0.254 4.254 15 C 0.101 3.899 16 C -0.473 4.473 17 H 0.085 0.915 18 C 0.038 3.962 19 N -0.798 5.798 20 Si 0.987 3.013 21 H -0.262 1.262 22 H -0.261 1.261 23 H -0.257 1.257 24 C -0.198 4.198 25 C -0.053 4.053 26 C -0.163 4.163 27 C 0.071 3.929 28 O -0.385 6.385 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.407 0.593 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.297 0.703 42 H 0.114 0.886 43 H 0.123 0.877 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.135 5.000 -7.532 17.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.103 4.103 3 C -0.206 4.206 4 C 0.041 3.959 5 H 0.078 0.922 6 C -0.187 4.187 7 C 0.040 3.960 8 H 0.085 0.915 9 N -0.371 5.371 10 C 0.367 3.633 11 O -0.489 6.489 12 C -0.299 4.299 13 C -0.052 4.052 14 C -0.273 4.273 15 C 0.098 3.902 16 C -0.500 4.500 17 H 0.103 0.897 18 C -0.181 4.181 19 N -0.422 5.422 20 Si 0.807 3.193 21 H -0.186 1.186 22 H -0.185 1.185 23 H -0.181 1.181 24 C -0.217 4.217 25 C -0.072 4.072 26 C -0.202 4.202 27 C -0.006 4.006 28 O -0.304 6.304 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.244 0.756 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.108 0.892 42 H 0.132 0.868 43 H 0.141 0.859 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.666 4.745 -7.197 17.882 hybrid contribution 1.363 -0.171 0.134 1.380 sum -14.304 4.574 -7.063 16.595 Atomic orbital electron populations 1.21741 0.94092 1.01948 1.02059 1.21093 0.96913 0.96072 0.96230 1.21889 1.01479 0.94372 1.02820 1.22200 0.91313 0.83103 0.99324 0.92220 1.22537 0.97172 1.01693 0.97331 1.20963 0.79465 0.96133 0.99391 0.91497 1.45837 1.06811 1.75159 1.09302 1.18403 0.87520 0.74135 0.83240 1.90606 1.72036 1.54433 1.31796 1.19188 0.91243 1.24614 0.94808 1.20509 0.93750 0.94427 0.96537 1.20860 0.93695 1.14962 0.97794 1.18145 0.94160 0.85992 0.91899 1.20113 0.92091 1.38287 0.99500 0.89674 1.26933 1.06050 0.91276 0.93885 1.69760 1.41107 1.23566 1.07718 0.85105 0.75186 0.79948 0.79076 1.18618 1.18519 1.18087 1.21007 0.93397 1.08682 0.98631 1.20714 0.94369 0.96482 0.95599 1.22570 0.97691 0.97343 1.02570 1.22547 0.92143 0.97333 0.88626 1.87895 1.74562 1.23791 1.44153 0.92717 0.91625 0.92825 0.90562 0.92139 0.90999 0.92289 0.89094 0.89862 0.75646 0.87999 0.87818 0.89157 0.86836 0.85929 0.90807 0.92407 0.92743 0.87032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.05 71.98 0.65 -1.35 16 2 C -0.08 -1.29 2.72 -10.79 -0.03 -1.32 16 3 C -0.15 -1.91 8.84 71.98 0.64 -1.27 16 4 C 0.10 1.86 2.22 30.63 0.07 1.93 16 5 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 6 C -0.15 -3.03 4.46 30.69 0.14 -2.89 16 7 C 0.15 3.93 2.54 45.11 0.11 4.05 16 8 H 0.07 2.07 7.57 -2.39 -0.02 2.06 16 9 N -0.72 -23.04 5.03 -445.00 -2.24 -25.27 16 10 C 0.57 24.00 7.74 86.73 0.67 24.67 16 11 O -0.60 -28.59 15.98 -3.99 -0.06 -28.66 16 12 C -0.29 -13.40 5.89 -19.93 -0.12 -13.52 16 13 C -0.03 -1.59 9.52 22.25 0.21 -1.38 16 14 C -0.25 -12.63 9.73 22.47 0.22 -12.41 16 15 C 0.10 5.26 5.57 -21.28 -0.12 5.14 16 16 C -0.47 -23.82 9.04 23.46 0.21 -23.61 16 17 H 0.09 4.12 7.91 -2.91 -0.02 4.09 16 18 C 0.04 1.74 5.14 85.35 0.44 2.18 16 19 N -0.80 -37.95 10.97 21.87 0.24 -37.71 16 20 Si 0.99 34.55 29.60 68.60 2.03 36.58 16 21 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 22 H -0.26 -8.59 7.11 99.48 0.71 -7.89 16 23 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 24 C -0.20 -9.73 8.63 22.47 0.19 -9.54 16 25 C -0.05 -2.30 9.47 22.25 0.21 -2.09 16 26 C -0.16 -4.19 5.72 30.69 0.18 -4.01 16 27 C 0.07 1.48 6.84 72.02 0.49 1.97 16 28 O -0.38 -8.27 9.73 -148.98 -1.45 -9.72 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.05 0.87 7.68 -2.39 -0.02 0.85 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 0.80 6.49 -2.38 -0.02 0.78 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.09 1.70 6.57 -2.39 -0.02 1.68 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.41 11.38 6.61 -92.71 -0.61 10.77 16 39 H 0.10 4.78 7.63 -2.91 -0.02 4.76 16 40 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16 41 H 0.30 12.52 8.29 -92.71 -0.77 11.75 16 42 H 0.11 5.65 6.18 -2.91 -0.02 5.63 16 43 H 0.12 4.34 6.37 -2.91 -0.02 4.33 16 44 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -60.60 374.70 3.04 -57.57 By element: Atomic # 1 Polarization: 40.33 SS G_CDS: 0.35 Total: 40.68 kcal Atomic # 6 Polarization: -37.63 SS G_CDS: 4.17 Total: -33.46 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: -2.00 Total: -62.99 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -1.51 Total: -38.38 kcal Atomic # 14 Polarization: 34.55 SS G_CDS: 2.03 Total: 36.58 kcal Total: -60.60 3.04 -57.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330635590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.192 kcal (2) G-P(sol) polarization free energy of solvation -60.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds