Wall clock time and date at job start Tue Mar 31 2020 11:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47385 * 2 1 4 4 C 1.53005 * 109.47072 * 239.99555 * 2 1 3 5 5 C 1.50699 * 109.46933 * 60.00056 * 4 2 1 6 6 H 1.08000 * 119.99819 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99997 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99749 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99830 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.46928 * 90.00018 * 9 7 5 11 11 H 1.48500 * 109.46885 * 210.00171 * 9 7 5 12 12 H 1.48501 * 109.47019 * 329.99670 * 9 7 5 13 13 C 1.53006 * 109.46881 * 120.00047 * 2 1 3 14 14 N 1.46901 * 109.46808 * 293.89930 * 13 2 1 15 15 C 1.47937 * 111.00101 * 212.08784 * 14 13 2 16 16 C 1.53912 * 113.33476 * 192.19344 * 15 14 13 17 17 C 1.50541 * 112.94240 * 317.75186 * 16 15 14 18 18 C 1.54523 * 108.85904 * 91.74749 * 17 16 15 19 19 H 1.08998 * 109.03869 * 43.34099 * 18 17 16 20 20 S 1.81400 * 109.03514 * 162.28299 * 18 17 16 21 21 C 1.81400 * 101.92287 * 305.00011 * 20 18 17 22 22 O 1.42095 * 108.58208 * 59.48718 * 20 18 17 23 23 O 1.42100 * 108.57817 * 190.51356 * 20 18 17 24 24 C 1.45872 * 111.67417 * 282.77337 * 18 17 16 25 25 C 1.44306 * 110.99351 * 84.68615 * 14 13 2 26 26 H 1.08997 * 109.46854 * 304.79688 * 1 2 3 27 27 H 1.09000 * 109.46660 * 64.80209 * 1 2 3 28 28 H 1.09001 * 109.47176 * 184.79741 * 1 2 3 29 29 H 1.09000 * 109.47434 * 175.39174 * 3 2 1 30 30 H 1.09007 * 109.46600 * 295.38771 * 3 2 1 31 31 H 1.08996 * 109.47154 * 55.38308 * 3 2 1 32 32 H 1.09001 * 109.47103 * 180.02562 * 4 2 1 33 33 H 1.08997 * 109.47422 * 300.00050 * 4 2 1 34 34 H 0.97001 * 119.99662 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.46795 * 173.90467 * 13 2 1 36 36 H 1.08996 * 109.47195 * 53.90444 * 13 2 1 37 37 H 1.09004 * 108.71177 * 313.18719 * 15 14 13 38 38 H 1.08996 * 108.70936 * 71.32173 * 15 14 13 39 39 H 1.09006 * 108.78835 * 196.86043 * 16 15 14 40 40 H 1.09000 * 108.79032 * 78.64249 * 16 15 14 41 41 H 1.08996 * 109.57163 * 331.93632 * 17 16 15 42 42 H 1.08997 * 109.56998 * 211.56471 * 17 16 15 43 43 H 1.08994 * 109.47393 * 60.00147 * 21 20 18 44 44 H 1.09000 * 109.47013 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.47036 * 299.99800 * 21 20 18 46 46 H 1.08997 * 108.84485 * 182.32410 * 24 18 17 47 47 H 1.09007 * 108.84208 * 300.78212 * 24 18 17 48 48 H 1.08996 * 109.70059 * 101.64355 * 25 14 13 49 49 H 1.08996 * 109.73164 * 341.06815 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9172 0.8673 -2.3806 7 6 1.8712 -0.4818 -3.7320 8 7 1.4332 0.1384 -4.8057 9 14 2.9451 -2.0007 -3.9033 10 1 2.0865 -3.2113 -3.9492 11 1 3.7375 -1.9078 -5.1558 12 1 3.8651 -2.0900 -2.7410 13 6 2.0400 -0.7213 1.2493 14 7 1.6742 0.0510 2.4442 15 6 2.6912 -0.1036 3.5073 16 6 2.2293 0.4300 4.8751 17 6 1.4991 1.7428 4.7767 18 6 -0.0145 1.4635 4.6398 19 1 -0.2960 0.6782 5.3412 20 16 -0.9337 2.9744 5.0434 21 6 -0.2984 3.3694 6.6959 22 8 -0.5330 4.0014 4.1469 23 8 -2.3126 2.6493 5.1543 24 6 -0.3644 1.0420 3.2879 25 6 0.3340 -0.2667 2.8748 26 1 -0.3633 0.5865 0.8439 27 1 -0.3633 0.4375 -0.9299 28 1 -0.3633 -1.0241 0.0859 29 1 3.1270 1.4436 0.0826 30 1 1.7458 1.9318 -0.9285 31 1 1.6109 1.9796 0.8457 32 1 3.1301 -0.7218 -1.2490 33 1 1.6767 -1.7490 -1.2492 34 1 1.6675 -0.1931 -5.6867 35 1 3.1246 -0.8168 1.1964 36 1 1.5903 -1.7126 1.3055 37 1 2.9334 -1.1616 3.6084 38 1 3.5918 0.4337 3.2104 39 1 3.1027 0.5611 5.5140 40 1 1.5686 -0.3056 5.3340 41 1 1.8498 2.2910 3.9023 42 1 1.6822 2.3307 5.6761 43 1 0.7790 3.5256 6.6433 44 1 -0.7798 4.2758 7.0631 45 1 -0.5132 2.5440 7.3747 46 1 -1.4434 0.8981 3.2322 47 1 -0.0780 1.8279 2.5889 48 1 0.3729 -0.9466 3.7257 49 1 -0.2145 -0.7333 2.0566 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337393760.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:49 Heat of formation + Delta-G solvation = -97.706768 kcal Electronic energy + Delta-G solvation = -26703.912012 eV Core-core repulsion = 23178.199360 eV Total energy + Delta-G solvation = -3525.712652 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.63918 -38.19196 -37.90507 -36.98093 -35.32195 -34.15017 -33.28378 -30.47498 -29.63220 -28.64103 -27.81561 -26.22289 -25.61614 -23.87667 -21.91756 -20.66195 -19.72384 -19.51017 -18.84353 -18.13924 -17.13181 -16.96341 -16.47387 -16.40485 -16.05488 -15.73171 -15.26262 -15.04574 -14.81654 -14.45664 -14.31223 -14.14119 -14.06313 -13.88094 -13.66703 -13.40403 -13.28156 -13.04411 -12.98284 -12.88719 -12.72007 -12.67456 -12.29337 -12.20838 -12.19287 -11.89530 -11.83673 -11.78843 -11.71208 -11.59684 -11.38694 -11.26007 -10.94862 -10.85225 -10.68875 -10.63109 -8.91805 -8.20455 -6.20805 -0.86644 1.35688 1.37681 1.48970 1.91998 2.40280 2.81051 3.04317 3.09111 3.14390 3.57385 3.69787 4.05862 4.08798 4.15828 4.19541 4.23600 4.26472 4.31441 4.41003 4.47290 4.58025 4.62127 4.70844 4.80818 4.88402 4.89297 4.90192 4.95916 4.98556 5.05762 5.11301 5.12955 5.19625 5.24655 5.28591 5.33814 5.42597 5.47710 5.50575 5.58011 5.67273 5.79020 5.86739 6.28751 6.46308 6.52782 6.86978 7.41295 8.96188 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023472 B = 0.003326 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.601766 B = 8416.604536 C = 9034.137722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.044 4.044 3 C -0.105 4.105 4 C -0.002 4.002 5 C -0.503 4.503 6 H 0.040 0.960 7 C -0.002 4.002 8 N -0.957 5.957 9 Si 0.944 3.056 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.247 1.247 13 C 0.080 3.920 14 N -0.550 5.550 15 C 0.056 3.944 16 C -0.108 4.108 17 C -0.105 4.105 18 C -0.539 4.539 19 H 0.166 0.834 20 S 2.400 3.600 21 C -0.635 4.635 22 O -0.988 6.988 23 O -0.992 6.992 24 C -0.119 4.119 25 C 0.068 3.932 26 H 0.069 0.931 27 H 0.027 0.973 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.020 0.980 31 H 0.062 0.938 32 H 0.014 0.986 33 H 0.011 0.989 34 H 0.262 0.738 35 H 0.067 0.933 36 H 0.039 0.961 37 H 0.035 0.965 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.108 0.892 43 H 0.156 0.844 44 H 0.135 0.865 45 H 0.159 0.841 46 H 0.070 0.930 47 H 0.066 0.934 48 H 0.062 0.938 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.869 -0.376 31.056 31.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.044 4.044 3 C -0.162 4.162 4 C -0.039 4.039 5 C -0.541 4.541 6 H 0.058 0.942 7 C -0.197 4.197 8 N -0.599 5.599 9 Si 0.769 3.231 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.170 1.170 13 C -0.048 4.048 14 N -0.275 5.275 15 C -0.071 4.071 16 C -0.147 4.147 17 C -0.143 4.143 18 C -0.650 4.650 19 H 0.184 0.816 20 S 2.590 3.410 21 C -0.788 4.788 22 O -0.985 6.985 23 O -0.989 6.989 24 C -0.158 4.158 25 C -0.062 4.062 26 H 0.087 0.913 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.032 0.968 33 H 0.030 0.970 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.126 0.874 43 H 0.174 0.826 44 H 0.154 0.846 45 H 0.178 0.822 46 H 0.089 0.911 47 H 0.085 0.915 48 H 0.081 0.919 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.197 0.575 30.272 30.302 hybrid contribution 0.592 -1.556 -0.785 1.840 sum 1.790 -0.980 29.487 29.558 Atomic orbital electron populations 1.21939 0.95721 1.00349 1.00616 1.20326 0.95188 0.95771 0.93159 1.21461 0.99372 0.95844 0.99530 1.19581 0.95679 0.95240 0.93445 1.21449 1.29984 1.11986 0.90678 0.94218 1.25973 0.97680 1.00399 0.95692 1.70083 1.48447 1.42938 0.98457 0.85744 0.79633 0.79767 0.77963 1.19591 1.21554 1.17039 1.22054 0.99768 0.93803 0.89172 1.60488 1.02332 1.58733 1.05939 1.22535 0.94370 0.99109 0.91085 1.21315 1.01596 0.96433 0.95320 1.21425 0.88757 0.99707 1.04406 1.28962 1.09580 1.19880 1.06551 0.81601 1.08227 0.75783 0.77625 0.79385 1.30107 1.15040 1.13830 1.19855 1.93546 1.84249 1.56467 1.64220 1.93529 1.32592 1.85098 1.87677 1.20342 1.00449 1.00556 0.94493 1.21901 0.89278 0.94831 1.00203 0.91268 0.95405 0.93550 0.94162 0.96064 0.91936 0.96794 0.97044 0.92951 0.91492 0.94292 0.94682 0.91484 0.88593 0.90581 0.90757 0.87436 0.82567 0.84616 0.82234 0.91123 0.91494 0.91948 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.92 6.80 71.98 0.49 -4.43 16 2 C -0.04 -1.67 0.61 -52.18 -0.03 -1.70 16 3 C -0.10 -4.14 7.99 71.98 0.58 -3.56 16 4 C 0.00 -0.08 3.11 29.85 0.09 0.02 16 5 C -0.50 -28.96 8.08 25.60 0.21 -28.75 16 6 H 0.04 2.54 5.95 -2.91 -0.02 2.52 16 7 C 0.00 -0.13 5.47 84.66 0.46 0.34 16 8 N -0.96 -61.54 13.96 21.45 0.30 -61.24 16 9 Si 0.94 45.22 27.47 68.60 1.88 47.11 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 12 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 13 C 0.08 2.33 4.13 86.31 0.36 2.68 16 14 N -0.55 -12.80 2.93 -896.26 -2.62 -15.42 16 15 C 0.06 0.94 5.21 86.41 0.45 1.39 16 16 C -0.11 -1.04 5.27 30.11 0.16 -0.88 16 17 C -0.10 -1.11 4.92 30.32 0.15 -0.96 16 18 C -0.54 -6.89 2.17 28.93 0.06 -6.83 16 19 H 0.17 0.91 7.59 -2.40 -0.02 0.90 16 20 S 2.40 39.25 4.80 -56.49 -0.27 38.98 16 21 C -0.64 -2.86 10.07 113.37 1.14 -1.72 16 22 O -0.99 -26.29 18.02 -127.37 -2.30 -28.59 16 23 O -0.99 -24.45 18.10 -127.37 -2.30 -26.75 16 24 C -0.12 -2.47 3.73 28.74 0.11 -2.36 16 25 C 0.07 1.42 4.23 87.12 0.37 1.79 16 26 H 0.07 2.29 4.97 -2.39 -0.01 2.28 16 27 H 0.03 1.25 6.48 -2.39 -0.02 1.24 16 28 H 0.05 1.63 7.68 -2.39 -0.02 1.61 16 29 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.02 0.97 6.48 -2.38 -0.02 0.95 16 31 H 0.06 2.24 7.61 -2.39 -0.02 2.23 16 32 H 0.01 0.64 7.20 -2.39 -0.02 0.63 16 33 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 34 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 35 H 0.07 1.91 7.76 -2.38 -0.02 1.90 16 36 H 0.04 1.10 7.74 -2.39 -0.02 1.08 16 37 H 0.03 0.57 8.02 -2.39 -0.02 0.55 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 40 H 0.08 0.54 6.66 -2.39 -0.02 0.53 16 41 H 0.07 1.24 7.78 -2.39 -0.02 1.22 16 42 H 0.11 0.28 5.61 -2.39 -0.01 0.27 16 43 H 0.16 0.01 6.34 -2.39 -0.02 -0.01 16 44 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.16 -0.20 8.14 -2.39 -0.02 -0.22 16 46 H 0.07 1.46 8.13 -2.39 -0.02 1.44 16 47 H 0.07 1.76 7.64 -2.38 -0.02 1.74 16 48 H 0.06 1.01 6.79 -2.39 -0.02 0.99 16 49 H 0.07 1.79 4.80 -2.39 -0.01 1.77 16 Total: -1.00 -83.25 365.67 0.14 -83.11 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 0.86 Total: 7.78 kcal Atomic # 6 Polarization: -49.57 SS G_CDS: 4.59 Total: -44.98 kcal Atomic # 7 Polarization: -74.34 SS G_CDS: -2.32 Total: -76.66 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: -4.60 Total: -55.34 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.88 Total: 47.11 kcal Atomic # 16 Polarization: 39.25 SS G_CDS: -0.27 Total: 38.98 kcal Total: -83.25 0.14 -83.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337393760.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.599 kcal (2) G-P(sol) polarization free energy of solvation -83.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds