Wall clock time and date at job start Tue Mar 31 2020 11:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.46867 * 2 1 4 4 C 1.52991 * 109.47394 * 119.99941 * 2 1 3 5 5 C 1.53001 * 109.47397 * 175.00275 * 4 2 1 6 6 N 1.46895 * 109.47363 * 181.03616 * 5 4 2 7 7 C 1.46903 * 111.00198 * 214.95160 * 6 5 4 8 8 C 1.50704 * 109.46686 * 66.04492 * 7 6 5 9 9 H 1.07998 * 120.00016 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99738 * 179.97438 * 8 7 6 11 11 N 1.31523 * 119.99764 * 0.02562 * 10 8 7 12 12 Si 1.86792 * 120.00186 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46792 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47480 * 120.00186 * 12 10 8 15 15 H 1.48500 * 109.47467 * 240.00474 * 12 10 8 16 16 C 1.46902 * 111.00274 * 90.99881 * 6 5 4 17 17 C 1.53008 * 109.46799 * 287.34433 * 16 6 5 18 18 C 1.52590 * 109.23899 * 302.73491 * 17 16 6 19 19 C 1.53059 * 109.97132 * 169.67405 * 18 17 16 20 20 S 1.81669 * 108.96446 * 63.71412 * 19 18 17 21 21 O 1.42105 * 108.66501 * 191.34890 * 20 19 18 22 22 O 1.42101 * 108.75113 * 60.04036 * 20 19 18 23 23 C 1.81670 * 101.30770 * 305.67974 * 20 19 18 24 24 C 1.52590 * 109.23773 * 181.62791 * 17 16 6 25 25 H 1.08993 * 109.47253 * 299.99995 * 1 2 3 26 26 H 1.08997 * 109.46976 * 59.99906 * 1 2 3 27 27 H 1.09000 * 109.46756 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47152 * 240.00691 * 2 1 3 29 29 H 1.09001 * 109.47088 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47079 * 300.00229 * 3 2 1 31 31 H 1.09000 * 109.46670 * 60.00396 * 3 2 1 32 32 H 1.09002 * 109.47501 * 55.00217 * 4 2 1 33 33 H 1.09000 * 109.47482 * 295.00363 * 4 2 1 34 34 H 1.08998 * 109.46900 * 61.03307 * 5 4 2 35 35 H 1.09007 * 109.46890 * 301.03220 * 5 4 2 36 36 H 1.09004 * 109.47240 * 186.04543 * 7 6 5 37 37 H 1.08991 * 109.47061 * 306.04862 * 7 6 5 38 38 H 0.96999 * 119.99179 * 179.97438 * 11 10 8 39 39 H 1.09004 * 109.47303 * 167.34573 * 16 6 5 40 40 H 1.08998 * 109.46915 * 47.33905 * 16 6 5 41 41 H 1.08994 * 109.24112 * 62.18216 * 17 16 6 42 42 H 1.08991 * 109.39238 * 289.87434 * 18 17 16 43 43 H 1.09006 * 109.38479 * 49.56455 * 18 17 16 44 44 H 1.08994 * 109.58238 * 303.85396 * 19 18 17 45 45 H 1.08998 * 109.62446 * 183.59031 * 19 18 17 46 46 H 1.09004 * 109.54442 * 294.44300 * 23 20 19 47 47 H 1.08998 * 109.63357 * 174.20539 * 23 20 19 48 48 H 1.08997 * 109.38522 * 310.44105 * 24 17 16 49 49 H 1.08997 * 109.39077 * 70.23361 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8309 1.1879 6 7 4.0526 -1.5452 2.3753 7 6 5.3482 -1.0111 2.8158 8 6 5.1697 0.4056 3.2978 9 1 4.1916 0.8632 3.2791 10 6 6.2550 1.1172 3.7636 11 7 7.4460 0.5597 3.7868 12 14 6.0340 2.8734 4.3604 13 1 4.6071 3.2642 4.2311 14 1 6.4456 2.9680 5.7840 15 1 6.8733 3.7840 3.5409 16 6 4.1372 -2.9899 2.1228 17 6 2.7274 -3.5826 2.0746 18 6 2.0086 -3.2773 3.3855 19 6 0.5247 -3.6320 3.2630 20 16 0.3656 -5.4217 2.9948 21 8 -0.9751 -5.7082 2.6210 22 8 0.9392 -6.1023 4.1026 23 6 1.4367 -5.6617 1.5472 24 6 2.8228 -5.0893 1.8526 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6055 -1.7198 1.2951 33 1 1.7517 -0.1583 2.1369 34 1 4.0002 0.1680 1.1605 35 1 3.8540 -1.3781 0.2905 36 1 5.7370 -1.6251 3.6283 37 1 6.0496 -1.0254 1.9818 38 1 8.2095 1.0605 4.1142 39 1 4.7044 -3.4660 2.9227 40 1 4.6370 -3.1635 1.1698 41 1 2.1763 -3.1320 1.2493 42 1 2.4561 -3.8629 4.1885 43 1 2.1087 -2.2163 3.6145 44 1 0.0896 -3.0966 2.4191 45 1 0.0047 -3.3529 4.1793 46 1 1.0097 -5.1445 0.6879 47 1 1.5219 -6.7258 1.3270 48 1 3.4898 -5.2899 1.0142 49 1 3.2182 -5.5631 2.7510 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339866196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:51 Heat of formation + Delta-G solvation = -92.806801 kcal Electronic energy + Delta-G solvation = -26576.479300 eV Core-core repulsion = 23050.979126 eV Total energy + Delta-G solvation = -3525.500174 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.86922 -37.12198 -36.39714 -36.07568 -35.09953 -32.55649 -31.86752 -29.46975 -28.87337 -26.99163 -26.24159 -23.65288 -23.50391 -22.75836 -20.61327 -19.85070 -19.61471 -18.89615 -16.96949 -16.43966 -16.40362 -15.84109 -15.34279 -14.92579 -14.81616 -14.43295 -14.24215 -13.88214 -13.76327 -13.65268 -13.14223 -13.03393 -12.90003 -12.45444 -12.26445 -12.19004 -12.06892 -11.98352 -11.83245 -11.78415 -11.54156 -11.39395 -11.22097 -11.13796 -10.92921 -10.82863 -10.81541 -10.61093 -10.49829 -10.35335 -10.17554 -9.96998 -9.71598 -9.62127 -9.22378 -8.49299 -7.32361 -6.07565 -4.08566 -0.02960 2.59464 3.26924 3.35263 3.38862 3.57417 3.85306 4.32761 4.44204 4.49226 4.64970 4.69593 4.77122 4.97907 5.08902 5.14079 5.17680 5.24827 5.28008 5.35380 5.43706 5.55768 5.69777 5.72423 5.76933 5.83158 5.87647 5.89439 5.98706 6.00810 6.02175 6.06267 6.18103 6.24436 6.32198 6.39980 6.45948 6.51357 6.57683 6.75998 6.87299 7.24291 7.30573 7.77477 8.04313 8.14996 8.49201 8.99923 9.56030 11.03235 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013376 B = 0.004114 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.730081 B = 6804.491556 C = 7962.751883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.116 4.116 5 C 0.057 3.943 6 N -0.534 5.534 7 C 0.193 3.807 8 C -0.505 4.505 9 H 0.064 0.936 10 C 0.056 3.944 11 N -0.898 5.898 12 Si 0.894 3.106 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.286 1.286 16 C 0.062 3.938 17 C -0.109 4.109 18 C -0.103 4.103 19 C -0.594 4.594 20 S 2.408 3.592 21 O -0.955 6.955 22 O -0.940 6.940 23 C -0.600 4.600 24 C -0.107 4.107 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.020 0.980 36 H 0.030 0.970 37 H -0.011 1.011 38 H 0.260 0.740 39 H 0.071 0.929 40 H 0.028 0.972 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.129 0.871 45 H 0.132 0.868 46 H 0.130 0.870 47 H 0.129 0.871 48 H 0.084 0.916 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.462 -7.962 -7.377 16.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.206 4.206 4 C -0.154 4.154 5 C -0.071 4.071 6 N -0.258 5.258 7 C 0.068 3.932 8 C -0.543 4.543 9 H 0.082 0.918 10 C -0.145 4.145 11 N -0.538 5.538 12 Si 0.722 3.278 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.212 1.212 16 C -0.067 4.067 17 C -0.128 4.128 18 C -0.141 4.141 19 C -0.725 4.725 20 S 2.592 3.408 21 O -0.952 6.952 22 O -0.937 6.937 23 C -0.729 4.729 24 C -0.146 4.146 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.039 0.961 36 H 0.048 0.952 37 H 0.007 0.993 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.046 0.954 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.134 0.866 44 H 0.148 0.852 45 H 0.151 0.849 46 H 0.148 0.852 47 H 0.148 0.852 48 H 0.103 0.897 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.100 -8.483 -6.459 16.891 hybrid contribution 1.002 1.387 -0.849 1.911 sum -12.098 -7.095 -7.308 15.815 Atomic orbital electron populations 1.21840 0.95896 1.01129 1.01420 1.21127 0.94972 0.96758 0.98828 1.21878 1.01936 0.95762 1.00995 1.21964 0.96422 0.99957 0.97048 1.22153 0.94369 1.00195 0.90370 1.61989 1.31755 1.00271 1.31754 1.19757 0.83263 0.95487 0.94655 1.21174 0.94478 0.97295 1.41374 0.91762 1.24973 0.95185 0.98355 0.96018 1.69967 0.99304 1.37163 1.47322 0.86501 0.78197 0.84638 0.78443 1.19660 1.21050 1.21183 1.22068 0.93794 0.91120 0.99732 1.21572 0.99029 0.93532 0.98681 1.21350 0.87745 1.07224 0.97797 1.30191 1.06950 1.23617 1.11698 1.08246 0.75787 0.79200 0.77614 1.93569 1.33771 1.83761 1.84065 1.93580 1.79393 1.71400 1.49327 1.30183 1.12031 1.10376 1.20327 1.21365 0.93273 0.95841 1.04135 0.92718 0.93245 0.93167 0.91953 0.91883 0.93667 0.92675 0.91879 0.91364 0.89688 0.96135 0.95197 0.99276 0.92994 0.91040 0.95370 0.89543 0.90243 0.86588 0.85223 0.84927 0.85185 0.85229 0.89737 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.19 37.16 0.34 -1.15 16 2 C -0.10 -1.18 2.92 -90.62 -0.26 -1.44 16 3 C -0.15 -1.92 8.95 37.16 0.33 -1.59 16 4 C -0.12 -1.59 4.19 -26.73 -0.11 -1.70 16 5 C 0.06 0.97 4.37 -3.83 -0.02 0.95 16 6 N -0.53 -9.88 3.28 -236.06 -0.77 -10.66 16 7 C 0.19 4.63 4.66 -4.97 -0.02 4.61 16 8 C -0.50 -13.24 8.12 -34.44 -0.28 -13.52 16 9 H 0.06 1.67 7.55 -52.49 -0.40 1.28 16 10 C 0.06 1.52 5.46 -17.81 -0.10 1.42 16 11 N -0.90 -25.78 13.29 55.43 0.74 -25.04 16 12 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 13 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 16 C 0.06 0.93 4.34 -3.82 -0.02 0.92 16 17 C -0.11 -1.25 1.45 -91.04 -0.13 -1.39 16 18 C -0.10 -1.22 4.42 -26.91 -0.12 -1.33 16 19 C -0.59 -5.56 6.35 37.19 0.24 -5.32 16 20 S 2.41 24.95 5.30 -107.50 -0.57 24.38 16 21 O -0.95 -12.79 18.10 -57.82 -1.05 -13.84 16 22 O -0.94 -13.05 17.95 -57.82 -1.04 -14.09 16 23 C -0.60 -4.79 6.35 37.18 0.24 -4.55 16 24 C -0.11 -1.02 5.02 -26.92 -0.14 -1.15 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.91 6.59 -51.93 -0.34 0.56 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.75 4.15 -51.93 -0.22 0.53 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.67 5.16 -51.93 -0.27 1.40 16 35 H 0.02 0.33 7.50 -51.92 -0.39 -0.06 16 36 H 0.03 0.78 7.86 -51.93 -0.41 0.37 16 37 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.07 1.12 7.80 -51.93 -0.40 0.72 16 40 H 0.03 0.42 7.71 -51.93 -0.40 0.02 16 41 H 0.09 0.91 5.21 -51.93 -0.27 0.64 16 42 H 0.08 0.96 8.01 -51.93 -0.42 0.54 16 43 H 0.12 1.62 6.76 -51.93 -0.35 1.27 16 44 H 0.13 0.98 7.90 -51.93 -0.41 0.57 16 45 H 0.13 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.13 0.80 8.14 -51.92 -0.42 0.38 16 47 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 49 H 0.08 0.82 8.01 -51.93 -0.42 0.40 16 LS Contribution 380.73 15.07 5.74 5.74 Total: -1.00 -32.63 380.73 -10.92 -43.55 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -8.89 Total: -0.71 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: -0.05 Total: -25.24 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.04 Total: -35.70 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -2.08 Total: -27.93 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 24.95 SS G_CDS: -0.57 Total: 24.38 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.63 -10.92 -43.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339866196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.259 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds