Wall clock time and date at job start Tue Mar 31 2020 12:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47184 * 2 1 4 4 C 1.53002 * 109.47240 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.46951 * 185.30336 * 4 3 2 6 6 C 1.46497 * 119.99958 * 273.05273 * 5 4 3 7 7 C 1.53002 * 109.47350 * 54.40018 * 6 5 4 8 8 C 1.52994 * 109.47210 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47113 * 59.99879 * 8 7 6 10 10 C 1.53003 * 109.47338 * 299.99603 * 9 8 7 11 11 C 1.52994 * 109.46694 * 60.00141 * 10 9 8 12 12 S 1.65608 * 119.99980 * 93.06013 * 5 4 3 13 13 O 1.42096 * 104.27586 * 26.06523 * 12 5 4 14 14 O 1.42095 * 104.27912 * 153.92600 * 12 5 4 15 15 C 1.81403 * 104.44574 * 269.99489 * 12 5 4 16 16 C 1.53001 * 109.47222 * 179.97438 * 15 12 5 17 17 C 1.50700 * 109.47212 * 180.02562 * 16 15 12 18 18 H 1.07997 * 119.99994 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00033 * 180.02562 * 17 16 15 20 20 N 1.31523 * 119.99988 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00137 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47160 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47317 * 120.00379 * 21 19 17 24 24 H 1.48502 * 109.47320 * 240.00029 * 21 19 17 25 25 H 1.09005 * 109.47319 * 299.99871 * 1 2 3 26 26 H 1.09009 * 109.47268 * 59.99855 * 1 2 3 27 27 H 1.09000 * 109.47030 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47207 * 240.00648 * 2 1 3 29 29 H 1.08994 * 109.47675 * 120.00258 * 2 1 3 30 30 H 1.09002 * 109.46519 * 60.00227 * 3 2 1 31 31 H 1.08995 * 109.47243 * 300.00155 * 3 2 1 32 32 H 1.09003 * 109.46974 * 65.30073 * 4 3 2 33 33 H 1.09004 * 109.47041 * 305.30646 * 4 3 2 34 34 H 1.09007 * 109.47111 * 174.39800 * 6 5 4 35 35 H 1.09000 * 109.46547 * 300.00222 * 7 6 5 36 36 H 1.09001 * 109.47034 * 59.99511 * 7 6 5 37 37 H 1.09000 * 109.47722 * 299.99717 * 8 7 6 38 38 H 1.08997 * 109.46957 * 179.97438 * 8 7 6 39 39 H 1.09004 * 109.47508 * 179.97438 * 9 8 7 40 40 H 1.09004 * 109.47547 * 59.99786 * 9 8 7 41 41 H 1.08997 * 109.46662 * 300.00277 * 10 9 8 42 42 H 1.08992 * 109.47059 * 179.97438 * 10 9 8 43 43 H 1.09005 * 109.47058 * 180.02562 * 11 10 9 44 44 H 1.09000 * 109.47722 * 60.00160 * 11 10 9 45 45 H 1.08995 * 109.47516 * 300.00044 * 15 12 5 46 46 H 1.09006 * 109.47155 * 59.99916 * 15 12 5 47 47 H 1.09004 * 109.46762 * 300.00486 * 16 15 12 48 48 H 1.09001 * 109.46615 * 60.00025 * 16 15 12 49 49 H 0.96993 * 120.00050 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8178 0.1270 6 6 4.2382 3.6451 -1.0685 7 6 2.9330 3.6796 -1.8661 8 6 3.1207 4.5442 -3.1143 9 6 4.2332 3.9523 -3.9820 10 6 5.5385 3.9179 -3.1845 11 6 5.3507 3.0533 -1.9363 12 16 4.4071 3.4371 1.6228 13 8 4.7248 2.2968 2.4088 14 8 5.3764 4.4443 1.3677 15 6 2.8486 4.1799 2.1797 16 6 3.0433 4.7932 3.5678 17 6 1.7484 5.4097 4.0307 18 1 0.8742 5.3687 3.3979 19 6 1.6801 6.0271 5.2616 20 7 2.7448 6.0775 6.0320 21 14 0.0753 6.7919 5.8351 22 1 -0.9642 6.6023 4.7916 23 1 -0.3621 6.1386 7.0949 24 1 0.2765 8.2437 6.0744 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.9329 1.0133 -0.9345 33 1 3.9337 0.8485 0.8378 34 1 4.5095 4.6583 -0.7718 35 1 2.6617 2.6665 -2.1627 36 1 2.1405 4.1017 -1.2480 37 1 3.3918 5.5573 -2.8173 38 1 2.1910 4.5684 -3.6827 39 1 4.3667 4.5679 -4.8716 40 1 3.9621 2.9391 -4.2792 41 1 5.8094 4.9310 -2.8875 42 1 6.3308 3.4958 -3.8026 43 1 6.2805 3.0291 -1.3679 44 1 5.0796 2.0402 -2.2333 45 1 2.5454 4.9570 1.4781 46 1 2.0766 3.4119 2.2271 47 1 3.3463 4.0157 4.2692 48 1 3.8154 5.5611 3.5207 49 1 2.6969 6.5121 6.8978 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339156032.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:45 Heat of formation + Delta-G solvation = -116.373745 kcal Electronic energy + Delta-G solvation = -26526.651409 eV Core-core repulsion = 23000.129296 eV Total energy + Delta-G solvation = -3526.522113 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.26331 -36.78795 -36.08354 -35.40486 -34.02364 -33.83604 -31.16830 -30.87325 -29.91886 -28.04060 -25.61270 -23.72967 -22.79564 -22.23459 -21.46437 -20.84859 -19.72082 -18.47035 -17.58651 -16.60991 -16.33562 -15.44938 -15.31494 -15.13065 -14.55901 -14.55022 -14.32235 -14.16601 -14.01961 -13.41469 -13.19310 -13.04154 -12.95552 -12.52656 -12.44944 -12.29669 -11.84795 -11.72904 -11.63826 -11.55978 -11.51360 -11.43509 -11.22692 -11.11373 -11.07908 -10.97158 -10.89730 -10.70945 -10.43530 -10.39512 -10.34289 -10.25393 -10.23226 -9.72216 -9.26585 -8.70729 -8.50085 -6.11903 -4.17284 0.79539 3.02787 3.25265 3.32556 3.35925 4.30526 4.39553 4.50405 4.55568 4.64735 4.74487 4.83309 4.89945 4.98678 5.07536 5.14380 5.16230 5.23332 5.33651 5.37149 5.39405 5.42449 5.53085 5.55562 5.61347 5.62806 5.67871 5.76510 5.79024 5.82792 5.92253 5.92839 5.95689 6.02548 6.07455 6.10776 6.15885 6.23159 6.25684 6.34996 6.44184 6.54114 6.80964 7.31100 7.37070 7.81371 8.18470 8.86334 9.47466 10.99241 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012128 B = 0.004192 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.085884 B = 6678.201177 C = 7336.094645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.155 4.155 4 C 0.116 3.884 5 N -1.000 6.000 6 C 0.151 3.849 7 C -0.132 4.132 8 C -0.120 4.120 9 C -0.119 4.119 10 C -0.118 4.118 11 C -0.126 4.126 12 S 2.586 3.414 13 O -0.965 6.965 14 O -0.965 6.965 15 C -0.590 4.590 16 C 0.028 3.972 17 C -0.518 4.518 18 H 0.061 0.939 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.032 0.968 48 H 0.032 0.968 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.321 -8.948 -20.085 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.194 4.194 4 C -0.010 4.010 5 N -0.834 5.834 6 C 0.045 3.955 7 C -0.171 4.171 8 C -0.158 4.158 9 C -0.157 4.157 10 C -0.157 4.157 11 C -0.165 4.165 12 S 2.686 3.314 13 O -0.955 6.955 14 O -0.955 6.955 15 C -0.723 4.723 16 C -0.011 4.011 17 C -0.557 4.557 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.529 5.529 21 Si 0.726 3.274 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.051 0.949 48 H 0.050 0.950 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.641 -8.967 -19.494 21.468 hybrid contribution -1.568 0.586 0.294 1.700 sum -0.927 -8.382 -19.201 20.971 Atomic orbital electron populations 1.21769 0.95816 1.01412 1.02010 1.21457 0.95972 0.96531 1.02111 1.22423 0.96053 0.97422 1.03485 1.21325 0.93424 0.82405 1.03822 1.57828 1.82203 1.21077 1.22294 1.20848 0.94882 0.94846 0.84935 1.22102 0.97506 1.00899 0.96565 1.21542 0.98619 0.99569 0.96092 1.21553 0.95158 1.00981 0.98003 1.21520 0.97331 1.00616 0.96206 1.21863 0.98981 0.99494 0.96143 1.05772 0.78326 0.74576 0.72767 1.93518 1.83621 1.49724 1.68643 1.93529 1.57586 1.60809 1.83602 1.30553 1.18944 1.11803 1.11025 1.18960 0.99635 0.96456 0.86022 1.21031 0.95744 1.36629 1.02327 0.92029 1.25066 0.96794 0.96035 0.96584 1.69968 1.28544 1.43497 1.10866 0.86429 0.83230 0.79000 0.78724 1.19654 1.20787 1.20798 0.92412 0.92924 0.92942 0.92125 0.91623 0.91375 0.90608 0.90466 0.88994 0.88416 0.90899 0.91177 0.91614 0.91827 0.92145 0.92123 0.91550 0.91907 0.91386 0.91649 0.86366 0.86275 0.94944 0.94955 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.15 0.37 -1.01 16 2 C -0.12 -1.14 5.93 -26.73 -0.16 -1.30 16 3 C -0.15 -1.64 5.13 -26.73 -0.14 -1.78 16 4 C 0.12 1.35 5.00 -4.04 -0.02 1.33 16 5 N -1.00 -13.75 2.66 -107.30 -0.28 -14.03 16 6 C 0.15 1.82 2.40 -67.93 -0.16 1.66 16 7 C -0.13 -1.29 3.92 -26.73 -0.10 -1.39 16 8 C -0.12 -1.03 5.92 -26.74 -0.16 -1.18 16 9 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 10 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 11 C -0.13 -1.34 5.27 -26.73 -0.14 -1.48 16 12 S 2.59 48.06 5.40 -107.50 -0.58 47.48 16 13 O -0.96 -20.37 16.54 -57.54 -0.95 -21.33 16 14 O -0.96 -20.39 16.64 -57.54 -0.96 -21.35 16 15 C -0.59 -11.54 6.11 37.16 0.23 -11.32 16 16 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 17 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 18 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 21 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.82 6.70 -51.93 -0.35 0.47 16 31 H 0.08 0.72 5.27 -51.93 -0.27 0.44 16 32 H 0.08 0.74 6.74 -51.93 -0.35 0.39 16 33 H 0.09 1.19 6.85 -51.93 -0.36 0.83 16 34 H 0.10 1.31 6.99 -51.93 -0.36 0.95 16 35 H 0.07 0.64 6.09 -51.93 -0.32 0.33 16 36 H 0.07 0.71 8.05 -51.93 -0.42 0.29 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.62 6.89 -51.93 -0.36 0.26 16 45 H 0.12 2.09 8.14 -51.93 -0.42 1.66 16 46 H 0.12 2.11 6.70 -51.92 -0.35 1.76 16 47 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 384.83 15.07 5.80 5.80 Total: -1.00 -33.28 384.83 -11.43 -44.70 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -9.01 Total: -0.27 kcal Atomic # 6 Polarization: -30.20 SS G_CDS: -1.15 Total: -31.36 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.45 Total: -39.92 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -1.91 Total: -42.68 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 48.06 SS G_CDS: -0.58 Total: 47.48 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.28 -11.43 -44.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339156032.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.671 kcal (2) G-P(sol) polarization free energy of solvation -33.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds