Wall clock time and date at job start Tue Mar 31 2020 12:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47074 * 2 1 4 4 C 1.53000 * 109.47218 * 120.00442 * 2 1 3 5 5 H 1.09000 * 109.48378 * 59.97813 * 4 2 1 6 6 C 1.53087 * 109.47838 * 179.97438 * 4 2 1 7 7 C 1.53179 * 109.16432 * 177.58711 * 6 4 2 8 8 H 1.09008 * 109.53916 * 62.89036 * 7 6 4 9 9 N 1.46501 * 109.62032 * 183.10557 * 7 6 4 10 10 C 1.34773 * 120.00477 * 204.60204 * 9 7 6 11 11 O 1.21591 * 119.99581 * 0.02562 * 10 9 7 12 12 C 1.47640 * 120.00470 * 180.02562 * 10 9 7 13 13 C 1.40013 * 119.89038 * 359.72751 * 12 10 9 14 14 C 1.36323 * 120.10462 * 179.71738 * 13 12 10 15 15 C 1.40884 * 119.88791 * 0.53353 * 14 13 12 16 16 C 1.41113 * 120.10177 * 179.71809 * 15 14 13 17 17 H 1.08000 * 120.00021 * 155.07921 * 16 15 14 18 18 C 1.40223 * 120.00125 * 335.08581 * 16 15 14 19 19 N 1.30645 * 119.99819 * 342.20559 * 18 16 15 20 20 Si 1.86803 * 120.00336 * 162.20401 * 18 16 15 21 21 H 1.48500 * 109.46919 * 94.65919 * 20 18 16 22 22 H 1.48496 * 109.47169 * 214.66372 * 20 18 16 23 23 H 1.48503 * 109.46771 * 334.66474 * 20 18 16 24 24 C 1.40881 * 119.79816 * 359.74136 * 15 14 13 25 25 C 1.36318 * 119.89369 * 0.02562 * 24 15 14 26 26 C 1.53177 * 109.03969 * 303.02232 * 7 6 4 27 27 C 1.53092 * 109.21127 * 56.94616 * 26 7 6 28 28 O 1.42899 * 109.48016 * 299.93951 * 4 2 1 29 29 H 1.09000 * 109.47115 * 299.99107 * 1 2 3 30 30 H 1.08996 * 109.47376 * 59.99924 * 1 2 3 31 31 H 1.09003 * 109.47166 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46765 * 240.00502 * 2 1 3 33 33 H 1.09005 * 109.47335 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47665 * 300.00702 * 3 2 1 35 35 H 1.09010 * 109.46876 * 60.00258 * 3 2 1 36 36 H 1.09001 * 109.52458 * 57.68406 * 6 4 2 37 37 H 1.08994 * 109.57930 * 297.52749 * 6 4 2 38 38 H 0.96998 * 119.99952 * 24.60732 * 9 7 6 39 39 H 1.07997 * 119.94819 * 0.02562 * 13 12 10 40 40 H 1.07997 * 120.05609 * 180.25116 * 14 13 12 41 41 H 0.97007 * 120.00162 * 180.02562 * 19 18 16 42 42 H 1.08007 * 120.05923 * 179.97438 * 24 15 14 43 43 H 1.08000 * 119.95115 * 180.02562 * 25 24 15 44 44 H 1.08998 * 109.52290 * 176.88354 * 26 7 6 45 45 H 1.09001 * 109.52205 * 297.01164 * 26 7 6 46 46 H 1.09000 * 109.48254 * 62.40863 * 27 26 7 47 47 H 1.09004 * 109.48015 * 182.44304 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6765 -1.7489 1.2495 6 6 3.5709 -0.7220 1.2490 7 6 4.0736 -1.3922 2.5314 8 1 3.7507 -2.4331 2.5494 9 7 5.5367 -1.3322 2.5767 10 6 6.2264 -2.2390 3.2967 11 8 5.6342 -3.1072 3.9083 12 6 7.7008 -2.1783 3.3429 13 6 8.3806 -1.1810 2.6332 14 6 9.7416 -1.1174 2.6774 15 6 10.4646 -2.0640 3.4297 16 6 11.8739 -2.0059 3.4738 17 1 12.4057 -2.4270 4.3142 18 6 12.5838 -1.4012 2.4266 19 7 12.0047 -1.2066 1.2718 20 14 14.3575 -0.8739 2.6827 21 1 15.2665 -1.9505 2.2140 22 1 14.6211 0.3674 1.9114 23 1 14.5946 -0.6194 4.1264 24 6 9.7765 -3.0691 4.1375 25 6 8.4151 -3.1218 4.0912 26 6 3.4927 -0.6543 3.7416 27 6 1.9648 -0.6550 3.6462 28 8 1.5650 -0.0471 2.4161 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 3.9356 0.3044 1.2074 37 1 3.9358 -1.2735 0.3826 38 1 6.0091 -0.6398 2.0886 39 1 7.8256 -0.4581 2.0539 40 1 10.2650 -0.3453 2.1329 41 1 12.4959 -0.7887 0.5472 42 1 10.3265 -3.7972 4.7153 43 1 7.8865 -3.8917 4.6337 44 1 3.8007 -1.1582 4.6577 45 1 3.8567 0.3731 3.7509 46 1 1.5989 -1.6812 3.6788 47 1 1.5481 -0.0936 4.4825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330635596.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:11 Heat of formation + Delta-G solvation = -106.425592 kcal Electronic energy + Delta-G solvation = -26275.366192 eV Core-core repulsion = 22613.831512 eV Total energy + Delta-G solvation = -3661.534680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.30454 -40.24836 -38.88033 -36.44270 -35.91705 -35.67849 -33.01995 -31.54098 -31.29267 -31.03874 -28.02605 -27.80313 -25.72512 -24.63456 -23.63939 -22.82070 -21.62937 -21.36027 -20.61290 -19.37694 -18.49301 -17.56121 -17.23869 -17.00285 -16.54256 -15.96037 -15.89382 -15.76927 -15.33418 -15.24521 -15.00706 -14.89721 -14.51971 -14.43561 -14.00726 -13.91146 -13.66102 -13.43801 -13.20681 -12.91610 -12.84913 -12.73335 -12.65717 -12.55670 -12.37632 -12.16522 -11.85996 -11.79066 -11.67922 -11.53572 -11.38531 -11.25084 -11.12262 -10.84310 -10.41820 -10.06602 -9.58791 -9.41780 -8.80572 -6.49271 0.42875 1.13620 1.38028 1.41886 1.54440 2.10546 2.17509 2.30937 2.77247 2.81896 3.57625 3.66981 3.78213 3.83540 4.04096 4.06975 4.12650 4.25776 4.28253 4.29930 4.41730 4.42968 4.45626 4.66455 4.70727 4.74709 4.85135 4.90840 4.91848 4.97366 5.01768 5.04270 5.09809 5.11825 5.14816 5.20373 5.26482 5.28983 5.49081 5.55370 5.56862 5.60840 5.81186 5.93229 5.98268 6.21557 6.27360 6.52730 6.69383 6.76034 6.87718 7.42826 8.14840 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021979 B = 0.002543 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.645536 B =11007.489660 C =11899.618401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.145 4.145 4 C 0.099 3.901 5 H 0.060 0.940 6 C -0.151 4.151 7 C 0.145 3.855 8 H 0.065 0.935 9 N -0.720 5.720 10 C 0.573 3.427 11 O -0.605 6.605 12 C -0.294 4.294 13 C -0.053 4.053 14 C -0.198 4.198 15 C 0.101 3.899 16 C -0.473 4.473 17 H 0.085 0.915 18 C 0.038 3.962 19 N -0.797 5.797 20 Si 0.987 3.013 21 H -0.261 1.261 22 H -0.261 1.261 23 H -0.258 1.258 24 C -0.254 4.254 25 C -0.033 4.033 26 C -0.161 4.161 27 C 0.070 3.930 28 O -0.379 6.379 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.406 0.594 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.297 0.703 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.053 0.947 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.333 6.806 -4.893 17.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.104 4.104 3 C -0.202 4.202 4 C 0.041 3.959 5 H 0.078 0.922 6 C -0.189 4.189 7 C 0.040 3.960 8 H 0.083 0.917 9 N -0.371 5.371 10 C 0.367 3.633 11 O -0.489 6.489 12 C -0.299 4.299 13 C -0.072 4.072 14 C -0.217 4.217 15 C 0.098 3.902 16 C -0.500 4.500 17 H 0.103 0.897 18 C -0.181 4.181 19 N -0.421 5.421 20 Si 0.807 3.193 21 H -0.186 1.186 22 H -0.185 1.185 23 H -0.181 1.181 24 C -0.273 4.273 25 C -0.052 4.052 26 C -0.200 4.200 27 C -0.007 4.007 28 O -0.298 6.298 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.243 0.757 39 H 0.141 0.859 40 H 0.132 0.868 41 H 0.109 0.891 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.071 0.929 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.851 6.463 -4.753 17.765 hybrid contribution 1.377 -0.151 0.103 1.389 sum -14.474 6.311 -4.650 16.461 Atomic orbital electron populations 1.21741 0.94136 1.01867 1.02121 1.21184 0.96914 0.97054 0.95267 1.21816 1.00965 0.95438 1.01980 1.22154 0.91215 0.96037 0.86535 0.92240 1.22547 0.97284 1.02497 0.96559 1.20958 0.79432 0.99660 0.95904 0.91719 1.45835 1.06850 1.32735 1.51687 1.18400 0.87535 0.80038 0.77337 1.90607 1.71914 1.38656 1.47725 1.19188 0.91235 1.05805 1.13634 1.20715 0.94339 0.96020 0.96085 1.21013 0.93201 1.01491 1.06030 1.18140 0.94180 0.88983 0.88901 1.20110 0.92000 1.32450 1.05449 0.89695 1.26926 1.05686 0.92231 0.93277 1.69759 1.40913 1.28945 1.02463 0.85111 0.75327 0.78892 0.80017 1.18587 1.18511 1.18135 1.20859 0.93795 1.02303 1.10353 1.20511 0.93732 0.95929 0.95063 1.22549 0.97694 1.01302 0.98442 1.22542 0.92105 0.98722 0.87312 1.87897 1.74422 1.53996 1.13526 0.92795 0.91713 0.92706 0.88940 0.92576 0.91889 0.92864 0.89371 0.89608 0.75663 0.85924 0.86815 0.89146 0.87827 0.88010 0.92448 0.90719 0.92910 0.87034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.05 71.98 0.65 -1.32 16 2 C -0.09 -1.29 2.81 -10.80 -0.03 -1.32 16 3 C -0.14 -2.18 8.70 71.98 0.63 -1.56 16 4 C 0.10 1.82 2.38 30.62 0.07 1.89 16 5 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 6 C -0.15 -3.04 4.61 30.68 0.14 -2.90 16 7 C 0.14 3.91 2.54 45.11 0.11 4.03 16 8 H 0.06 2.02 7.59 -2.38 -0.02 2.00 16 9 N -0.72 -23.01 5.04 -445.01 -2.24 -25.25 16 10 C 0.57 24.00 7.73 86.73 0.67 24.67 16 11 O -0.60 -28.64 15.99 -4.00 -0.06 -28.70 16 12 C -0.29 -13.41 5.89 -19.93 -0.12 -13.53 16 13 C -0.05 -2.29 9.47 22.25 0.21 -2.08 16 14 C -0.20 -9.74 8.63 22.47 0.19 -9.55 16 15 C 0.10 5.26 5.57 -21.28 -0.12 5.14 16 16 C -0.47 -23.84 9.04 23.46 0.21 -23.63 16 17 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 18 C 0.04 1.75 5.13 85.35 0.44 2.19 16 19 N -0.80 -37.82 10.97 21.87 0.24 -37.58 16 20 Si 0.99 34.54 29.60 68.60 2.03 36.57 16 21 H -0.26 -8.85 7.11 99.48 0.71 -8.15 16 22 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 23 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 24 C -0.25 -12.64 9.73 22.47 0.22 -12.42 16 25 C -0.03 -1.60 9.52 22.25 0.21 -1.39 16 26 C -0.16 -4.04 5.71 30.68 0.18 -3.86 16 27 C 0.07 1.43 6.85 72.01 0.49 1.92 16 28 O -0.38 -7.82 9.06 -148.98 -1.35 -9.17 16 29 H 0.05 0.87 7.68 -2.39 -0.02 0.85 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 0.85 6.38 -2.38 -0.02 0.83 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 0.92 7.68 -2.38 -0.02 0.90 16 36 H 0.09 1.68 6.31 -2.39 -0.02 1.66 16 37 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.41 11.36 6.61 -92.71 -0.61 10.75 16 39 H 0.12 4.34 6.37 -2.91 -0.02 4.33 16 40 H 0.11 5.66 6.17 -2.91 -0.02 5.64 16 41 H 0.30 12.48 8.29 -92.70 -0.77 11.71 16 42 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16 43 H 0.10 4.78 7.63 -2.91 -0.02 4.76 16 44 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -60.45 373.44 3.14 -57.32 By element: Atomic # 1 Polarization: 40.18 SS G_CDS: 0.36 Total: 40.53 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 4.16 Total: -33.72 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: -2.00 Total: -62.83 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -1.41 Total: -37.87 kcal Atomic # 14 Polarization: 34.54 SS G_CDS: 2.03 Total: 36.57 kcal Total: -60.45 3.14 -57.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330635596.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.110 kcal (2) G-P(sol) polarization free energy of solvation -60.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds