Wall clock time and date at job start Tue Mar 31 2020 12:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47236 * 2 1 4 4 C 1.53006 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.49339 * 55.00025 * 4 3 2 6 6 C 1.53044 * 109.49753 * 294.94099 * 4 3 2 7 7 C 1.53033 * 109.53773 * 178.71296 * 6 4 3 8 8 C 1.53195 * 109.34026 * 61.31549 * 7 6 4 9 9 N 1.46927 * 108.77592 * 305.37883 * 8 7 6 10 10 S 1.65598 * 120.63426 * 233.58725 * 9 8 7 11 11 O 1.42106 * 104.27646 * 26.09201 * 10 9 8 12 12 O 1.42101 * 104.28049 * 153.94783 * 10 9 8 13 13 C 1.81395 * 104.44915 * 270.02316 * 10 9 8 14 14 C 1.52996 * 109.47433 * 179.97438 * 13 10 9 15 15 C 1.53004 * 109.47054 * 299.99724 * 14 13 10 16 16 C 1.52998 * 109.47262 * 59.99290 * 14 13 10 17 17 C 1.50703 * 109.47573 * 179.97438 * 14 13 10 18 18 H 1.07992 * 119.99631 * 0.02562 * 17 14 13 19 19 C 1.37874 * 119.99997 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00286 * 0.02562 * 19 17 14 21 21 Si 1.86794 * 119.99888 * 179.97438 * 19 17 14 22 22 H 1.48504 * 109.47231 * 90.00812 * 21 19 17 23 23 H 1.48503 * 109.47311 * 210.00263 * 21 19 17 24 24 H 1.48503 * 109.47263 * 330.00610 * 21 19 17 25 25 C 1.46928 * 118.73615 * 53.60766 * 9 8 7 26 26 H 1.08997 * 109.46920 * 299.99564 * 1 2 3 27 27 H 1.08998 * 109.47295 * 59.99857 * 1 2 3 28 28 H 1.09000 * 109.47315 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46758 * 239.99827 * 2 1 3 30 30 H 1.09003 * 109.47204 * 120.00881 * 2 1 3 31 31 H 1.09007 * 109.46945 * 60.00508 * 3 2 1 32 32 H 1.08995 * 109.47339 * 299.99806 * 3 2 1 33 33 H 1.09001 * 109.45533 * 298.70060 * 6 4 3 34 34 H 1.08999 * 109.46031 * 58.66035 * 6 4 3 35 35 H 1.08997 * 109.47506 * 301.36658 * 7 6 4 36 36 H 1.08997 * 109.49936 * 181.27863 * 7 6 4 37 37 H 1.09000 * 109.58749 * 185.59424 * 8 7 6 38 38 H 1.08998 * 109.58622 * 65.16495 * 8 7 6 39 39 H 1.09007 * 109.46930 * 299.99669 * 13 10 9 40 40 H 1.08998 * 109.47647 * 59.99771 * 13 10 9 41 41 H 1.09004 * 109.46912 * 59.99553 * 15 14 13 42 42 H 1.08996 * 109.47401 * 179.97438 * 15 14 13 43 43 H 1.08996 * 109.47335 * 300.00210 * 15 14 13 44 44 H 1.09007 * 109.46819 * 60.00480 * 16 14 13 45 45 H 1.09004 * 109.47555 * 180.02562 * 16 14 13 46 46 H 1.08998 * 109.47543 * 300.00562 * 16 14 13 47 47 H 0.97004 * 120.00458 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.58414 * 186.60362 * 25 9 8 49 49 H 1.08995 * 109.70627 * 66.24917 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9334 0.8532 -0.8426 6 6 4.0814 0.8339 1.3072 7 6 5.6114 0.8040 1.2940 8 6 6.1458 2.2355 1.1845 9 7 5.5447 2.8760 0.0067 10 16 6.4982 3.5791 -1.1503 11 8 7.7351 2.8861 -1.0536 12 8 5.7151 3.5182 -2.3345 13 6 6.6863 5.2970 -0.5991 14 6 7.5589 6.0604 -1.5975 15 6 8.9357 5.3983 -1.6819 16 6 6.8963 6.0367 -2.9763 17 6 7.7147 7.4878 -1.1399 18 1 7.2393 7.8173 -0.2280 19 6 8.4651 8.3725 -1.8849 20 7 9.0445 7.9710 -2.9952 21 14 8.6576 10.1419 -1.3181 22 1 9.8510 10.2539 -0.4415 23 1 8.8272 11.0248 -2.5001 24 1 7.4476 10.5540 -0.5621 25 6 4.0813 2.8811 -0.1248 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5140 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 3.7377 1.4374 2.1473 34 1 3.6988 -0.1816 1.4092 35 1 5.9561 0.2208 0.4401 36 1 5.9744 0.3498 2.2159 37 1 7.2301 2.2134 1.0748 38 1 5.8785 2.7949 2.0809 39 1 5.7054 5.7686 -0.5385 40 1 7.1589 5.3139 0.3830 41 1 8.8227 4.3659 -2.0131 42 1 9.5573 5.9418 -2.3935 43 1 9.4078 5.4150 -0.6997 44 1 5.9155 6.5084 -2.9162 45 1 7.5182 6.5802 -3.6877 46 1 6.7833 5.0044 -3.3075 47 1 9.5721 8.5936 -3.5196 48 1 3.8034 3.2850 -1.0983 49 1 3.6436 3.4937 0.6633 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331347593.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:02 Heat of formation + Delta-G solvation = -118.524161 kcal Electronic energy + Delta-G solvation = -26515.635992 eV Core-core repulsion = 22989.020630 eV Total energy + Delta-G solvation = -3526.615362 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.85354 -38.18676 -38.13800 -36.89491 -36.11321 -33.64433 -33.01205 -32.08139 -28.35941 -27.71702 -27.26760 -27.22288 -25.53682 -23.32993 -22.14282 -21.29757 -20.92637 -19.57241 -18.85096 -17.91311 -17.14128 -16.92418 -16.70227 -16.15183 -15.65632 -15.56010 -15.22435 -15.09271 -14.70784 -14.60677 -14.44657 -14.42040 -13.91936 -13.78790 -13.66678 -13.36288 -13.10122 -12.90501 -12.88224 -12.78085 -12.74458 -12.52287 -12.30419 -12.21985 -12.14747 -12.01096 -11.99095 -11.93596 -11.60292 -11.58776 -11.52261 -11.36750 -11.21828 -11.05855 -10.64636 -10.43109 -9.81019 -8.04247 -6.23378 -0.63703 1.43351 1.44895 1.53880 1.81125 2.43338 2.90839 3.17248 3.23498 3.63708 3.81660 3.93888 4.00562 4.11409 4.17155 4.20149 4.31800 4.41359 4.46754 4.54409 4.57761 4.63916 4.80455 4.82447 4.84063 4.85916 4.90355 4.93417 4.97159 4.99637 5.02708 5.06654 5.09914 5.20783 5.25112 5.33177 5.35515 5.37049 5.47498 5.48181 5.55817 5.60380 5.62836 5.74251 5.94743 6.09488 6.32460 6.81410 7.45061 8.95676 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023478 B = 0.003360 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.336272 B = 8331.549711 C = 8653.612756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.111 4.111 4 C -0.099 4.099 5 H 0.054 0.946 6 C -0.108 4.108 7 C -0.131 4.131 8 C 0.105 3.895 9 N -1.001 6.001 10 S 2.607 3.393 11 O -0.989 6.989 12 O -0.990 6.990 13 C -0.586 4.586 14 C 0.069 3.931 15 C -0.159 4.159 16 C -0.159 4.159 17 C -0.519 4.519 18 H 0.063 0.937 19 C 0.017 3.983 20 N -0.909 5.909 21 Si 0.956 3.044 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.267 1.267 25 C 0.112 3.888 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.031 0.969 42 H 0.071 0.929 43 H 0.040 0.960 44 H 0.039 0.961 45 H 0.071 0.929 46 H 0.030 0.970 47 H 0.262 0.738 48 H 0.077 0.923 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.975 -14.028 11.548 22.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.149 4.149 4 C -0.119 4.119 5 H 0.072 0.928 6 C -0.145 4.145 7 C -0.170 4.170 8 C -0.019 4.019 9 N -0.839 5.839 10 S 2.706 3.294 11 O -0.980 6.980 12 O -0.980 6.980 13 C -0.718 4.718 14 C 0.067 3.933 15 C -0.217 4.217 16 C -0.216 4.216 17 C -0.558 4.558 18 H 0.081 0.919 19 C -0.183 4.183 20 N -0.547 5.547 21 Si 0.782 3.218 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.191 1.191 25 C -0.013 4.013 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.050 0.950 42 H 0.090 0.910 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.089 0.911 46 H 0.049 0.951 47 H 0.071 0.929 48 H 0.096 0.904 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.516 -14.420 10.635 22.444 hybrid contribution 0.449 1.566 0.050 1.630 sum -13.067 -12.854 10.685 21.217 Atomic orbital electron populations 1.21772 0.95406 1.01839 1.01932 1.21558 0.96140 0.96356 1.02119 1.21594 0.92850 0.97695 1.02760 1.21498 0.96246 0.95194 0.99009 0.92764 1.21586 0.94237 1.01912 0.96765 1.21894 0.96980 0.95349 1.02827 1.21727 0.98114 0.94607 0.87471 1.57631 1.16507 1.71066 1.38735 1.04920 0.72958 0.77529 0.73950 1.93479 1.45550 1.72317 1.86618 1.93479 1.70576 1.87538 1.46408 1.30513 1.09877 1.20692 1.10705 1.17918 0.90326 0.94914 0.90109 1.22204 1.00447 0.97523 1.01552 1.22195 0.99983 0.99153 1.00317 1.21300 1.31508 0.94239 1.08708 0.91895 1.25700 0.95157 1.02412 0.94991 1.69947 1.33410 1.36082 1.15299 0.85591 0.78589 0.79951 0.77702 1.20308 1.21212 1.19093 1.21728 0.77820 0.98623 1.03113 0.92154 0.93156 0.92434 0.92976 0.90930 0.90286 0.92255 0.90164 0.90254 0.93314 0.88445 0.90160 0.88857 0.84845 0.84760 0.95038 0.91041 0.94098 0.94142 0.91051 0.95073 0.92891 0.90411 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.09 16 2 C -0.12 -1.67 5.69 30.59 0.17 -1.49 16 3 C -0.11 -1.67 4.69 30.59 0.14 -1.53 16 4 C -0.10 -1.90 2.34 -10.71 -0.03 -1.92 16 5 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 6 C -0.11 -1.62 4.96 30.62 0.15 -1.47 16 7 C -0.13 -2.37 6.08 30.67 0.19 -2.19 16 8 C 0.11 2.33 6.43 86.36 0.56 2.88 16 9 N -1.00 -27.40 3.22 -513.07 -1.65 -29.05 16 10 S 2.61 98.02 4.49 -56.49 -0.25 97.76 16 11 O -0.99 -42.08 14.21 -127.65 -1.81 -43.90 16 12 O -0.99 -42.27 14.21 -127.65 -1.81 -44.08 16 13 C -0.59 -22.69 5.12 71.98 0.37 -22.32 16 14 C 0.07 3.41 0.52 -52.93 -0.03 3.38 16 15 C -0.16 -8.08 7.78 71.98 0.56 -7.52 16 16 C -0.16 -8.04 7.77 71.98 0.56 -7.48 16 17 C -0.52 -27.29 8.01 25.60 0.21 -27.09 16 18 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 19 C 0.02 0.89 5.15 84.65 0.44 1.33 16 20 N -0.91 -50.85 9.35 21.45 0.20 -50.65 16 21 Si 0.96 42.30 29.54 68.60 2.03 44.33 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 25 C 0.11 2.56 5.72 86.36 0.49 3.05 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.07 0.84 6.54 -2.39 -0.02 0.83 16 31 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.00 6.51 -2.39 -0.02 0.98 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 2.00 6.86 -2.39 -0.02 1.99 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.13 4.64 8.14 -2.39 -0.02 4.62 16 40 H 0.13 4.65 8.14 -2.39 -0.02 4.63 16 41 H 0.03 1.53 5.46 -2.38 -0.01 1.51 16 42 H 0.07 3.94 6.07 -2.39 -0.01 3.93 16 43 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 45 H 0.07 3.94 6.07 -2.38 -0.01 3.92 16 46 H 0.03 1.51 5.46 -2.39 -0.01 1.50 16 47 H 0.26 14.00 8.31 -92.71 -0.77 13.22 16 48 H 0.08 2.03 6.86 -2.39 -0.02 2.01 16 49 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -66.75 372.65 2.09 -64.67 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.90 Total: 24.38 kcal Atomic # 6 Polarization: -67.95 SS G_CDS: 4.49 Total: -63.46 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -1.45 Total: -79.70 kcal Atomic # 8 Polarization: -84.35 SS G_CDS: -3.63 Total: -87.97 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: 98.02 SS G_CDS: -0.25 Total: 97.76 kcal Total: -66.75 2.09 -64.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331347593.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.856 kcal (2) G-P(sol) polarization free energy of solvation -66.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds