Wall clock time and date at job start Tue Mar 31 2020 12:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47339 * 2 1 4 4 C 1.52999 * 109.47197 * 120.00103 * 2 1 3 5 5 H 1.08993 * 112.78102 * 304.76493 * 4 2 1 6 6 N 1.47068 * 113.46375 * 173.98347 * 4 2 1 7 7 S 1.65603 * 136.06269 * 38.14001 * 6 4 2 8 8 O 1.42096 * 104.28019 * 162.77156 * 7 6 4 9 9 O 1.42097 * 104.27359 * 34.91465 * 7 6 4 10 10 C 1.81396 * 104.44685 * 278.84597 * 7 6 4 11 11 C 1.52994 * 109.47207 * 180.44198 * 10 7 6 12 12 C 1.52999 * 109.47355 * 300.00125 * 11 10 7 13 13 C 1.53005 * 109.47189 * 59.99873 * 11 10 7 14 14 C 1.50702 * 109.47467 * 179.97438 * 11 10 7 15 15 H 1.07998 * 119.99888 * 359.97438 * 14 11 10 16 16 C 1.37881 * 120.00070 * 180.02562 * 14 11 10 17 17 N 1.31513 * 120.00213 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99738 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.46870 * 89.99761 * 18 16 14 20 20 H 1.48497 * 109.46818 * 209.99760 * 18 16 14 21 21 H 1.48497 * 109.47056 * 329.99493 * 18 16 14 22 22 C 1.47076 * 87.88353 * 217.87616 * 6 4 2 23 23 C 1.53495 * 87.98185 * 27.34492 * 22 6 4 24 24 C 1.52998 * 114.20779 * 87.51730 * 23 22 6 25 25 C 1.52998 * 114.20654 * 220.14615 * 23 22 6 26 26 H 1.09007 * 109.46706 * 304.34356 * 1 2 3 27 27 H 1.09004 * 109.46946 * 64.34171 * 1 2 3 28 28 H 1.08998 * 109.46973 * 184.34164 * 1 2 3 29 29 H 1.09006 * 109.46992 * 240.00560 * 2 1 3 30 30 H 1.08996 * 109.47355 * 195.68145 * 3 2 1 31 31 H 1.09000 * 109.47203 * 315.67989 * 3 2 1 32 32 H 1.09003 * 109.46975 * 75.67909 * 3 2 1 33 33 H 1.09005 * 109.47421 * 60.44610 * 10 7 6 34 34 H 1.09003 * 109.47248 * 300.44114 * 10 7 6 35 35 H 1.08998 * 109.47477 * 179.97438 * 12 11 10 36 36 H 1.09005 * 109.47090 * 299.99476 * 12 11 10 37 37 H 1.09000 * 109.47114 * 60.00011 * 12 11 10 38 38 H 1.08998 * 109.46853 * 300.00617 * 13 11 10 39 39 H 1.09007 * 109.46878 * 59.99741 * 13 11 10 40 40 H 1.08998 * 109.47696 * 179.97438 * 13 11 10 41 41 H 0.96993 * 120.00146 * 180.02562 * 17 16 14 42 42 H 1.09001 * 113.46406 * 142.12214 * 22 6 4 43 43 H 1.08999 * 113.46605 * 272.50679 * 22 6 4 44 44 H 1.09005 * 109.47038 * 64.47727 * 24 23 22 45 45 H 1.08998 * 109.47532 * 184.47255 * 24 23 22 46 46 H 1.08998 * 109.47763 * 304.47962 * 24 23 22 47 47 H 1.08995 * 109.47036 * 40.49468 * 25 23 22 48 48 H 1.09001 * 109.47412 * 160.49683 * 25 23 22 49 49 H 1.08997 * 109.47182 * 280.49773 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6405 -0.3008 2.1720 6 7 3.5001 -0.8962 1.2693 7 16 4.8152 0.0034 0.8180 8 8 5.9062 -0.6076 1.4929 9 8 4.4368 1.3435 1.1007 10 6 4.9482 -0.2562 -0.9724 11 6 6.1479 0.5243 -1.5132 12 6 5.9575 2.0152 -1.2268 13 6 7.4259 0.0330 -0.8302 14 6 6.2588 0.3082 -3.0005 15 1 5.5453 -0.3231 -3.5091 16 6 7.2718 0.9156 -3.7117 17 7 8.1410 1.6840 -3.0924 18 14 7.4088 0.6482 -5.5555 19 1 6.6228 1.6885 -6.2662 20 1 8.8336 0.7387 -5.9642 21 1 6.8791 -0.6952 -5.9015 22 6 3.2787 -2.2189 1.8729 23 6 1.9149 -2.2516 1.1692 24 6 1.9560 -2.8155 -0.2525 25 6 0.7844 -2.8354 2.0188 26 1 -0.3633 0.5798 0.8486 27 1 -0.3633 0.4450 -0.9264 28 1 -0.3633 -1.0247 0.0778 29 1 1.8933 -0.5138 -0.8901 30 1 3.0940 1.4552 -0.2778 31 1 1.4680 2.0301 -0.7180 32 1 1.9215 1.8698 0.9958 33 1 4.0378 0.0939 -1.4590 34 1 5.0840 -1.3183 -1.1764 35 1 6.8123 2.5712 -1.6116 36 1 5.0470 2.3653 -1.7134 37 1 5.8776 2.1712 -0.1510 38 1 7.3459 0.1890 0.2456 39 1 7.5615 -1.0291 -1.0342 40 1 8.2806 0.5887 -1.2158 41 1 8.8534 2.1115 -3.5928 42 1 3.9706 -2.9810 1.5142 43 1 3.2066 -2.1933 2.9602 44 1 2.2507 -3.8644 -0.2190 45 1 0.9685 -2.7300 -0.7060 46 1 2.6780 -2.2541 -0.8455 47 1 0.8809 -2.4809 3.0450 48 1 -0.1762 -2.5174 1.6135 49 1 0.8430 -3.9237 2.0034 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331993933.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:46 Heat of formation + Delta-G solvation = -68.430411 kcal Electronic energy + Delta-G solvation = -27820.589978 eV Core-core repulsion = 24296.146844 eV Total energy + Delta-G solvation = -3524.443134 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.48500 -38.27265 -38.16833 -36.91232 -35.38232 -33.66464 -33.05080 -28.73647 -28.19199 -27.83579 -27.64882 -27.27174 -26.64571 -26.29202 -21.50280 -21.28745 -19.96678 -19.27286 -18.60037 -17.90719 -17.32594 -17.02730 -16.73877 -16.05872 -15.77349 -15.59943 -15.05998 -14.80485 -14.71705 -14.47860 -14.04174 -13.92050 -13.76973 -13.69558 -13.49787 -13.15032 -13.03180 -12.98675 -12.91819 -12.86419 -12.80018 -12.77250 -12.55983 -12.34077 -12.22332 -12.18403 -12.07488 -12.01140 -11.71133 -11.64218 -11.46984 -11.39728 -11.24519 -10.69738 -10.61620 -10.44248 -9.92584 -8.05262 -6.24190 -0.68941 1.42672 1.44121 1.53114 1.78628 2.42502 2.86844 3.09440 3.17666 3.35805 3.62882 3.82564 3.98852 4.01298 4.08447 4.22852 4.31687 4.45294 4.52790 4.55921 4.65283 4.76292 4.78346 4.81468 4.83802 4.90308 4.91700 4.95295 4.97357 5.03105 5.04002 5.12782 5.15531 5.19674 5.23771 5.29176 5.32171 5.34959 5.45816 5.54061 5.59767 5.61199 5.63107 5.79557 5.91365 6.06686 6.30456 6.79923 7.44103 8.94967 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.004790 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.714740 B = 5844.063315 C = 6180.434113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.120 4.120 3 C -0.171 4.171 4 C 0.164 3.836 5 H 0.099 0.901 6 N -1.050 6.050 7 S 2.626 3.374 8 O -0.999 6.999 9 O -0.978 6.978 10 C -0.578 4.578 11 C 0.072 3.928 12 C -0.155 4.155 13 C -0.159 4.159 14 C -0.516 4.516 15 H 0.063 0.937 16 C 0.018 3.982 17 N -0.909 5.909 18 Si 0.955 3.045 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.267 1.267 22 C 0.120 3.880 23 C -0.078 4.078 24 C -0.134 4.134 25 C -0.131 4.131 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.028 0.972 38 H 0.027 0.973 39 H 0.038 0.962 40 H 0.073 0.927 41 H 0.262 0.738 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.043 0.957 47 H 0.064 0.936 48 H 0.076 0.924 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.252 -9.653 7.580 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.139 4.139 3 C -0.228 4.228 4 C 0.059 3.941 5 H 0.116 0.884 6 N -0.890 5.890 7 S 2.728 3.272 8 O -0.990 6.990 9 O -0.968 6.968 10 C -0.710 4.710 11 C 0.070 3.930 12 C -0.213 4.213 13 C -0.217 4.217 14 C -0.555 4.555 15 H 0.081 0.919 16 C -0.181 4.181 17 N -0.547 5.547 18 Si 0.781 3.219 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.191 1.191 22 C -0.004 4.004 23 C -0.080 4.080 24 C -0.191 4.191 25 C -0.189 4.189 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.057 0.943 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.092 0.908 45 H 0.099 0.901 46 H 0.063 0.937 47 H 0.083 0.917 48 H 0.094 0.906 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.325 -8.876 8.116 21.091 hybrid contribution 0.818 0.254 -1.463 1.695 sum -16.508 -8.622 6.653 19.776 Atomic orbital electron populations 1.21717 0.91603 1.03279 1.02509 1.21656 0.98922 0.95271 0.98030 1.22292 1.01261 0.96986 1.02282 1.22659 0.76527 0.96318 0.98593 0.88360 1.60066 1.19548 1.32607 1.76759 1.04251 0.71639 0.73088 0.78217 1.93459 1.53662 1.78212 1.73650 1.93510 1.82162 1.36605 1.84544 1.30511 1.08515 1.10205 1.21812 1.17903 0.87987 0.90823 0.96252 1.22168 1.02026 0.99261 0.97868 1.22211 1.02435 1.00292 0.96786 1.21246 1.12839 1.29629 0.91767 0.91927 1.25686 0.95259 0.94739 1.02424 1.69941 1.16268 1.31737 1.36790 0.85596 0.77102 0.78716 0.80473 1.20255 1.21185 1.19105 1.22918 0.96679 0.82122 0.98729 1.22385 0.94923 0.93399 0.97318 1.21655 1.02940 1.01075 0.93425 1.21698 0.96678 1.01610 0.98878 0.91968 0.92074 0.90286 0.90176 0.93723 0.91774 0.92689 0.84929 0.85253 0.91007 0.94116 0.95275 0.95407 0.94274 0.90826 0.92873 0.90459 0.88773 0.90836 0.90060 0.93748 0.91722 0.90557 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.10 71.98 0.66 -1.35 16 2 C -0.12 -2.63 2.40 -10.79 -0.03 -2.66 16 3 C -0.17 -4.94 7.81 71.98 0.56 -4.38 16 4 C 0.16 3.56 2.85 41.88 0.12 3.68 16 5 H 0.10 1.96 8.11 -2.39 -0.02 1.94 16 6 N -1.05 -30.33 3.71 -526.10 -1.95 -32.28 16 7 S 2.63 104.07 4.17 -56.49 -0.24 103.83 16 8 O -1.00 -45.60 15.61 -127.65 -1.99 -47.59 16 9 O -0.98 -42.49 12.26 -127.65 -1.57 -44.05 16 10 C -0.58 -23.32 4.80 71.98 0.35 -22.97 16 11 C 0.07 3.61 0.52 -52.93 -0.03 3.58 16 12 C -0.16 -7.95 7.78 71.98 0.56 -7.39 16 13 C -0.16 -8.27 7.77 71.98 0.56 -7.71 16 14 C -0.52 -27.28 8.01 25.60 0.21 -27.07 16 15 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 16 C 0.02 0.98 5.15 84.66 0.44 1.42 16 17 N -0.91 -51.00 9.35 21.45 0.20 -50.80 16 18 Si 0.96 42.42 29.54 68.60 2.03 44.45 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 22 C 0.12 2.59 7.79 83.18 0.65 3.24 16 23 C -0.08 -1.25 1.13 -51.76 -0.06 -1.31 16 24 C -0.13 -2.12 7.97 71.98 0.57 -1.55 16 25 C -0.13 -1.28 9.25 71.98 0.67 -0.61 16 26 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.08 0.86 6.57 -2.39 -0.02 0.84 16 29 H 0.08 1.81 5.73 -2.38 -0.01 1.80 16 30 H 0.04 1.57 3.58 -2.39 -0.01 1.56 16 31 H 0.06 1.66 8.05 -2.39 -0.02 1.65 16 32 H 0.05 1.62 7.98 -2.39 -0.02 1.60 16 33 H 0.13 4.89 6.70 -2.39 -0.02 4.87 16 34 H 0.13 4.78 8.14 -2.39 -0.02 4.76 16 35 H 0.07 3.99 6.07 -2.39 -0.01 3.98 16 36 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.03 1.43 5.49 -2.39 -0.01 1.42 16 38 H 0.03 1.39 5.44 -2.39 -0.01 1.38 16 39 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.07 4.12 6.07 -2.39 -0.01 4.10 16 41 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 42 H 0.08 1.64 8.12 -2.39 -0.02 1.62 16 43 H 0.09 1.73 8.03 -2.39 -0.02 1.71 16 44 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 45 H 0.08 1.00 7.77 -2.39 -0.02 0.98 16 46 H 0.04 0.90 6.84 -2.39 -0.02 0.88 16 47 H 0.06 0.59 8.04 -2.39 -0.02 0.57 16 48 H 0.08 0.58 7.20 -2.39 -0.02 0.56 16 49 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -68.33 367.10 2.62 -65.71 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.92 Total: 25.81 kcal Atomic # 6 Polarization: -70.29 SS G_CDS: 5.22 Total: -65.08 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -1.75 Total: -83.08 kcal Atomic # 8 Polarization: -88.09 SS G_CDS: -3.56 Total: -91.65 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 104.07 SS G_CDS: -0.24 Total: 103.83 kcal Total: -68.33 2.62 -65.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331993933.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.716 kcal (2) G-P(sol) polarization free energy of solvation -68.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds