Wall clock time and date at job start Tue Mar 31 2020 11:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.46867 * 2 1 4 4 C 1.52991 * 109.47394 * 119.99941 * 2 1 3 5 5 C 1.53001 * 109.47397 * 175.00275 * 4 2 1 6 6 N 1.46895 * 109.47363 * 181.03616 * 5 4 2 7 7 C 1.46903 * 111.00198 * 214.95160 * 6 5 4 8 8 C 1.50704 * 109.46686 * 66.04492 * 7 6 5 9 9 H 1.07998 * 120.00016 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99738 * 179.97438 * 8 7 6 11 11 N 1.31523 * 119.99764 * 0.02562 * 10 8 7 12 12 Si 1.86792 * 120.00186 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46792 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47480 * 120.00186 * 12 10 8 15 15 H 1.48500 * 109.47467 * 240.00474 * 12 10 8 16 16 C 1.46902 * 111.00274 * 90.99881 * 6 5 4 17 17 C 1.53008 * 109.46799 * 287.34433 * 16 6 5 18 18 C 1.52590 * 109.23899 * 302.73491 * 17 16 6 19 19 C 1.53059 * 109.97132 * 169.67405 * 18 17 16 20 20 S 1.81669 * 108.96446 * 63.71412 * 19 18 17 21 21 O 1.42105 * 108.66501 * 191.34890 * 20 19 18 22 22 O 1.42101 * 108.75113 * 60.04036 * 20 19 18 23 23 C 1.81670 * 101.30770 * 305.67974 * 20 19 18 24 24 C 1.52590 * 109.23773 * 181.62791 * 17 16 6 25 25 H 1.08993 * 109.47253 * 299.99995 * 1 2 3 26 26 H 1.08997 * 109.46976 * 59.99906 * 1 2 3 27 27 H 1.09000 * 109.46756 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47152 * 240.00691 * 2 1 3 29 29 H 1.09001 * 109.47088 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47079 * 300.00229 * 3 2 1 31 31 H 1.09000 * 109.46670 * 60.00396 * 3 2 1 32 32 H 1.09002 * 109.47501 * 55.00217 * 4 2 1 33 33 H 1.09000 * 109.47482 * 295.00363 * 4 2 1 34 34 H 1.08998 * 109.46900 * 61.03307 * 5 4 2 35 35 H 1.09007 * 109.46890 * 301.03220 * 5 4 2 36 36 H 1.09004 * 109.47240 * 186.04543 * 7 6 5 37 37 H 1.08991 * 109.47061 * 306.04862 * 7 6 5 38 38 H 0.96999 * 119.99179 * 179.97438 * 11 10 8 39 39 H 1.09004 * 109.47303 * 167.34573 * 16 6 5 40 40 H 1.08998 * 109.46915 * 47.33905 * 16 6 5 41 41 H 1.08994 * 109.24112 * 62.18216 * 17 16 6 42 42 H 1.08991 * 109.39238 * 289.87434 * 18 17 16 43 43 H 1.09006 * 109.38479 * 49.56455 * 18 17 16 44 44 H 1.08994 * 109.58238 * 303.85396 * 19 18 17 45 45 H 1.08998 * 109.62446 * 183.59031 * 19 18 17 46 46 H 1.09004 * 109.54442 * 294.44300 * 23 20 19 47 47 H 1.08998 * 109.63357 * 174.20539 * 23 20 19 48 48 H 1.08997 * 109.38522 * 310.44105 * 24 17 16 49 49 H 1.08997 * 109.39077 * 70.23361 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8309 1.1879 6 7 4.0526 -1.5452 2.3753 7 6 5.3482 -1.0111 2.8158 8 6 5.1697 0.4056 3.2978 9 1 4.1916 0.8632 3.2791 10 6 6.2550 1.1172 3.7636 11 7 7.4460 0.5597 3.7868 12 14 6.0340 2.8734 4.3604 13 1 4.6071 3.2642 4.2311 14 1 6.4456 2.9680 5.7840 15 1 6.8733 3.7840 3.5409 16 6 4.1372 -2.9899 2.1228 17 6 2.7274 -3.5826 2.0746 18 6 2.0086 -3.2773 3.3855 19 6 0.5247 -3.6320 3.2630 20 16 0.3656 -5.4217 2.9948 21 8 -0.9751 -5.7082 2.6210 22 8 0.9392 -6.1023 4.1026 23 6 1.4367 -5.6617 1.5472 24 6 2.8228 -5.0893 1.8526 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6055 -1.7198 1.2951 33 1 1.7517 -0.1583 2.1369 34 1 4.0002 0.1680 1.1605 35 1 3.8540 -1.3781 0.2905 36 1 5.7370 -1.6251 3.6283 37 1 6.0496 -1.0254 1.9818 38 1 8.2095 1.0605 4.1142 39 1 4.7044 -3.4660 2.9227 40 1 4.6370 -3.1635 1.1698 41 1 2.1763 -3.1320 1.2493 42 1 2.4561 -3.8629 4.1885 43 1 2.1087 -2.2163 3.6145 44 1 0.0896 -3.0966 2.4191 45 1 0.0047 -3.3529 4.1793 46 1 1.0097 -5.1445 0.6879 47 1 1.5219 -6.7258 1.3270 48 1 3.4898 -5.2899 1.0142 49 1 3.2182 -5.5631 2.7510 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339866196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:51 Heat of formation + Delta-G solvation = -114.383622 kcal Electronic energy + Delta-G solvation = -26577.414941 eV Core-core repulsion = 23050.979126 eV Total energy + Delta-G solvation = -3526.435815 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.03449 -38.09051 -37.38568 -36.99981 -36.42784 -34.51176 -32.66021 -30.59356 -30.31960 -27.94006 -27.82954 -24.70228 -24.47814 -24.37156 -21.87329 -21.07821 -20.61430 -19.73424 -18.45878 -17.82725 -17.21685 -16.94165 -16.61593 -16.32662 -16.04055 -15.68492 -15.36813 -14.90046 -14.81404 -14.63886 -14.34122 -14.16629 -13.96548 -13.83581 -13.39349 -13.29091 -13.14349 -13.01330 -12.97783 -12.91702 -12.76198 -12.67675 -12.57455 -12.35648 -12.27876 -12.09315 -11.93534 -11.87034 -11.80224 -11.49855 -11.36096 -11.18204 -11.06947 -10.80490 -10.73631 -10.59139 -8.89540 -8.17882 -6.25863 -0.82241 1.39435 1.41390 1.53236 1.83819 2.40743 2.79704 3.03277 3.15332 3.27246 3.71434 3.77252 3.80620 3.92463 4.10553 4.14365 4.21056 4.30620 4.32506 4.43601 4.48484 4.51869 4.72889 4.77741 4.83611 4.86149 4.90109 4.93277 4.96253 4.97376 5.02685 5.09283 5.13231 5.18287 5.23189 5.25872 5.33635 5.36220 5.42175 5.54050 5.57931 5.64220 5.73574 5.74057 6.12644 6.44373 6.75345 6.92481 7.43610 8.93085 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013376 B = 0.004114 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.730081 B = 6804.491556 C = 7962.751883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.150 4.150 4 C -0.106 4.106 5 C 0.059 3.941 6 N -0.534 5.534 7 C 0.208 3.792 8 C -0.510 4.510 9 H 0.063 0.937 10 C 0.003 3.997 11 N -0.936 5.936 12 Si 0.959 3.041 13 H -0.263 1.263 14 H -0.282 1.282 15 H -0.281 1.281 16 C 0.057 3.943 17 C -0.101 4.101 18 C -0.106 4.106 19 C -0.586 4.586 20 S 2.414 3.586 21 O -0.986 6.986 22 O -0.983 6.983 23 C -0.580 4.580 24 C -0.109 4.109 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.031 0.969 36 H 0.002 0.998 37 H -0.041 1.041 38 H 0.262 0.738 39 H 0.057 0.943 40 H 0.033 0.967 41 H 0.106 0.894 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.157 0.843 45 H 0.141 0.859 46 H 0.162 0.838 47 H 0.152 0.848 48 H 0.101 0.899 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.704 -8.153 -9.155 19.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 C -0.207 4.207 4 C -0.144 4.144 5 C -0.069 4.069 6 N -0.257 5.257 7 C 0.082 3.918 8 C -0.548 4.548 9 H 0.081 0.919 10 C -0.195 4.195 11 N -0.577 5.577 12 Si 0.785 3.215 13 H -0.187 1.187 14 H -0.208 1.208 15 H -0.207 1.207 16 C -0.071 4.071 17 C -0.119 4.119 18 C -0.144 4.144 19 C -0.717 4.717 20 S 2.601 3.399 21 O -0.983 6.983 22 O -0.981 6.981 23 C -0.712 4.712 24 C -0.147 4.147 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.020 0.980 37 H -0.024 1.024 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.123 0.877 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.175 0.825 45 H 0.159 0.841 46 H 0.180 0.820 47 H 0.170 0.830 48 H 0.120 0.880 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.387 -8.689 -8.221 19.490 hybrid contribution 1.765 1.436 -0.345 2.302 sum -13.622 -7.253 -8.566 17.650 Atomic orbital electron populations 1.21813 0.93913 1.02457 1.01817 1.21119 0.96539 0.95632 0.98080 1.21884 1.00442 0.96975 1.01390 1.21883 0.93667 1.01401 0.97423 1.22162 0.96581 0.98223 0.89906 1.61956 1.28264 1.02329 1.33171 1.19380 0.85283 0.94526 0.92618 1.21466 0.94325 0.98344 1.40680 0.91875 1.25813 0.94902 1.02480 0.96308 1.70090 1.00134 1.38867 1.48584 0.85478 0.78514 0.79725 0.77794 1.18687 1.20779 1.20722 1.22186 0.96630 0.88888 0.99405 1.21512 0.96281 0.95079 0.99066 1.21279 0.89663 1.05626 0.97861 1.30114 1.05171 1.22899 1.13556 1.07862 0.75226 0.79039 0.77741 1.93530 1.35860 1.84352 1.84526 1.93527 1.79873 1.72697 1.51961 1.30027 1.09743 1.12315 1.19146 1.21352 0.94691 0.93957 1.04743 0.93132 0.92139 0.91384 0.90904 0.94209 0.91916 0.93643 0.89411 0.93074 0.93023 0.95063 0.98034 1.02372 0.92932 0.92423 0.94853 0.87666 0.91243 0.88798 0.82530 0.84056 0.82032 0.83037 0.88027 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.19 71.98 0.66 -1.74 16 2 C -0.09 -2.04 2.92 -10.79 -0.03 -2.07 16 3 C -0.15 -3.71 8.95 71.99 0.64 -3.07 16 4 C -0.11 -2.71 4.19 30.59 0.13 -2.58 16 5 C 0.06 1.99 4.37 86.30 0.38 2.36 16 6 N -0.53 -20.16 3.28 -900.76 -2.96 -23.12 16 7 C 0.21 10.50 4.66 85.56 0.40 10.90 16 8 C -0.51 -27.65 8.12 25.60 0.21 -27.44 16 9 H 0.06 3.37 7.55 -2.91 -0.02 3.35 16 10 C 0.00 0.15 5.46 84.65 0.46 0.61 16 11 N -0.94 -55.47 13.29 21.45 0.28 -55.19 16 12 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 13 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 16 C 0.06 1.72 4.34 86.31 0.37 2.09 16 17 C -0.10 -2.09 1.45 -11.06 -0.02 -2.10 16 18 C -0.11 -2.37 4.42 30.48 0.13 -2.24 16 19 C -0.59 -9.54 6.35 72.00 0.46 -9.08 16 20 S 2.41 44.98 5.30 -56.49 -0.30 44.68 16 21 O -0.99 -24.38 18.10 -127.38 -2.31 -26.68 16 22 O -0.98 -26.74 17.95 -127.38 -2.29 -29.02 16 23 C -0.58 -6.88 6.35 71.99 0.46 -6.42 16 24 C -0.11 -1.73 5.02 30.47 0.15 -1.58 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.04 1.15 6.59 -2.39 -0.02 1.14 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 1.77 4.15 -2.39 -0.01 1.76 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.05 2.09 5.16 -2.39 -0.01 2.07 16 35 H 0.03 0.97 7.50 -2.38 -0.02 0.95 16 36 H 0.00 0.09 7.86 -2.39 -0.02 0.07 16 37 H -0.04 -2.30 8.12 -2.39 -0.02 -2.32 16 38 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 39 H 0.06 1.87 7.80 -2.38 -0.02 1.85 16 40 H 0.03 0.97 7.71 -2.39 -0.02 0.95 16 41 H 0.11 1.78 5.21 -2.39 -0.01 1.77 16 42 H 0.07 1.68 8.01 -2.39 -0.02 1.66 16 43 H 0.09 2.58 6.76 -2.38 -0.02 2.56 16 44 H 0.16 1.70 7.90 -2.39 -0.02 1.68 16 45 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.16 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.10 1.37 8.10 -2.39 -0.02 1.35 16 49 H 0.08 1.39 8.01 -2.39 -0.02 1.37 16 Total: -1.00 -73.81 380.73 -0.23 -74.03 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.90 Total: 11.98 kcal Atomic # 6 Polarization: -46.77 SS G_CDS: 4.41 Total: -42.36 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -2.67 Total: -78.30 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -4.59 Total: -55.71 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 44.98 SS G_CDS: -0.30 Total: 44.68 kcal Total: -73.81 -0.23 -74.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339866196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.349 kcal (2) G-P(sol) polarization free energy of solvation -73.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds