Wall clock time and date at job start Tue Mar 31 2020 12:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47339 * 2 1 4 4 C 1.52999 * 109.47197 * 120.00103 * 2 1 3 5 5 H 1.08993 * 112.78102 * 304.76493 * 4 2 1 6 6 N 1.47068 * 113.46375 * 173.98347 * 4 2 1 7 7 S 1.65603 * 136.06269 * 38.14001 * 6 4 2 8 8 O 1.42096 * 104.28019 * 162.77156 * 7 6 4 9 9 O 1.42097 * 104.27359 * 34.91465 * 7 6 4 10 10 C 1.81396 * 104.44685 * 278.84597 * 7 6 4 11 11 C 1.52994 * 109.47207 * 180.44198 * 10 7 6 12 12 C 1.52999 * 109.47355 * 300.00125 * 11 10 7 13 13 C 1.53005 * 109.47189 * 59.99873 * 11 10 7 14 14 C 1.50702 * 109.47467 * 179.97438 * 11 10 7 15 15 H 1.07998 * 119.99888 * 359.97438 * 14 11 10 16 16 C 1.37881 * 120.00070 * 180.02562 * 14 11 10 17 17 N 1.31513 * 120.00213 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99738 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.46870 * 89.99761 * 18 16 14 20 20 H 1.48497 * 109.46818 * 209.99760 * 18 16 14 21 21 H 1.48497 * 109.47056 * 329.99493 * 18 16 14 22 22 C 1.47076 * 87.88353 * 217.87616 * 6 4 2 23 23 C 1.53495 * 87.98185 * 27.34492 * 22 6 4 24 24 C 1.52998 * 114.20779 * 87.51730 * 23 22 6 25 25 C 1.52998 * 114.20654 * 220.14615 * 23 22 6 26 26 H 1.09007 * 109.46706 * 304.34356 * 1 2 3 27 27 H 1.09004 * 109.46946 * 64.34171 * 1 2 3 28 28 H 1.08998 * 109.46973 * 184.34164 * 1 2 3 29 29 H 1.09006 * 109.46992 * 240.00560 * 2 1 3 30 30 H 1.08996 * 109.47355 * 195.68145 * 3 2 1 31 31 H 1.09000 * 109.47203 * 315.67989 * 3 2 1 32 32 H 1.09003 * 109.46975 * 75.67909 * 3 2 1 33 33 H 1.09005 * 109.47421 * 60.44610 * 10 7 6 34 34 H 1.09003 * 109.47248 * 300.44114 * 10 7 6 35 35 H 1.08998 * 109.47477 * 179.97438 * 12 11 10 36 36 H 1.09005 * 109.47090 * 299.99476 * 12 11 10 37 37 H 1.09000 * 109.47114 * 60.00011 * 12 11 10 38 38 H 1.08998 * 109.46853 * 300.00617 * 13 11 10 39 39 H 1.09007 * 109.46878 * 59.99741 * 13 11 10 40 40 H 1.08998 * 109.47696 * 179.97438 * 13 11 10 41 41 H 0.96993 * 120.00146 * 180.02562 * 17 16 14 42 42 H 1.09001 * 113.46406 * 142.12214 * 22 6 4 43 43 H 1.08999 * 113.46605 * 272.50679 * 22 6 4 44 44 H 1.09005 * 109.47038 * 64.47727 * 24 23 22 45 45 H 1.08998 * 109.47532 * 184.47255 * 24 23 22 46 46 H 1.08998 * 109.47763 * 304.47962 * 24 23 22 47 47 H 1.08995 * 109.47036 * 40.49468 * 25 23 22 48 48 H 1.09001 * 109.47412 * 160.49683 * 25 23 22 49 49 H 1.08997 * 109.47182 * 280.49773 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6405 -0.3008 2.1720 6 7 3.5001 -0.8962 1.2693 7 16 4.8152 0.0034 0.8180 8 8 5.9062 -0.6076 1.4929 9 8 4.4368 1.3435 1.1007 10 6 4.9482 -0.2562 -0.9724 11 6 6.1479 0.5243 -1.5132 12 6 5.9575 2.0152 -1.2268 13 6 7.4259 0.0330 -0.8302 14 6 6.2588 0.3082 -3.0005 15 1 5.5453 -0.3231 -3.5091 16 6 7.2718 0.9156 -3.7117 17 7 8.1410 1.6840 -3.0924 18 14 7.4088 0.6482 -5.5555 19 1 6.6228 1.6885 -6.2662 20 1 8.8336 0.7387 -5.9642 21 1 6.8791 -0.6952 -5.9015 22 6 3.2787 -2.2189 1.8729 23 6 1.9149 -2.2516 1.1692 24 6 1.9560 -2.8155 -0.2525 25 6 0.7844 -2.8354 2.0188 26 1 -0.3633 0.5798 0.8486 27 1 -0.3633 0.4450 -0.9264 28 1 -0.3633 -1.0247 0.0778 29 1 1.8933 -0.5138 -0.8901 30 1 3.0940 1.4552 -0.2778 31 1 1.4680 2.0301 -0.7180 32 1 1.9215 1.8698 0.9958 33 1 4.0378 0.0939 -1.4590 34 1 5.0840 -1.3183 -1.1764 35 1 6.8123 2.5712 -1.6116 36 1 5.0470 2.3653 -1.7134 37 1 5.8776 2.1712 -0.1510 38 1 7.3459 0.1890 0.2456 39 1 7.5615 -1.0291 -1.0342 40 1 8.2806 0.5887 -1.2158 41 1 8.8534 2.1115 -3.5928 42 1 3.9706 -2.9810 1.5142 43 1 3.2066 -2.1933 2.9602 44 1 2.2507 -3.8644 -0.2190 45 1 0.9685 -2.7300 -0.7060 46 1 2.6780 -2.2541 -0.8455 47 1 0.8809 -2.4809 3.0450 48 1 -0.1762 -2.5174 1.6135 49 1 0.8430 -3.9237 2.0034 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331993933.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:46 Heat of formation + Delta-G solvation = -49.712814 kcal Electronic energy + Delta-G solvation = -27819.778322 eV Core-core repulsion = 24296.146844 eV Total energy + Delta-G solvation = -3523.631478 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.55999 -36.64332 -36.29695 -35.25533 -34.41505 -32.19043 -31.65768 -27.70405 -27.13478 -26.55981 -25.75349 -25.67378 -25.30521 -25.15380 -20.51684 -19.48137 -18.72927 -18.21883 -17.17899 -16.01504 -15.92041 -15.57115 -15.18320 -14.83025 -14.67060 -14.37848 -13.93296 -13.21549 -13.14425 -13.01866 -12.82562 -12.64054 -12.51745 -12.48153 -12.25876 -12.13172 -12.09697 -11.92910 -11.58227 -11.49311 -11.36940 -11.18948 -11.07112 -10.94497 -10.78540 -10.68924 -10.47421 -10.39556 -10.28087 -10.27173 -10.02910 -9.82503 -9.64165 -9.54321 -8.88360 -8.62855 -8.40341 -6.03508 -4.15443 0.82982 3.12412 3.25390 3.32703 3.34659 4.12037 4.33365 4.41022 4.52964 4.58352 4.72848 4.95037 5.01793 5.07484 5.21410 5.28573 5.42164 5.48831 5.51966 5.55354 5.57408 5.70520 5.71434 5.77867 5.80880 5.86202 5.88555 5.91113 5.97029 6.10042 6.13733 6.24451 6.26894 6.37947 6.44957 6.67133 6.74493 6.74942 6.79335 6.90473 7.03730 7.31413 7.49942 7.67566 7.97433 8.09256 8.32715 8.82922 9.49884 10.97871 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.004790 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.714740 B = 5844.063315 C = 6180.434113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C -0.167 4.167 4 C 0.172 3.828 5 H 0.089 0.911 6 N -1.045 6.045 7 S 2.611 3.389 8 O -0.964 6.964 9 O -0.954 6.954 10 C -0.579 4.579 11 C 0.083 3.917 12 C -0.163 4.163 13 C -0.164 4.164 14 C -0.500 4.500 15 H 0.058 0.942 16 C 0.065 3.935 17 N -0.884 5.884 18 Si 0.895 3.105 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.134 3.866 23 C -0.100 4.100 24 C -0.128 4.128 25 C -0.134 4.134 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.036 0.964 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.036 0.964 40 H 0.095 0.905 41 H 0.262 0.738 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.435 -7.744 7.702 18.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.139 4.139 3 C -0.224 4.224 4 C 0.066 3.934 5 H 0.107 0.893 6 N -0.881 5.881 7 S 2.713 3.287 8 O -0.955 6.955 9 O -0.945 6.945 10 C -0.713 4.713 11 C 0.081 3.919 12 C -0.220 4.220 13 C -0.222 4.222 14 C -0.540 4.540 15 H 0.077 0.923 16 C -0.137 4.137 17 N -0.522 5.522 18 Si 0.723 3.277 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.200 1.200 22 C 0.008 3.992 23 C -0.103 4.103 24 C -0.185 4.185 25 C -0.193 4.193 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.113 0.887 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.114 0.886 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.077 0.923 48 H 0.080 0.920 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.512 -6.968 8.244 18.086 hybrid contribution -0.009 -0.332 -1.566 1.601 sum -14.521 -7.300 6.679 17.571 Atomic orbital electron populations 1.21740 0.94205 1.01698 1.01993 1.21628 0.96781 0.97413 0.98073 1.22286 1.02908 0.94595 1.02611 1.22290 0.78799 0.94218 0.98111 0.89338 1.60400 1.19250 1.31532 1.76883 1.05140 0.71332 0.73396 0.78812 1.93515 1.51165 1.77634 1.73193 1.93541 1.81685 1.34770 1.84479 1.30627 1.09869 1.10112 1.20689 1.17925 0.86657 0.90699 0.96626 1.22271 1.03061 0.98815 0.97885 1.22282 1.02558 1.00565 0.96768 1.20926 1.12737 1.29645 0.90665 0.92329 1.24934 0.95454 0.94898 0.98412 1.69799 1.15881 1.31090 1.35411 0.86543 0.77312 0.78542 0.85295 1.20635 1.21126 1.19964 1.22494 0.95215 0.83905 0.97573 1.22474 0.95377 0.95491 0.96932 1.21574 1.02418 1.00692 0.93864 1.21691 0.97517 1.00898 0.99150 0.92602 0.92370 0.92429 0.89927 0.90714 0.92647 0.91921 0.86320 0.86539 0.88653 0.94438 0.95479 0.95471 0.94526 0.88611 0.92746 0.90574 0.90307 0.92061 0.91866 0.91667 0.92304 0.92013 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.10 37.16 0.34 -0.93 16 2 C -0.12 -1.44 2.40 -90.62 -0.22 -1.65 16 3 C -0.17 -2.45 7.81 37.16 0.29 -2.16 16 4 C 0.17 2.06 2.85 -72.25 -0.21 1.86 16 5 H 0.09 1.00 8.11 -51.93 -0.42 0.58 16 6 N -1.04 -15.64 3.71 -117.64 -0.44 -16.08 16 7 S 2.61 51.28 4.17 -107.50 -0.45 50.83 16 8 O -0.96 -21.65 15.61 -57.54 -0.90 -22.55 16 9 O -0.95 -20.30 12.26 -57.54 -0.71 -21.00 16 10 C -0.58 -11.65 4.80 37.15 0.18 -11.47 16 11 C 0.08 2.04 0.52 -155.66 -0.08 1.96 16 12 C -0.16 -4.03 7.78 37.16 0.29 -3.74 16 13 C -0.16 -4.13 7.77 37.16 0.29 -3.84 16 14 C -0.50 -13.16 8.01 -34.44 -0.28 -13.44 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.73 5.15 -17.82 -0.09 1.63 16 17 N -0.88 -24.23 9.35 55.43 0.52 -23.71 16 18 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 C 0.13 1.58 7.79 -8.50 -0.07 1.52 16 23 C -0.10 -0.97 1.13 -153.86 -0.17 -1.15 16 24 C -0.13 -1.22 7.97 37.16 0.30 -0.92 16 25 C -0.13 -0.96 9.25 37.16 0.34 -0.61 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 29 H 0.08 1.01 5.73 -51.93 -0.30 0.71 16 30 H 0.07 1.31 3.58 -51.93 -0.19 1.12 16 31 H 0.05 0.73 8.05 -51.93 -0.42 0.32 16 32 H 0.06 0.93 7.98 -51.93 -0.41 0.52 16 33 H 0.12 2.19 6.70 -51.92 -0.35 1.84 16 34 H 0.12 2.16 8.14 -51.92 -0.42 1.74 16 35 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 36 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.03 0.64 5.49 -51.93 -0.28 0.35 16 38 H 0.03 0.66 5.44 -51.93 -0.28 0.37 16 39 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.10 2.58 6.07 -51.93 -0.32 2.27 16 41 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 43 H 0.08 0.82 8.03 -51.93 -0.42 0.40 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.52 7.77 -51.93 -0.40 0.11 16 46 H 0.06 0.73 6.84 -51.93 -0.36 0.37 16 47 H 0.06 0.40 8.04 -51.93 -0.42 -0.02 16 48 H 0.06 0.39 7.20 -51.93 -0.37 0.02 16 49 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 367.10 15.07 5.53 5.53 Total: -1.00 -31.08 367.10 -9.06 -40.13 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -8.51 Total: 4.14 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 0.91 Total: -32.96 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.08 Total: -39.79 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -1.60 Total: -43.55 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 51.28 SS G_CDS: -0.45 Total: 50.83 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.08 -9.06 -40.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331993933.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.579 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds