Wall clock time and date at job start Tue Mar 31 2020 12:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47184 * 2 1 4 4 C 1.53002 * 109.47240 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.46951 * 185.30336 * 4 3 2 6 6 C 1.46497 * 119.99958 * 273.05273 * 5 4 3 7 7 C 1.53002 * 109.47350 * 54.40018 * 6 5 4 8 8 C 1.52994 * 109.47210 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47113 * 59.99879 * 8 7 6 10 10 C 1.53003 * 109.47338 * 299.99603 * 9 8 7 11 11 C 1.52994 * 109.46694 * 60.00141 * 10 9 8 12 12 S 1.65608 * 119.99980 * 93.06013 * 5 4 3 13 13 O 1.42096 * 104.27586 * 26.06523 * 12 5 4 14 14 O 1.42095 * 104.27912 * 153.92600 * 12 5 4 15 15 C 1.81403 * 104.44574 * 269.99489 * 12 5 4 16 16 C 1.53001 * 109.47222 * 179.97438 * 15 12 5 17 17 C 1.50700 * 109.47212 * 180.02562 * 16 15 12 18 18 H 1.07997 * 119.99994 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00033 * 180.02562 * 17 16 15 20 20 N 1.31523 * 119.99988 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00137 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47160 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47317 * 120.00379 * 21 19 17 24 24 H 1.48502 * 109.47320 * 240.00029 * 21 19 17 25 25 H 1.09005 * 109.47319 * 299.99871 * 1 2 3 26 26 H 1.09009 * 109.47268 * 59.99855 * 1 2 3 27 27 H 1.09000 * 109.47030 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47207 * 240.00648 * 2 1 3 29 29 H 1.08994 * 109.47675 * 120.00258 * 2 1 3 30 30 H 1.09002 * 109.46519 * 60.00227 * 3 2 1 31 31 H 1.08995 * 109.47243 * 300.00155 * 3 2 1 32 32 H 1.09003 * 109.46974 * 65.30073 * 4 3 2 33 33 H 1.09004 * 109.47041 * 305.30646 * 4 3 2 34 34 H 1.09007 * 109.47111 * 174.39800 * 6 5 4 35 35 H 1.09000 * 109.46547 * 300.00222 * 7 6 5 36 36 H 1.09001 * 109.47034 * 59.99511 * 7 6 5 37 37 H 1.09000 * 109.47722 * 299.99717 * 8 7 6 38 38 H 1.08997 * 109.46957 * 179.97438 * 8 7 6 39 39 H 1.09004 * 109.47508 * 179.97438 * 9 8 7 40 40 H 1.09004 * 109.47547 * 59.99786 * 9 8 7 41 41 H 1.08997 * 109.46662 * 300.00277 * 10 9 8 42 42 H 1.08992 * 109.47059 * 179.97438 * 10 9 8 43 43 H 1.09005 * 109.47058 * 180.02562 * 11 10 9 44 44 H 1.09000 * 109.47722 * 60.00160 * 11 10 9 45 45 H 1.08995 * 109.47516 * 300.00044 * 15 12 5 46 46 H 1.09006 * 109.47155 * 59.99916 * 15 12 5 47 47 H 1.09004 * 109.46762 * 300.00486 * 16 15 12 48 48 H 1.09001 * 109.46615 * 60.00025 * 16 15 12 49 49 H 0.96993 * 120.00050 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8178 0.1270 6 6 4.2382 3.6451 -1.0685 7 6 2.9330 3.6796 -1.8661 8 6 3.1207 4.5442 -3.1143 9 6 4.2332 3.9523 -3.9820 10 6 5.5385 3.9179 -3.1845 11 6 5.3507 3.0533 -1.9363 12 16 4.4071 3.4371 1.6228 13 8 4.7248 2.2968 2.4088 14 8 5.3764 4.4443 1.3677 15 6 2.8486 4.1799 2.1797 16 6 3.0433 4.7932 3.5678 17 6 1.7484 5.4097 4.0307 18 1 0.8742 5.3687 3.3979 19 6 1.6801 6.0271 5.2616 20 7 2.7448 6.0775 6.0320 21 14 0.0753 6.7919 5.8351 22 1 -0.9642 6.6023 4.7916 23 1 -0.3621 6.1386 7.0949 24 1 0.2765 8.2437 6.0744 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.9329 1.0133 -0.9345 33 1 3.9337 0.8485 0.8378 34 1 4.5095 4.6583 -0.7718 35 1 2.6617 2.6665 -2.1627 36 1 2.1405 4.1017 -1.2480 37 1 3.3918 5.5573 -2.8173 38 1 2.1910 4.5684 -3.6827 39 1 4.3667 4.5679 -4.8716 40 1 3.9621 2.9391 -4.2792 41 1 5.8094 4.9310 -2.8875 42 1 6.3308 3.4958 -3.8026 43 1 6.2805 3.0291 -1.3679 44 1 5.0796 2.0402 -2.2333 45 1 2.5454 4.9570 1.4781 46 1 2.0766 3.4119 2.2271 47 1 3.3463 4.0157 4.2692 48 1 3.8154 5.5611 3.5207 49 1 2.6969 6.5121 6.8978 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339156032.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:44 Heat of formation + Delta-G solvation = -136.625418 kcal Electronic energy + Delta-G solvation = -26527.529587 eV Core-core repulsion = 23000.129296 eV Total energy + Delta-G solvation = -3527.400291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.14302 -38.31980 -37.09979 -36.95552 -35.93175 -34.84043 -33.15892 -31.63303 -30.74206 -28.94252 -27.63346 -24.64984 -23.74397 -23.48089 -22.73063 -21.74405 -20.53816 -19.84811 -19.12425 -18.37529 -17.60014 -17.08477 -16.55173 -16.36465 -16.11759 -15.52632 -15.19571 -15.14582 -14.94160 -14.83236 -14.49173 -14.13406 -13.90667 -13.78723 -13.74887 -13.30892 -13.24326 -13.13952 -13.01997 -12.96305 -12.89199 -12.81424 -12.39670 -12.31838 -12.20060 -12.13077 -12.04711 -11.90183 -11.80149 -11.65318 -11.41581 -11.23898 -11.15861 -11.06729 -10.96263 -10.67555 -9.85535 -8.27867 -6.42296 -0.73193 1.39332 1.40178 1.53545 1.70146 2.36449 2.80846 3.05380 3.13469 3.57913 3.85993 3.87039 3.98331 4.01454 4.08858 4.12256 4.20407 4.31628 4.37043 4.40184 4.50462 4.60298 4.64685 4.65042 4.69269 4.77552 4.79750 4.83308 4.93786 5.00392 5.04095 5.18073 5.21302 5.22429 5.22859 5.28413 5.30366 5.32818 5.38395 5.43317 5.47257 5.48695 5.56689 5.64287 5.66273 5.77764 6.03661 6.71114 7.28075 8.84835 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012128 B = 0.004192 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.085884 B = 6678.201177 C = 7336.094645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.154 4.154 4 C 0.110 3.890 5 N -0.986 5.986 6 C 0.142 3.858 7 C -0.128 4.128 8 C -0.120 4.120 9 C -0.115 4.115 10 C -0.118 4.118 11 C -0.125 4.125 12 S 2.604 3.396 13 O -0.994 6.994 14 O -0.995 6.995 15 C -0.587 4.587 16 C 0.023 3.977 17 C -0.537 4.537 18 H 0.075 0.925 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.975 3.025 22 H -0.255 1.255 23 H -0.277 1.277 24 H -0.277 1.277 25 H 0.042 0.958 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.047 0.953 44 H 0.084 0.916 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.004 0.996 48 H 0.004 0.996 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.393 -9.726 -22.941 25.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.193 4.193 4 C -0.014 4.014 5 N -0.823 5.823 6 C 0.037 3.963 7 C -0.167 4.167 8 C -0.158 4.158 9 C -0.152 4.152 10 C -0.156 4.156 11 C -0.164 4.164 12 S 2.702 3.298 13 O -0.984 6.984 14 O -0.985 6.985 15 C -0.719 4.719 16 C -0.016 4.016 17 C -0.576 4.576 18 H 0.093 0.907 19 C -0.202 4.202 20 N -0.574 5.574 21 Si 0.798 3.202 22 H -0.179 1.179 23 H -0.203 1.203 24 H -0.203 1.203 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.127 0.873 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.066 0.934 44 H 0.102 0.898 45 H 0.156 0.844 46 H 0.156 0.844 47 H 0.022 0.978 48 H 0.022 0.978 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.439 -9.743 -22.349 24.423 hybrid contribution -0.858 0.782 1.117 1.611 sum -2.297 -8.961 -21.233 23.160 Atomic orbital electron populations 1.21773 0.95515 1.01987 1.01776 1.21461 0.96203 0.95602 1.02694 1.22428 0.94933 0.98454 1.03443 1.21579 0.94392 0.80667 1.04765 1.57465 1.82111 1.22024 1.20719 1.21114 0.97122 0.93688 0.84383 1.22095 0.95640 1.02269 0.96647 1.21565 0.99738 0.98828 0.95701 1.21537 0.93881 1.01921 0.97895 1.21532 0.98720 0.99676 0.95675 1.21876 0.97357 1.00821 0.96347 1.04916 0.77530 0.73655 0.73657 1.93472 1.83952 1.50489 1.70505 1.93482 1.58645 1.62025 1.84396 1.30456 1.20820 1.12824 1.07799 1.18805 0.98483 0.95155 0.89178 1.21507 0.96662 1.36535 1.02856 0.90678 1.26128 1.00759 0.96527 0.96767 1.70115 1.31221 1.44642 1.11465 0.85254 0.78560 0.77891 0.78487 1.17889 1.20262 1.20271 0.93871 0.91929 0.92024 0.90034 0.92611 0.93239 0.88828 0.87286 0.90532 0.90424 0.89109 0.91566 0.92553 0.90219 0.91006 0.90843 0.92683 0.90582 0.93433 0.89784 0.84399 0.84361 0.97793 0.97801 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.91 71.98 0.71 -1.71 16 2 C -0.12 -1.98 5.93 30.59 0.18 -1.80 16 3 C -0.15 -2.92 5.13 30.60 0.16 -2.76 16 4 C 0.11 2.38 5.00 86.38 0.43 2.81 16 5 N -0.99 -26.46 2.66 -493.39 -1.31 -27.77 16 6 C 0.14 3.27 2.40 44.99 0.11 3.37 16 7 C -0.13 -2.15 3.92 30.59 0.12 -2.03 16 8 C -0.12 -1.71 5.92 30.59 0.18 -1.53 16 9 C -0.11 -1.43 5.92 30.59 0.18 -1.24 16 10 C -0.12 -1.86 5.92 30.59 0.18 -1.68 16 11 C -0.12 -2.45 5.27 30.59 0.16 -2.29 16 12 S 2.60 99.89 5.40 -56.49 -0.31 99.59 16 13 O -0.99 -43.59 16.54 -127.65 -2.11 -45.71 16 14 O -1.00 -43.95 16.64 -127.65 -2.12 -46.07 16 15 C -0.59 -23.47 6.11 71.98 0.44 -23.03 16 16 C 0.02 1.22 4.98 29.85 0.15 1.37 16 17 C -0.54 -30.29 9.11 25.60 0.23 -30.05 16 18 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 19 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 20 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 21 Si 0.97 43.69 29.54 68.60 2.03 45.71 16 22 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 25 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 1.13 6.70 -2.39 -0.02 1.11 16 31 H 0.09 1.44 5.27 -2.39 -0.01 1.43 16 32 H 0.11 1.70 6.74 -2.39 -0.02 1.68 16 33 H 0.08 1.93 6.85 -2.38 -0.02 1.91 16 34 H 0.08 2.11 6.99 -2.38 -0.02 2.09 16 35 H 0.09 1.22 6.09 -2.39 -0.01 1.20 16 36 H 0.07 1.18 8.05 -2.39 -0.02 1.16 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 44 H 0.08 1.32 6.89 -2.39 -0.02 1.31 16 45 H 0.14 4.88 8.14 -2.39 -0.02 4.86 16 46 H 0.14 4.93 6.70 -2.39 -0.02 4.91 16 47 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 48 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 49 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -74.42 384.83 1.05 -73.37 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.89 Total: 18.56 kcal Atomic # 6 Polarization: -64.00 SS G_CDS: 3.70 Total: -60.30 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -1.03 Total: -85.14 kcal Atomic # 8 Polarization: -87.54 SS G_CDS: -4.24 Total: -91.78 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 99.89 SS G_CDS: -0.31 Total: 99.59 kcal Total: -74.42 1.05 -73.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339156032.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.259 kcal (2) G-P(sol) polarization free energy of solvation -74.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds