Wall clock time and date at job start Tue Mar 31 2020 12:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47236 * 2 1 4 4 C 1.53006 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.49339 * 55.00025 * 4 3 2 6 6 C 1.53044 * 109.49753 * 294.94099 * 4 3 2 7 7 C 1.53033 * 109.53773 * 178.71296 * 6 4 3 8 8 C 1.53195 * 109.34026 * 61.31549 * 7 6 4 9 9 N 1.46927 * 108.77592 * 305.37883 * 8 7 6 10 10 S 1.65598 * 120.63426 * 233.58725 * 9 8 7 11 11 O 1.42106 * 104.27646 * 26.09201 * 10 9 8 12 12 O 1.42101 * 104.28049 * 153.94783 * 10 9 8 13 13 C 1.81395 * 104.44915 * 270.02316 * 10 9 8 14 14 C 1.52996 * 109.47433 * 179.97438 * 13 10 9 15 15 C 1.53004 * 109.47054 * 299.99724 * 14 13 10 16 16 C 1.52998 * 109.47262 * 59.99290 * 14 13 10 17 17 C 1.50703 * 109.47573 * 179.97438 * 14 13 10 18 18 H 1.07992 * 119.99631 * 0.02562 * 17 14 13 19 19 C 1.37874 * 119.99997 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00286 * 0.02562 * 19 17 14 21 21 Si 1.86794 * 119.99888 * 179.97438 * 19 17 14 22 22 H 1.48504 * 109.47231 * 90.00812 * 21 19 17 23 23 H 1.48503 * 109.47311 * 210.00263 * 21 19 17 24 24 H 1.48503 * 109.47263 * 330.00610 * 21 19 17 25 25 C 1.46928 * 118.73615 * 53.60766 * 9 8 7 26 26 H 1.08997 * 109.46920 * 299.99564 * 1 2 3 27 27 H 1.08998 * 109.47295 * 59.99857 * 1 2 3 28 28 H 1.09000 * 109.47315 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46758 * 239.99827 * 2 1 3 30 30 H 1.09003 * 109.47204 * 120.00881 * 2 1 3 31 31 H 1.09007 * 109.46945 * 60.00508 * 3 2 1 32 32 H 1.08995 * 109.47339 * 299.99806 * 3 2 1 33 33 H 1.09001 * 109.45533 * 298.70060 * 6 4 3 34 34 H 1.08999 * 109.46031 * 58.66035 * 6 4 3 35 35 H 1.08997 * 109.47506 * 301.36658 * 7 6 4 36 36 H 1.08997 * 109.49936 * 181.27863 * 7 6 4 37 37 H 1.09000 * 109.58749 * 185.59424 * 8 7 6 38 38 H 1.08998 * 109.58622 * 65.16495 * 8 7 6 39 39 H 1.09007 * 109.46930 * 299.99669 * 13 10 9 40 40 H 1.08998 * 109.47647 * 59.99771 * 13 10 9 41 41 H 1.09004 * 109.46912 * 59.99553 * 15 14 13 42 42 H 1.08996 * 109.47401 * 179.97438 * 15 14 13 43 43 H 1.08996 * 109.47335 * 300.00210 * 15 14 13 44 44 H 1.09007 * 109.46819 * 60.00480 * 16 14 13 45 45 H 1.09004 * 109.47555 * 180.02562 * 16 14 13 46 46 H 1.08998 * 109.47543 * 300.00562 * 16 14 13 47 47 H 0.97004 * 120.00458 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.58414 * 186.60362 * 25 9 8 49 49 H 1.08995 * 109.70627 * 66.24917 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9334 0.8532 -0.8426 6 6 4.0814 0.8339 1.3072 7 6 5.6114 0.8040 1.2940 8 6 6.1458 2.2355 1.1845 9 7 5.5447 2.8760 0.0067 10 16 6.4982 3.5791 -1.1503 11 8 7.7351 2.8861 -1.0536 12 8 5.7151 3.5182 -2.3345 13 6 6.6863 5.2970 -0.5991 14 6 7.5589 6.0604 -1.5975 15 6 8.9357 5.3983 -1.6819 16 6 6.8963 6.0367 -2.9763 17 6 7.7147 7.4878 -1.1399 18 1 7.2393 7.8173 -0.2280 19 6 8.4651 8.3725 -1.8849 20 7 9.0445 7.9710 -2.9952 21 14 8.6576 10.1419 -1.3181 22 1 9.8510 10.2539 -0.4415 23 1 8.8272 11.0248 -2.5001 24 1 7.4476 10.5540 -0.5621 25 6 4.0813 2.8811 -0.1248 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5140 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 3.7377 1.4374 2.1473 34 1 3.6988 -0.1816 1.4092 35 1 5.9561 0.2208 0.4401 36 1 5.9744 0.3498 2.2159 37 1 7.2301 2.2134 1.0748 38 1 5.8785 2.7949 2.0809 39 1 5.7054 5.7686 -0.5385 40 1 7.1589 5.3139 0.3830 41 1 8.8227 4.3659 -2.0131 42 1 9.5573 5.9418 -2.3935 43 1 9.4078 5.4150 -0.6997 44 1 5.9155 6.5084 -2.9162 45 1 7.5182 6.5802 -3.6877 46 1 6.7833 5.0044 -3.3075 47 1 9.5721 8.5936 -3.5196 48 1 3.8034 3.2850 -1.0983 49 1 3.6436 3.4937 0.6633 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331347593.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:03 Heat of formation + Delta-G solvation = -101.093753 kcal Electronic energy + Delta-G solvation = -26514.880153 eV Core-core repulsion = 22989.020630 eV Total energy + Delta-G solvation = -3525.859523 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.97228 -36.59937 -36.25983 -35.42500 -35.17801 -32.12155 -31.65441 -31.28853 -26.67103 -26.47880 -25.71042 -25.22906 -24.58250 -22.53275 -21.36778 -20.09597 -19.42712 -18.24694 -17.42124 -15.99209 -15.83187 -15.46870 -15.34493 -14.88301 -14.56057 -14.45941 -14.38285 -13.88048 -13.69133 -13.19505 -12.99595 -12.92742 -12.85352 -12.49979 -12.24962 -12.02931 -11.92584 -11.62286 -11.46960 -11.29159 -11.16661 -11.09666 -11.02828 -10.93074 -10.87303 -10.80049 -10.68120 -10.43128 -10.36874 -10.27685 -10.24110 -10.08673 -9.64675 -9.55596 -8.87613 -8.57467 -8.40045 -6.03183 -4.15243 0.85752 3.12630 3.25647 3.32903 3.35022 4.33919 4.41216 4.49740 4.54332 4.69306 4.78297 4.89576 4.91764 5.02788 5.18412 5.20424 5.22191 5.32506 5.45790 5.48850 5.57661 5.62658 5.65758 5.69158 5.71588 5.76415 5.78876 5.85981 5.91194 5.95602 6.01160 6.11435 6.16038 6.32531 6.35424 6.39528 6.71323 6.76005 6.80534 6.91546 7.05160 7.31897 7.50963 7.67981 7.98341 8.10094 8.33473 8.83312 9.50141 10.98108 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023478 B = 0.003360 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.336272 B = 8331.549711 C = 8653.612756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.100 4.100 5 H 0.075 0.925 6 C -0.112 4.112 7 C -0.132 4.132 8 C 0.117 3.883 9 N -1.009 6.009 10 S 2.592 3.408 11 O -0.963 6.963 12 O -0.962 6.962 13 C -0.582 4.582 14 C 0.082 3.918 15 C -0.164 4.164 16 C -0.163 4.163 17 C -0.502 4.502 18 H 0.058 0.942 19 C 0.064 3.936 20 N -0.884 5.884 21 Si 0.896 3.104 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.122 3.878 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.028 0.972 42 H 0.095 0.905 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.095 0.905 46 H 0.027 0.973 47 H 0.262 0.738 48 H 0.093 0.907 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.329 -13.677 8.952 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.120 4.120 5 H 0.094 0.906 6 C -0.150 4.150 7 C -0.171 4.171 8 C -0.009 4.009 9 N -0.844 5.844 10 S 2.692 3.308 11 O -0.953 6.953 12 O -0.953 6.953 13 C -0.716 4.716 14 C 0.080 3.920 15 C -0.221 4.221 16 C -0.221 4.221 17 C -0.541 4.541 18 H 0.077 0.923 19 C -0.138 4.138 20 N -0.522 5.522 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.004 4.004 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.046 0.954 42 H 0.113 0.887 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.113 0.887 46 H 0.046 0.954 47 H 0.073 0.927 48 H 0.112 0.888 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.872 -14.076 8.039 20.092 hybrid contribution -0.036 1.525 0.846 1.744 sum -11.907 -12.551 8.885 19.449 Atomic orbital electron populations 1.21780 0.96063 1.01383 1.01794 1.21567 0.95586 0.97021 1.02106 1.21620 0.94371 0.96959 1.02373 1.21507 0.94992 0.96783 0.98767 0.90613 1.21582 0.95291 1.00816 0.97271 1.21861 0.96017 0.96900 1.02309 1.21401 0.98727 0.93076 0.87681 1.57973 1.15898 1.71798 1.38776 1.05699 0.73332 0.77991 0.73779 1.93522 1.43714 1.72035 1.86036 1.93522 1.70136 1.87350 1.44260 1.30579 1.09756 1.20035 1.11202 1.17927 0.89924 0.94831 0.89361 1.22275 1.00118 0.97644 1.02091 1.22269 1.00313 0.99359 1.00142 1.20951 1.31552 0.93078 1.08558 0.92339 1.24941 0.95272 0.98689 0.94861 1.69803 1.32956 1.35018 1.14419 0.86536 0.78462 0.84413 0.78223 1.20650 1.21116 1.19956 1.21435 0.79292 0.96785 1.02855 0.92847 0.92727 0.93001 0.92036 0.91858 0.91777 0.91524 0.91898 0.91729 0.91458 0.91030 0.88831 0.91770 0.86527 0.86526 0.95367 0.88661 0.94510 0.94510 0.88671 0.95380 0.92744 0.88850 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.13 -0.97 5.69 -26.74 -0.15 -1.12 16 3 C -0.12 -0.99 4.69 -26.73 -0.13 -1.12 16 4 C -0.10 -1.05 2.34 -90.50 -0.21 -1.27 16 5 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 6 C -0.11 -1.03 4.96 -26.69 -0.13 -1.16 16 7 C -0.13 -1.36 6.08 -26.61 -0.16 -1.52 16 8 C 0.12 1.42 6.43 -3.71 -0.02 1.40 16 9 N -1.01 -14.56 3.22 -113.52 -0.37 -14.92 16 10 S 2.59 49.05 4.49 -107.50 -0.48 48.56 16 11 O -0.96 -20.35 14.21 -57.54 -0.82 -21.17 16 12 O -0.96 -20.32 14.21 -57.54 -0.82 -21.14 16 13 C -0.58 -11.56 5.12 37.16 0.19 -11.37 16 14 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 15 C -0.16 -4.07 7.78 37.16 0.29 -3.78 16 16 C -0.16 -4.06 7.77 37.16 0.29 -3.77 16 17 C -0.50 -13.29 8.01 -34.44 -0.28 -13.57 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.72 5.15 -17.82 -0.09 1.62 16 20 N -0.88 -24.28 9.35 55.43 0.52 -23.76 16 21 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 C 0.12 1.51 5.72 -3.71 -0.02 1.49 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.46 6.54 -51.93 -0.34 0.12 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.52 6.51 -51.93 -0.34 0.18 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 1.23 6.86 -51.93 -0.36 0.87 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 40 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 41 H 0.03 0.67 5.46 -51.93 -0.28 0.38 16 42 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 43 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 46 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 47 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 48 H 0.09 1.25 6.86 -51.93 -0.36 0.89 16 49 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 372.65 15.07 5.62 5.62 Total: -1.00 -30.84 372.65 -10.40 -41.25 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -8.89 Total: 2.81 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: -0.14 Total: -32.95 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.15 Total: -38.68 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -1.64 Total: -42.31 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 49.05 SS G_CDS: -0.48 Total: 48.56 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.84 -10.40 -41.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331347593.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.847 kcal (2) G-P(sol) polarization free energy of solvation -30.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds