Wall clock time and date at job start Tue Mar 31 2020 12:39:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53003 * 109.47184 * 2 1
4 4 C 1.53002 * 109.47240 * 180.02562 * 3 2 1
5 5 N 1.46492 * 109.46951 * 185.30336 * 4 3 2
6 6 C 1.46497 * 119.99958 * 273.05273 * 5 4 3
7 7 C 1.53002 * 109.47350 * 54.40018 * 6 5 4
8 8 C 1.52994 * 109.47210 * 179.97438 * 7 6 5
9 9 C 1.52998 * 109.47113 * 59.99879 * 8 7 6
10 10 C 1.53003 * 109.47338 * 299.99603 * 9 8 7
11 11 C 1.52994 * 109.46694 * 60.00141 * 10 9 8
12 12 S 1.65608 * 119.99980 * 93.06013 * 5 4 3
13 13 O 1.42096 * 104.27586 * 26.06523 * 12 5 4
14 14 O 1.42095 * 104.27912 * 153.92600 * 12 5 4
15 15 C 1.81403 * 104.44574 * 269.99489 * 12 5 4
16 16 C 1.53001 * 109.47222 * 179.97438 * 15 12 5
17 17 C 1.50700 * 109.47212 * 180.02562 * 16 15 12
18 18 H 1.07997 * 119.99994 * 359.97438 * 17 16 15
19 19 C 1.37872 * 120.00033 * 180.02562 * 17 16 15
20 20 N 1.31523 * 119.99988 * 359.97438 * 19 17 16
21 21 Si 1.86794 * 120.00137 * 179.97438 * 19 17 16
22 22 H 1.48501 * 109.47160 * 359.97438 * 21 19 17
23 23 H 1.48502 * 109.47317 * 120.00379 * 21 19 17
24 24 H 1.48502 * 109.47320 * 240.00029 * 21 19 17
25 25 H 1.09005 * 109.47319 * 299.99871 * 1 2 3
26 26 H 1.09009 * 109.47268 * 59.99855 * 1 2 3
27 27 H 1.09000 * 109.47030 * 179.97438 * 1 2 3
28 28 H 1.09002 * 109.47207 * 240.00648 * 2 1 3
29 29 H 1.08994 * 109.47675 * 120.00258 * 2 1 3
30 30 H 1.09002 * 109.46519 * 60.00227 * 3 2 1
31 31 H 1.08995 * 109.47243 * 300.00155 * 3 2 1
32 32 H 1.09003 * 109.46974 * 65.30073 * 4 3 2
33 33 H 1.09004 * 109.47041 * 305.30646 * 4 3 2
34 34 H 1.09007 * 109.47111 * 174.39800 * 6 5 4
35 35 H 1.09000 * 109.46547 * 300.00222 * 7 6 5
36 36 H 1.09001 * 109.47034 * 59.99511 * 7 6 5
37 37 H 1.09000 * 109.47722 * 299.99717 * 8 7 6
38 38 H 1.08997 * 109.46957 * 179.97438 * 8 7 6
39 39 H 1.09004 * 109.47508 * 179.97438 * 9 8 7
40 40 H 1.09004 * 109.47547 * 59.99786 * 9 8 7
41 41 H 1.08997 * 109.46662 * 300.00277 * 10 9 8
42 42 H 1.08992 * 109.47059 * 179.97438 * 10 9 8
43 43 H 1.09005 * 109.47058 * 180.02562 * 11 10 9
44 44 H 1.09000 * 109.47722 * 60.00160 * 11 10 9
45 45 H 1.08995 * 109.47516 * 300.00044 * 15 12 5
46 46 H 1.09006 * 109.47155 * 59.99916 * 15 12 5
47 47 H 1.09004 * 109.46762 * 300.00486 * 16 15 12
48 48 H 1.09001 * 109.46615 * 60.00025 * 16 15 12
49 49 H 0.96993 * 120.00050 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4425 -0.0006
5 7 4.0583 2.8178 0.1270
6 6 4.2382 3.6451 -1.0685
7 6 2.9330 3.6796 -1.8661
8 6 3.1207 4.5442 -3.1143
9 6 4.2332 3.9523 -3.9820
10 6 5.5385 3.9179 -3.1845
11 6 5.3507 3.0533 -1.9363
12 16 4.4071 3.4371 1.6228
13 8 4.7248 2.2968 2.4088
14 8 5.3764 4.4443 1.3677
15 6 2.8486 4.1799 2.1797
16 6 3.0433 4.7932 3.5678
17 6 1.7484 5.4097 4.0307
18 1 0.8742 5.3687 3.3979
19 6 1.6801 6.0271 5.2616
20 7 2.7448 6.0775 6.0320
21 14 0.0753 6.7919 5.8351
22 1 -0.9642 6.6023 4.7916
23 1 -0.3621 6.1386 7.0949
24 1 0.2765 8.2437 6.0744
25 1 -0.3634 0.5138 0.8900
26 1 -0.3634 0.5139 -0.8900
27 1 -0.3633 -1.0277 -0.0005
28 1 1.8933 -0.5137 -0.8901
29 1 1.8933 -0.5138 0.8899
30 1 1.6766 1.9563 0.8901
31 1 1.6766 1.9564 -0.8899
32 1 3.9329 1.0133 -0.9345
33 1 3.9337 0.8485 0.8378
34 1 4.5095 4.6583 -0.7718
35 1 2.6617 2.6665 -2.1627
36 1 2.1405 4.1017 -1.2480
37 1 3.3918 5.5573 -2.8173
38 1 2.1910 4.5684 -3.6827
39 1 4.3667 4.5679 -4.8716
40 1 3.9621 2.9391 -4.2792
41 1 5.8094 4.9310 -2.8875
42 1 6.3308 3.4958 -3.8026
43 1 6.2805 3.0291 -1.3679
44 1 5.0796 2.0402 -2.2333
45 1 2.5454 4.9570 1.4781
46 1 2.0766 3.4119 2.2271
47 1 3.3463 4.0157 4.2692
48 1 3.8154 5.5611 3.5207
49 1 2.6969 6.5121 6.8978
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000339156032.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:39:44
Heat of formation + Delta-G solvation = -136.625418 kcal
Electronic energy + Delta-G solvation = -26527.529587 eV
Core-core repulsion = 23000.129296 eV
Total energy + Delta-G solvation = -3527.400291 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.181 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-40.14302 -38.31980 -37.09979 -36.95552 -35.93175 -34.84043 -33.15892 -31.63303
-30.74206 -28.94252 -27.63346 -24.64984 -23.74397 -23.48089 -22.73063 -21.74405
-20.53816 -19.84811 -19.12425 -18.37529 -17.60014 -17.08477 -16.55173 -16.36465
-16.11759 -15.52632 -15.19571 -15.14582 -14.94160 -14.83236 -14.49173 -14.13406
-13.90667 -13.78723 -13.74887 -13.30892 -13.24326 -13.13952 -13.01997 -12.96305
-12.89199 -12.81424 -12.39670 -12.31838 -12.20060 -12.13077 -12.04711 -11.90183
-11.80149 -11.65318 -11.41581 -11.23898 -11.15861 -11.06729 -10.96263 -10.67555
-9.85535 -8.27867 -6.42296 -0.73193 1.39332 1.40178 1.53545 1.70146
2.36449 2.80846 3.05380 3.13469 3.57913 3.85993 3.87039 3.98331
4.01454 4.08858 4.12256 4.20407 4.31628 4.37043 4.40184 4.50462
4.60298 4.64685 4.65042 4.69269 4.77552 4.79750 4.83308 4.93786
5.00392 5.04095 5.18073 5.21302 5.22429 5.22859 5.28413 5.30366
5.32818 5.38395 5.43317 5.47257 5.48695 5.56689 5.64287 5.66273
5.77764 6.03661 6.71114 7.28075 8.84835
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.012128 B = 0.004192 C = 0.003816
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2308.085884 B = 6678.201177 C = 7336.094645
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.121 4.121
3 C -0.154 4.154
4 C 0.110 3.890
5 N -0.986 5.986
6 C 0.142 3.858
7 C -0.128 4.128
8 C -0.120 4.120
9 C -0.115 4.115
10 C -0.118 4.118
11 C -0.125 4.125
12 S 2.604 3.396
13 O -0.994 6.994
14 O -0.995 6.995
15 C -0.587 4.587
16 C 0.023 3.977
17 C -0.537 4.537
18 H 0.075 0.925
19 C -0.003 4.003
20 N -0.935 5.935
21 Si 0.975 3.025
22 H -0.255 1.255
23 H -0.277 1.277
24 H -0.277 1.277
25 H 0.042 0.958
26 H 0.062 0.938
27 H 0.061 0.939
28 H 0.081 0.919
29 H 0.055 0.945
30 H 0.049 0.951
31 H 0.093 0.907
32 H 0.109 0.891
33 H 0.076 0.924
34 H 0.078 0.922
35 H 0.091 0.909
36 H 0.066 0.934
37 H 0.056 0.944
38 H 0.079 0.921
39 H 0.071 0.929
40 H 0.073 0.927
41 H 0.054 0.946
42 H 0.076 0.924
43 H 0.047 0.953
44 H 0.084 0.916
45 H 0.138 0.862
46 H 0.138 0.862
47 H 0.004 0.996
48 H 0.004 0.996
49 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.393 -9.726 -22.941 25.032
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.160 4.160
3 C -0.193 4.193
4 C -0.014 4.014
5 N -0.823 5.823
6 C 0.037 3.963
7 C -0.167 4.167
8 C -0.158 4.158
9 C -0.152 4.152
10 C -0.156 4.156
11 C -0.164 4.164
12 S 2.702 3.298
13 O -0.984 6.984
14 O -0.985 6.985
15 C -0.719 4.719
16 C -0.016 4.016
17 C -0.576 4.576
18 H 0.093 0.907
19 C -0.202 4.202
20 N -0.574 5.574
21 Si 0.798 3.202
22 H -0.179 1.179
23 H -0.203 1.203
24 H -0.203 1.203
25 H 0.061 0.939
26 H 0.081 0.919
27 H 0.080 0.920
28 H 0.100 0.900
29 H 0.074 0.926
30 H 0.068 0.932
31 H 0.112 0.888
32 H 0.127 0.873
33 H 0.095 0.905
34 H 0.096 0.904
35 H 0.109 0.891
36 H 0.084 0.916
37 H 0.074 0.926
38 H 0.098 0.902
39 H 0.090 0.910
40 H 0.092 0.908
41 H 0.073 0.927
42 H 0.094 0.906
43 H 0.066 0.934
44 H 0.102 0.898
45 H 0.156 0.844
46 H 0.156 0.844
47 H 0.022 0.978
48 H 0.022 0.978
49 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -1.439 -9.743 -22.349 24.423
hybrid contribution -0.858 0.782 1.117 1.611
sum -2.297 -8.961 -21.233 23.160
Atomic orbital electron populations
1.21773 0.95515 1.01987 1.01776 1.21461 0.96203 0.95602 1.02694
1.22428 0.94933 0.98454 1.03443 1.21579 0.94392 0.80667 1.04765
1.57465 1.82111 1.22024 1.20719 1.21114 0.97122 0.93688 0.84383
1.22095 0.95640 1.02269 0.96647 1.21565 0.99738 0.98828 0.95701
1.21537 0.93881 1.01921 0.97895 1.21532 0.98720 0.99676 0.95675
1.21876 0.97357 1.00821 0.96347 1.04916 0.77530 0.73655 0.73657
1.93472 1.83952 1.50489 1.70505 1.93482 1.58645 1.62025 1.84396
1.30456 1.20820 1.12824 1.07799 1.18805 0.98483 0.95155 0.89178
1.21507 0.96662 1.36535 1.02856 0.90678 1.26128 1.00759 0.96527
0.96767 1.70115 1.31221 1.44642 1.11465 0.85254 0.78560 0.77891
0.78487 1.17889 1.20262 1.20271 0.93871 0.91929 0.92024 0.90034
0.92611 0.93239 0.88828 0.87286 0.90532 0.90424 0.89109 0.91566
0.92553 0.90219 0.91006 0.90843 0.92683 0.90582 0.93433 0.89784
0.84399 0.84361 0.97793 0.97801 0.92356
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.42 9.91 71.98 0.71 -1.71 16
2 C -0.12 -1.98 5.93 30.59 0.18 -1.80 16
3 C -0.15 -2.92 5.13 30.60 0.16 -2.76 16
4 C 0.11 2.38 5.00 86.38 0.43 2.81 16
5 N -0.99 -26.46 2.66 -493.39 -1.31 -27.77 16
6 C 0.14 3.27 2.40 44.99 0.11 3.37 16
7 C -0.13 -2.15 3.92 30.59 0.12 -2.03 16
8 C -0.12 -1.71 5.92 30.59 0.18 -1.53 16
9 C -0.11 -1.43 5.92 30.59 0.18 -1.24 16
10 C -0.12 -1.86 5.92 30.59 0.18 -1.68 16
11 C -0.12 -2.45 5.27 30.59 0.16 -2.29 16
12 S 2.60 99.89 5.40 -56.49 -0.31 99.59 16
13 O -0.99 -43.59 16.54 -127.65 -2.11 -45.71 16
14 O -1.00 -43.95 16.64 -127.65 -2.12 -46.07 16
15 C -0.59 -23.47 6.11 71.98 0.44 -23.03 16
16 C 0.02 1.22 4.98 29.85 0.15 1.37 16
17 C -0.54 -30.29 9.11 25.60 0.23 -30.05 16
18 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16
19 C 0.00 -0.20 5.46 84.65 0.46 0.26 16
20 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16
21 Si 0.97 43.69 29.54 68.60 2.03 45.71 16
22 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16
23 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16
24 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16
25 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16
26 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16
27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16
28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16
29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
30 H 0.05 1.13 6.70 -2.39 -0.02 1.11 16
31 H 0.09 1.44 5.27 -2.39 -0.01 1.43 16
32 H 0.11 1.70 6.74 -2.39 -0.02 1.68 16
33 H 0.08 1.93 6.85 -2.38 -0.02 1.91 16
34 H 0.08 2.11 6.99 -2.38 -0.02 2.09 16
35 H 0.09 1.22 6.09 -2.39 -0.01 1.20 16
36 H 0.07 1.18 8.05 -2.39 -0.02 1.16 16
37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16
39 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16
40 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16
41 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16
42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16
43 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16
44 H 0.08 1.32 6.89 -2.39 -0.02 1.31 16
45 H 0.14 4.88 8.14 -2.39 -0.02 4.86 16
46 H 0.14 4.93 6.70 -2.39 -0.02 4.91 16
47 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16
48 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16
49 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16
Total: -1.00 -74.42 384.83 1.05 -73.37
By element:
Atomic # 1 Polarization: 17.66 SS G_CDS: 0.89 Total: 18.56 kcal
Atomic # 6 Polarization: -64.00 SS G_CDS: 3.70 Total: -60.30 kcal
Atomic # 7 Polarization: -84.12 SS G_CDS: -1.03 Total: -85.14 kcal
Atomic # 8 Polarization: -87.54 SS G_CDS: -4.24 Total: -91.78 kcal
Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal
Atomic # 16 Polarization: 99.89 SS G_CDS: -0.31 Total: 99.59 kcal
Total: -74.42 1.05 -73.37 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000339156032.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.259 kcal
(2) G-P(sol) polarization free energy of solvation -74.419 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.678 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.367 kcal
(6) G-S(sol) free energy of system = (1) + (5) -136.625 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds