Wall clock time and date at job start Tue Mar 31 2020 11:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47385 * 2 1 4 4 C 1.53005 * 109.47072 * 239.99555 * 2 1 3 5 5 C 1.50699 * 109.46933 * 60.00056 * 4 2 1 6 6 H 1.08000 * 119.99819 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99997 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99749 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99830 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.46928 * 90.00018 * 9 7 5 11 11 H 1.48500 * 109.46885 * 210.00171 * 9 7 5 12 12 H 1.48501 * 109.47019 * 329.99670 * 9 7 5 13 13 C 1.53006 * 109.46881 * 120.00047 * 2 1 3 14 14 N 1.46901 * 109.46808 * 293.89930 * 13 2 1 15 15 C 1.47937 * 111.00101 * 212.08784 * 14 13 2 16 16 C 1.53912 * 113.33476 * 192.19344 * 15 14 13 17 17 C 1.50541 * 112.94240 * 317.75186 * 16 15 14 18 18 C 1.54523 * 108.85904 * 91.74749 * 17 16 15 19 19 H 1.08998 * 109.03869 * 43.34099 * 18 17 16 20 20 S 1.81400 * 109.03514 * 162.28299 * 18 17 16 21 21 C 1.81400 * 101.92287 * 305.00011 * 20 18 17 22 22 O 1.42095 * 108.58208 * 59.48718 * 20 18 17 23 23 O 1.42100 * 108.57817 * 190.51356 * 20 18 17 24 24 C 1.45872 * 111.67417 * 282.77337 * 18 17 16 25 25 C 1.44306 * 110.99351 * 84.68615 * 14 13 2 26 26 H 1.08997 * 109.46854 * 304.79688 * 1 2 3 27 27 H 1.09000 * 109.46660 * 64.80209 * 1 2 3 28 28 H 1.09001 * 109.47176 * 184.79741 * 1 2 3 29 29 H 1.09000 * 109.47434 * 175.39174 * 3 2 1 30 30 H 1.09007 * 109.46600 * 295.38771 * 3 2 1 31 31 H 1.08996 * 109.47154 * 55.38308 * 3 2 1 32 32 H 1.09001 * 109.47103 * 180.02562 * 4 2 1 33 33 H 1.08997 * 109.47422 * 300.00050 * 4 2 1 34 34 H 0.97001 * 119.99662 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.46795 * 173.90467 * 13 2 1 36 36 H 1.08996 * 109.47195 * 53.90444 * 13 2 1 37 37 H 1.09004 * 108.71177 * 313.18719 * 15 14 13 38 38 H 1.08996 * 108.70936 * 71.32173 * 15 14 13 39 39 H 1.09006 * 108.78835 * 196.86043 * 16 15 14 40 40 H 1.09000 * 108.79032 * 78.64249 * 16 15 14 41 41 H 1.08996 * 109.57163 * 331.93632 * 17 16 15 42 42 H 1.08997 * 109.56998 * 211.56471 * 17 16 15 43 43 H 1.08994 * 109.47393 * 60.00147 * 21 20 18 44 44 H 1.09000 * 109.47013 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.47036 * 299.99800 * 21 20 18 46 46 H 1.08997 * 108.84485 * 182.32410 * 24 18 17 47 47 H 1.09007 * 108.84208 * 300.78212 * 24 18 17 48 48 H 1.08996 * 109.70059 * 101.64355 * 25 14 13 49 49 H 1.08996 * 109.73164 * 341.06815 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9172 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7320 8 7 1.4332 0.1384 -4.8057 9 14 2.9451 -2.0007 -3.9033 10 1 2.0865 -3.2113 -3.9492 11 1 3.7375 -1.9078 -5.1558 12 1 3.8651 -2.0900 -2.7410 13 6 2.0400 -0.7213 1.2493 14 7 1.6742 0.0510 2.4442 15 6 2.6912 -0.1036 3.5073 16 6 2.2293 0.4300 4.8751 17 6 1.4991 1.7428 4.7767 18 6 -0.0145 1.4635 4.6398 19 1 -0.2960 0.6782 5.3412 20 16 -0.9337 2.9744 5.0434 21 6 -0.2984 3.3694 6.6959 22 8 -0.5330 4.0014 4.1469 23 8 -2.3126 2.6493 5.1543 24 6 -0.3644 1.0420 3.2879 25 6 0.3340 -0.2667 2.8748 26 1 -0.3633 0.5865 0.8439 27 1 -0.3633 0.4375 -0.9299 28 1 -0.3633 -1.0241 0.0859 29 1 3.1270 1.4436 0.0826 30 1 1.7458 1.9318 -0.9285 31 1 1.6109 1.9796 0.8457 32 1 3.1301 -0.7218 -1.2490 33 1 1.6767 -1.7490 -1.2492 34 1 1.6675 -0.1931 -5.6867 35 1 3.1246 -0.8168 1.1964 36 1 1.5903 -1.7126 1.3055 37 1 2.9334 -1.1616 3.6084 38 1 3.5918 0.4337 3.2104 39 1 3.1027 0.5611 5.5140 40 1 1.5686 -0.3056 5.3340 41 1 1.8498 2.2910 3.9023 42 1 1.6822 2.3307 5.6761 43 1 0.7790 3.5256 6.6433 44 1 -0.7798 4.2758 7.0631 45 1 -0.5132 2.5440 7.3747 46 1 -1.4434 0.8981 3.2322 47 1 -0.0780 1.8279 2.5889 48 1 0.3729 -0.9466 3.7257 49 1 -0.2145 -0.7333 2.0566 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337393760.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:50 Heat of formation + Delta-G solvation = -71.931255 kcal Electronic energy + Delta-G solvation = -26702.794302 eV Core-core repulsion = 23178.199360 eV Total energy + Delta-G solvation = -3524.594942 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.67876 -37.19594 -36.83502 -36.18824 -34.10689 -32.71371 -31.99361 -29.99486 -27.84198 -27.46125 -26.37190 -25.37907 -24.35789 -22.13930 -21.21460 -19.86699 -19.02827 -17.93985 -17.41824 -16.72738 -16.38991 -16.23659 -15.66042 -15.27397 -14.78348 -14.38938 -14.19943 -13.89974 -13.63863 -13.56493 -13.42861 -13.05422 -12.99582 -12.69657 -12.49597 -12.27709 -12.22363 -12.15693 -12.11533 -11.65287 -11.47825 -11.27167 -11.10135 -11.01025 -10.91899 -10.83424 -10.75022 -10.55813 -10.43948 -10.26744 -10.14817 -9.74693 -9.60722 -9.16677 -8.87927 -8.46351 -7.94166 -5.96333 -3.92067 -0.24624 2.49226 3.33518 3.41358 3.42567 3.44343 3.68439 3.98647 4.11194 4.34104 4.44054 4.50839 4.67258 4.68363 4.83479 5.01245 5.12728 5.21656 5.24643 5.34907 5.37294 5.49085 5.55679 5.58643 5.65581 5.69793 5.79316 5.85474 5.95157 5.96899 6.04983 6.15235 6.19781 6.29614 6.52441 6.70613 6.74687 6.87957 7.14915 7.21689 7.26030 7.38399 7.39676 7.44444 7.56910 7.89663 8.64354 9.10626 9.66785 11.16866 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023472 B = 0.003326 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.601766 B = 8416.604536 C = 9034.137722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 C -0.116 4.116 4 C -0.004 4.004 5 C -0.505 4.505 6 H 0.079 0.921 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.068 3.932 14 N -0.541 5.541 15 C 0.061 3.939 16 C -0.112 4.112 17 C -0.100 4.100 18 C -0.548 4.548 19 H 0.129 0.871 20 S 2.412 3.588 21 C -0.661 4.661 22 O -0.930 6.930 23 O -0.944 6.944 24 C -0.116 4.116 25 C 0.068 3.932 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.013 0.987 33 H 0.006 0.994 34 H 0.261 0.739 35 H 0.063 0.937 36 H 0.033 0.967 37 H 0.029 0.971 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.100 0.900 42 H 0.068 0.932 43 H 0.131 0.869 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.073 0.927 47 H 0.095 0.905 48 H 0.037 0.963 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.081 1.501 26.499 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.044 4.044 3 C -0.173 4.173 4 C -0.042 4.042 5 C -0.543 4.543 6 H 0.097 0.903 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.059 4.059 14 N -0.265 5.265 15 C -0.066 4.066 16 C -0.151 4.151 17 C -0.139 4.139 18 C -0.658 4.658 19 H 0.147 0.853 20 S 2.595 3.405 21 C -0.810 4.810 22 O -0.928 6.928 23 O -0.941 6.941 24 C -0.155 4.155 25 C -0.062 4.062 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.031 0.969 33 H 0.024 0.976 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.119 0.881 42 H 0.086 0.914 43 H 0.149 0.851 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.091 0.909 47 H 0.114 0.886 48 H 0.056 0.944 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.565 2.447 25.725 25.848 hybrid contribution 1.179 -2.238 0.563 2.591 sum 0.614 0.209 26.288 26.296 Atomic orbital electron populations 1.22020 0.95741 0.99770 1.01932 1.20378 0.95158 0.96165 0.92687 1.21590 0.99092 0.95548 1.01081 1.19627 0.95873 0.95216 0.93511 1.21150 1.31333 1.13164 0.88644 0.90324 1.25021 0.95837 0.96715 0.96060 1.69912 1.46220 1.40606 0.97804 0.86852 0.81300 0.84063 0.77433 1.20585 1.21623 1.19211 1.22365 0.99844 0.94004 0.89718 1.60627 1.01179 1.59068 1.05642 1.22405 0.95324 0.98540 0.90367 1.21297 1.00255 0.96517 0.97001 1.21315 0.89809 0.99169 1.03563 1.29075 1.09127 1.19906 1.07704 0.85278 1.08318 0.76460 0.77988 0.77720 1.30351 1.13819 1.12117 1.24702 1.93613 1.83805 1.54480 1.60856 1.93591 1.29429 1.84596 1.86471 1.20366 1.00537 1.01623 0.92977 1.21910 0.90118 0.94298 0.99853 0.93405 0.91305 0.94519 0.94665 0.92108 0.93416 0.96893 0.97560 0.92938 0.91828 0.94889 0.95244 0.90916 0.91108 0.92142 0.88149 0.91371 0.85084 0.85479 0.85529 0.90889 0.88619 0.94449 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 6.80 37.16 0.25 -2.27 16 2 C -0.04 -0.82 0.61 -154.50 -0.09 -0.91 16 3 C -0.12 -2.21 7.99 37.16 0.30 -1.91 16 4 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 5 C -0.50 -13.93 8.08 -34.44 -0.28 -14.21 16 6 H 0.08 2.33 5.95 -52.49 -0.31 2.02 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.91 -27.91 13.96 55.43 0.77 -27.14 16 9 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 13 C 0.07 1.04 4.13 -3.82 -0.02 1.03 16 14 N -0.54 -6.82 2.93 -234.64 -0.69 -7.51 16 15 C 0.06 0.62 5.21 -2.78 -0.01 0.60 16 16 C -0.11 -0.82 5.27 -27.48 -0.14 -0.96 16 17 C -0.10 -0.73 4.92 -27.16 -0.13 -0.86 16 18 C -0.55 -4.28 2.17 -29.31 -0.06 -4.35 16 19 H 0.13 0.68 7.59 -51.91 -0.39 0.28 16 20 S 2.41 21.23 4.80 -107.50 -0.52 20.71 16 21 C -0.66 -3.02 10.07 101.05 1.02 -2.00 16 22 O -0.93 -12.05 18.02 -57.83 -1.04 -13.09 16 23 O -0.94 -11.70 18.10 -57.83 -1.05 -12.75 16 24 C -0.12 -1.25 3.73 -29.59 -0.11 -1.36 16 25 C 0.07 0.79 4.23 -4.70 -0.02 0.77 16 26 H 0.05 0.76 4.97 -51.93 -0.26 0.50 16 27 H 0.07 1.46 6.48 -51.93 -0.34 1.13 16 28 H 0.04 0.64 7.68 -51.93 -0.40 0.24 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 1.32 6.48 -51.92 -0.34 0.99 16 31 H 0.05 0.83 7.61 -51.93 -0.40 0.43 16 32 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 33 H 0.01 0.14 7.57 -51.93 -0.39 -0.25 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.06 0.98 7.76 -51.93 -0.40 0.58 16 36 H 0.03 0.50 7.74 -51.93 -0.40 0.10 16 37 H 0.03 0.30 8.02 -51.93 -0.42 -0.12 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.40 6.66 -51.93 -0.35 0.06 16 41 H 0.10 0.93 7.78 -51.93 -0.40 0.53 16 42 H 0.07 0.28 5.61 -51.93 -0.29 -0.01 16 43 H 0.13 0.39 6.34 -51.93 -0.33 0.06 16 44 H 0.13 0.52 8.14 -51.92 -0.42 0.10 16 45 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 46 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 47 H 0.10 1.22 7.64 -51.93 -0.40 0.82 16 48 H 0.04 0.38 6.79 -51.93 -0.35 0.02 16 49 H 0.09 1.15 4.80 -51.93 -0.25 0.90 16 LS Contribution 365.67 15.07 5.51 5.51 Total: -1.00 -35.35 365.67 -9.66 -45.01 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -8.49 Total: -2.98 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 0.51 Total: -24.87 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.09 Total: -34.65 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -2.09 Total: -25.84 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Atomic # 16 Polarization: 21.23 SS G_CDS: -0.52 Total: 20.71 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.35 -9.66 -45.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337393760.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.918 kcal (2) G-P(sol) polarization free energy of solvation -35.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds