Wall clock time and date at job start Tue Mar 31 2020 12:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46888 * 2 1 4 4 C 1.53001 * 109.46928 * 119.99915 * 2 1 3 5 5 H 1.09007 * 109.49303 * 299.97120 * 4 2 1 6 6 C 1.53088 * 109.48033 * 179.97438 * 4 2 1 7 7 C 1.53176 * 109.16478 * 182.40734 * 6 4 2 8 8 H 1.09002 * 109.54722 * 176.84791 * 7 6 4 9 9 N 1.46496 * 109.61991 * 297.07096 * 7 6 4 10 10 C 1.34774 * 120.00353 * 204.60287 * 9 7 6 11 11 O 1.21589 * 119.99811 * 359.97438 * 10 9 7 12 12 C 1.47640 * 120.00113 * 179.97438 * 10 9 7 13 13 C 1.40018 * 119.89753 * 359.72329 * 12 10 9 14 14 C 1.36314 * 120.10626 * 179.72444 * 13 12 10 15 15 C 1.40887 * 119.89172 * 0.52461 * 14 13 12 16 16 C 1.41114 * 120.09980 * 179.72359 * 15 14 13 17 17 H 1.08003 * 119.99746 * 204.66533 * 16 15 14 18 18 C 1.40225 * 120.00171 * 24.66515 * 16 15 14 19 19 N 1.30642 * 119.99879 * 17.86878 * 18 16 15 20 20 Si 1.86797 * 119.99813 * 197.87149 * 18 16 15 21 21 H 1.48498 * 109.47490 * 89.99876 * 20 18 16 22 22 H 1.48506 * 109.47056 * 209.99852 * 20 18 16 23 23 H 1.48500 * 109.47222 * 329.99965 * 20 18 16 24 24 C 1.40883 * 119.79624 * 359.74687 * 15 14 13 25 25 C 1.36313 * 119.88976 * 0.02562 * 24 15 14 26 26 C 1.53183 * 109.03740 * 56.97745 * 7 6 4 27 27 C 1.53093 * 109.16283 * 303.02397 * 26 7 6 28 28 O 1.42898 * 109.41514 * 57.60643 * 27 26 7 29 29 H 1.09000 * 109.46984 * 299.99880 * 1 2 3 30 30 H 1.08998 * 109.46938 * 60.00206 * 1 2 3 31 31 H 1.09000 * 109.47200 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.46970 * 239.99447 * 2 1 3 33 33 H 1.09002 * 109.46604 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47163 * 299.99656 * 3 2 1 35 35 H 1.09000 * 109.47210 * 60.00258 * 3 2 1 36 36 H 1.09003 * 109.51907 * 302.31126 * 6 4 2 37 37 H 1.08996 * 109.52222 * 62.50470 * 6 4 2 38 38 H 0.97009 * 120.00104 * 24.59493 * 9 7 6 39 39 H 1.07995 * 119.94116 * 359.97438 * 13 12 10 40 40 H 1.07999 * 120.05500 * 180.29854 * 14 13 12 41 41 H 0.97003 * 120.00018 * 180.02562 * 19 18 16 42 42 H 1.07998 * 120.05867 * 180.02562 * 24 15 14 43 43 H 1.07999 * 119.94769 * 179.97438 * 25 24 15 44 44 H 1.08998 * 109.52451 * 183.11124 * 26 7 6 45 45 H 1.09003 * 109.56939 * 62.95643 * 26 7 6 46 46 H 1.09000 * 109.47583 * 297.62099 * 27 26 7 47 47 H 1.09000 * 109.47527 * 177.58981 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6773 -0.2073 2.1395 6 6 3.5709 -0.7220 1.2492 7 6 4.0735 -1.4974 2.4708 8 1 5.1620 -1.5498 2.4471 9 7 3.6421 -0.8192 3.6956 10 6 4.3335 -0.9900 4.8398 11 8 5.3150 -1.7074 4.8557 12 6 3.8991 -0.3059 6.0740 13 6 2.7719 0.5244 6.0519 14 6 2.3637 1.1535 7.1902 15 6 3.0846 0.9760 8.3876 16 6 2.6693 1.6299 9.5672 17 1 3.3833 1.8338 10.3515 18 6 1.3298 2.0149 9.7210 19 7 0.4061 1.4816 8.9666 20 14 0.8661 3.2903 11.0047 21 1 0.9272 4.6455 10.4006 22 1 -0.5125 3.0261 11.4895 23 1 1.8150 3.2132 12.1444 24 6 4.2214 0.1442 8.4036 25 6 4.6192 -0.4846 7.2614 26 6 3.4914 -2.9140 2.4376 27 6 1.9636 -2.8286 2.3917 28 8 1.5644 -2.0688 1.2492 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.9349 -1.1997 0.3395 37 1 3.9356 0.3042 1.2939 38 1 2.8589 -0.2469 3.6831 39 1 2.2226 0.6633 5.1325 40 1 1.4913 1.7900 7.1733 41 1 -0.5205 1.7482 9.0727 42 1 4.7769 0.0047 9.3192 43 1 5.4909 -1.1222 7.2725 44 1 3.7994 -3.4554 3.3321 45 1 3.8537 -3.4369 1.5525 46 1 1.5994 -2.3425 3.2969 47 1 1.5453 -3.8329 2.3247 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330635592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:03 Heat of formation + Delta-G solvation = -91.092292 kcal Electronic energy + Delta-G solvation = -26895.075195 eV Core-core repulsion = 23234.205417 eV Total energy + Delta-G solvation = -3660.869778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.29385 -38.66071 -37.11915 -35.52877 -34.71785 -33.89985 -31.53972 -30.19267 -29.80010 -29.45910 -27.29909 -26.03090 -24.67172 -23.69962 -22.26974 -21.01859 -20.46690 -20.14630 -19.08710 -17.55794 -17.00982 -16.56308 -16.06508 -15.71500 -15.39294 -14.76464 -14.48497 -14.29971 -14.05202 -13.93324 -13.51855 -13.33805 -13.20172 -12.86184 -12.78610 -12.54346 -12.37893 -12.21200 -12.03502 -11.86376 -11.68273 -11.40434 -11.31623 -11.30707 -11.21911 -10.98911 -10.95198 -10.71392 -10.63376 -10.20892 -10.06479 -9.59350 -9.43738 -9.38013 -8.99088 -8.62667 -7.75704 -7.57615 -7.06526 -4.63424 2.19955 2.89733 2.93847 2.96286 3.00444 3.65464 3.71682 3.75776 3.83460 4.46623 4.54953 4.66243 4.84387 4.93419 4.98333 5.08797 5.16517 5.18061 5.38748 5.50123 5.54064 5.54712 5.61129 5.69128 5.75651 5.79013 5.85637 5.90593 5.96638 5.98932 6.02464 6.13283 6.16390 6.21386 6.23495 6.28795 6.73843 6.79819 6.91780 7.03634 7.10315 7.21825 7.40324 7.61961 7.75719 7.82952 8.04029 8.20058 8.36804 8.60135 8.72120 9.04815 9.85505 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014376 B = 0.003327 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.264601 B = 8413.085767 C = 9616.413201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.150 4.150 4 C 0.094 3.906 5 H 0.057 0.943 6 C -0.158 4.158 7 C 0.146 3.854 8 H 0.088 0.912 9 N -0.738 5.738 10 C 0.573 3.427 11 O -0.575 6.575 12 C -0.286 4.286 13 C -0.063 4.063 14 C -0.178 4.178 15 C 0.129 3.871 16 C -0.443 4.443 17 H 0.085 0.915 18 C 0.075 3.925 19 N -0.771 5.771 20 Si 0.914 3.086 21 H -0.264 1.264 22 H -0.275 1.275 23 H -0.259 1.259 24 C -0.239 4.239 25 C -0.021 4.021 26 C -0.165 4.165 27 C 0.063 3.937 28 O -0.378 6.378 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.394 0.606 39 H 0.086 0.914 40 H 0.120 0.880 41 H 0.287 0.713 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.054 0.946 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.859 -0.623 -14.108 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 C -0.208 4.208 4 C 0.036 3.964 5 H 0.075 0.925 6 C -0.196 4.196 7 C 0.041 3.959 8 H 0.106 0.894 9 N -0.391 5.391 10 C 0.368 3.632 11 O -0.457 6.457 12 C -0.290 4.290 13 C -0.082 4.082 14 C -0.197 4.197 15 C 0.126 3.874 16 C -0.470 4.470 17 H 0.103 0.897 18 C -0.147 4.147 19 N -0.394 5.394 20 Si 0.737 3.263 21 H -0.189 1.189 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.258 4.258 25 C -0.040 4.040 26 C -0.204 4.204 27 C -0.014 4.014 28 O -0.297 6.297 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.230 0.770 39 H 0.104 0.896 40 H 0.138 0.862 41 H 0.098 0.902 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.072 0.928 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.543 -1.217 -14.288 14.422 hybrid contribution -0.563 0.817 0.812 1.282 sum -2.106 -0.401 -13.476 13.645 Atomic orbital electron populations 1.21775 0.94577 1.02416 1.01430 1.21083 0.96594 0.95606 0.97192 1.21900 1.01385 0.95185 1.02305 1.22117 0.92553 0.83567 0.98161 0.92502 1.22552 0.96713 1.01863 0.98471 1.20789 1.00059 0.91131 0.83912 0.89417 1.46055 1.32643 1.51370 1.09069 1.18594 0.81636 0.79796 0.83185 1.90628 1.28042 1.41047 1.85934 1.18902 1.04110 1.12685 0.93316 1.20443 0.94587 0.96263 0.96890 1.20971 1.02836 1.04266 0.91617 1.17783 0.89757 0.87210 0.92682 1.19871 0.94144 1.30755 1.02258 0.89677 1.26097 0.96305 0.95413 0.96846 1.69741 1.02492 1.33197 1.34016 0.86207 0.78575 0.80772 0.80725 1.18911 1.19990 1.18256 1.20719 1.03074 1.05003 0.97051 1.20357 0.96319 0.95712 0.91660 1.22555 0.96676 0.97893 1.03280 1.22536 0.94104 0.96107 0.88649 1.87877 1.74696 1.23063 1.44062 0.92732 0.92922 0.91835 0.90573 0.92145 0.92185 0.92239 0.89887 0.89992 0.76990 0.89614 0.86213 0.90206 0.88384 0.88133 0.90182 0.90724 0.92783 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.05 37.16 0.34 -1.03 16 2 C -0.09 -0.82 2.72 -90.62 -0.25 -1.07 16 3 C -0.15 -1.26 8.84 37.16 0.33 -0.94 16 4 C 0.09 1.06 2.05 -26.68 -0.05 1.00 16 5 H 0.06 0.68 6.72 -51.93 -0.35 0.33 16 6 C -0.16 -1.75 4.65 -26.59 -0.12 -1.87 16 7 C 0.15 2.04 2.81 -67.75 -0.19 1.85 16 8 H 0.09 1.35 7.59 -51.93 -0.39 0.96 16 9 N -0.74 -12.06 4.35 -54.63 -0.24 -12.30 16 10 C 0.57 11.92 7.73 -12.42 -0.10 11.82 16 11 O -0.57 -13.36 15.99 5.29 0.08 -13.28 16 12 C -0.29 -6.44 5.89 -104.73 -0.62 -7.06 16 13 C -0.06 -1.37 9.47 -39.61 -0.38 -1.75 16 14 C -0.18 -4.30 8.64 -39.27 -0.34 -4.64 16 15 C 0.13 3.25 5.58 -106.80 -0.60 2.66 16 16 C -0.44 -10.92 9.04 -37.75 -0.34 -11.26 16 17 H 0.09 2.01 7.91 -52.48 -0.42 1.59 16 18 C 0.07 1.72 5.14 -17.31 -0.09 1.64 16 19 N -0.77 -18.29 10.95 55.56 0.61 -17.68 16 20 Si 0.91 17.10 29.60 -169.99 -5.03 12.07 16 21 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 22 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 23 H -0.26 -4.82 7.11 56.52 0.40 -4.41 16 24 C -0.24 -5.74 9.73 -39.27 -0.38 -6.13 16 25 C -0.02 -0.50 9.52 -39.61 -0.38 -0.88 16 26 C -0.17 -2.18 5.80 -26.59 -0.15 -2.33 16 27 C 0.06 0.79 6.68 37.21 0.25 1.04 16 28 O -0.38 -4.78 9.73 -35.23 -0.34 -5.12 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.65 7.68 -51.93 -0.40 0.25 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.49 6.49 -51.93 -0.34 0.15 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.86 6.57 -51.93 -0.34 0.52 16 38 H 0.39 5.98 5.08 -40.82 -0.21 5.77 16 39 H 0.09 1.60 6.37 -52.49 -0.33 1.27 16 40 H 0.12 2.94 6.15 -52.49 -0.32 2.62 16 41 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16 42 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 43 H 0.10 2.28 7.63 -52.49 -0.40 1.88 16 44 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.05 0.75 7.75 -51.93 -0.40 0.35 16 47 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 370.86 15.07 5.59 5.59 Total: -1.00 -27.53 370.86 -9.66 -37.19 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -7.26 Total: 12.46 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -3.07 Total: -18.93 kcal Atomic # 7 Polarization: -30.35 SS G_CDS: 0.37 Total: -29.98 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.26 Total: -18.40 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.53 -9.66 -37.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330635592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.900 kcal (2) G-P(sol) polarization free energy of solvation -27.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds