Wall clock time and date at job start Tue Mar 31 2020 12:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46810 * 2 1 4 4 C 1.52999 * 109.46810 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46810 * 179.97438 * 4 3 2 6 6 O 1.42899 * 109.46630 * 179.97438 * 5 4 3 7 7 C 1.42904 * 113.99760 * 179.97438 * 6 5 4 8 8 C 1.53499 * 114.20632 * 149.99701 * 7 6 5 9 9 N 1.47065 * 87.98500 * 139.65438 * 8 7 6 10 10 C 1.34776 * 136.05885 * 152.83898 * 9 8 7 11 11 O 1.21584 * 119.99876 * 2.86710 * 10 9 8 12 12 C 1.47645 * 120.00123 * 182.86067 * 10 9 8 13 13 C 1.40011 * 119.89470 * 352.37847 * 12 10 9 14 14 C 1.36316 * 120.10277 * 180.27578 * 13 12 10 15 15 C 1.40885 * 119.89569 * 359.97365 * 14 13 12 16 16 C 1.41105 * 120.10328 * 180.02562 * 15 14 13 17 17 H 1.08007 * 120.00275 * 154.96319 * 16 15 14 18 18 C 1.40230 * 120.00084 * 334.95839 * 16 15 14 19 19 N 1.30646 * 119.99847 * 338.04920 * 18 16 15 20 20 Si 1.86800 * 120.00023 * 158.04912 * 18 16 15 21 21 H 1.48502 * 109.47144 * 84.92025 * 20 18 16 22 22 H 1.48495 * 109.47179 * 204.92123 * 20 18 16 23 23 H 1.48503 * 109.47000 * 324.91821 * 20 18 16 24 24 C 1.40886 * 119.79387 * 0.02562 * 15 14 13 25 25 C 1.36318 * 119.88951 * 359.97438 * 24 15 14 26 26 C 1.47068 * 87.88601 * 333.10324 * 9 8 7 27 27 H 1.08998 * 109.47285 * 299.99970 * 1 2 3 28 28 H 1.09007 * 109.47314 * 60.00082 * 1 2 3 29 29 H 1.09002 * 109.47343 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47285 * 240.00030 * 2 1 3 31 31 H 1.08994 * 109.47016 * 119.99971 * 2 1 3 32 32 H 1.08998 * 109.47172 * 59.99961 * 3 2 1 33 33 H 1.09003 * 109.47237 * 299.99546 * 3 2 1 34 34 H 1.08998 * 109.47285 * 60.00030 * 4 3 2 35 35 H 1.08994 * 109.47016 * 299.99971 * 4 3 2 36 36 H 1.08998 * 109.47172 * 59.99961 * 5 4 3 37 37 H 1.09001 * 109.46731 * 299.99462 * 5 4 3 38 38 H 1.09001 * 113.27985 * 16.93185 * 7 6 5 39 39 H 1.09001 * 113.46394 * 24.87726 * 8 7 6 40 40 H 1.08997 * 113.52430 * 254.44296 * 8 7 6 41 41 H 1.08000 * 119.94807 * 0.24742 * 13 12 10 42 42 H 1.08002 * 120.04972 * 179.97438 * 14 13 12 43 43 H 0.96994 * 119.99692 * 179.97438 * 19 18 16 44 44 H 1.08000 * 120.05684 * 179.97438 * 24 15 14 45 45 H 1.08000 * 119.94761 * 179.97438 * 25 24 15 46 46 H 1.09005 * 113.46702 * 141.67591 * 26 9 8 47 47 H 1.08996 * 113.46594 * 272.11517 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8852 0.0000 6 8 5.5089 2.8851 0.0012 7 6 6.0901 4.1906 0.0001 8 6 7.4531 4.2733 0.7013 9 7 7.8949 5.1709 -0.3767 10 6 8.7986 6.1625 -0.5046 11 8 9.5192 6.4527 0.4308 12 6 8.9137 6.8965 -1.7805 13 6 8.2001 6.4601 -2.9033 14 6 8.3076 7.1313 -4.0850 15 6 9.1379 8.2659 -4.1751 16 6 9.2520 8.9642 -5.3959 17 1 9.5289 10.0082 -5.3971 18 6 9.0060 8.3028 -6.6077 19 7 9.0952 7.0009 -6.6711 20 14 8.5506 9.2831 -8.1312 21 1 9.7873 9.7567 -8.8030 22 1 7.7804 8.4206 -9.0629 23 1 7.7219 10.4513 -7.7387 24 6 9.8539 8.7011 -3.0425 25 6 9.7401 8.0235 -1.8651 26 6 6.9119 4.5147 -1.2519 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9328 0.9289 0.8908 36 1 3.7161 3.3995 0.8895 37 1 3.7169 3.3984 -0.8905 38 1 5.3900 4.9741 0.2902 39 1 7.9885 3.3241 0.7225 40 1 7.4114 4.7555 1.6779 41 1 7.5639 5.5902 -2.8333 42 1 7.7572 6.7937 -4.9507 43 1 8.9247 6.5434 -7.5092 44 1 10.4920 9.5701 -3.1069 45 1 10.2889 8.3561 -0.9964 46 1 6.4100 5.2021 -1.9329 47 1 7.3018 3.6305 -1.7562 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340206817.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:50 Heat of formation + Delta-G solvation = -39.803471 kcal Electronic energy + Delta-G solvation = -25269.978039 eV Core-core repulsion = 21611.332311 eV Total energy + Delta-G solvation = -3658.645728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.26238 -38.31185 -37.26092 -36.59892 -35.58582 -33.88828 -31.62309 -30.55021 -29.51160 -28.55758 -26.27502 -26.13241 -25.36556 -22.45464 -22.22440 -21.38237 -20.96464 -20.74096 -18.78415 -17.54849 -17.26810 -16.50518 -16.46042 -15.85378 -15.31561 -14.98076 -14.96515 -14.46956 -14.00852 -13.88688 -13.69134 -13.29570 -13.09789 -13.06232 -12.95802 -12.62307 -12.44576 -12.15053 -11.99406 -11.90894 -11.65057 -11.50176 -11.35023 -11.32116 -11.29457 -11.05774 -11.00632 -10.93958 -10.77160 -10.64786 -10.08693 -9.68063 -9.42829 -9.25962 -8.97289 -8.35379 -7.72580 -7.57258 -7.08707 -4.60585 2.21593 2.88287 2.92975 2.99386 3.02380 3.07538 3.58884 3.72315 3.87382 4.31960 4.50140 4.55588 4.57723 4.71091 4.82114 4.86620 4.98155 5.15854 5.21467 5.24390 5.36855 5.41569 5.46094 5.51942 5.54200 5.60228 5.65775 5.67292 5.71909 5.74406 5.79466 5.92731 5.97240 6.04038 6.13037 6.30363 6.40181 6.76882 6.81149 7.02338 7.07867 7.11323 7.43221 7.66177 7.79399 7.85735 8.04862 8.26859 8.37698 8.60875 8.74150 8.99550 9.84939 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011871 B = 0.002497 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.112391 B =11208.630685 C =13287.976960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.119 4.119 5 C 0.060 3.940 6 O -0.369 6.369 7 C 0.048 3.952 8 C 0.105 3.895 9 N -0.647 5.647 10 C 0.605 3.395 11 O -0.570 6.570 12 C -0.281 4.281 13 C -0.074 4.074 14 C -0.182 4.182 15 C 0.130 3.870 16 C -0.444 4.444 17 H 0.086 0.914 18 C 0.077 3.923 19 N -0.766 5.766 20 Si 0.910 3.090 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.257 1.257 24 C -0.238 4.238 25 C -0.021 4.021 26 C 0.082 3.918 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.287 0.713 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.091 0.909 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.789 -10.811 6.732 19.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.157 4.157 5 C -0.017 4.017 6 O -0.287 6.287 7 C -0.011 4.011 8 C -0.018 4.018 9 N -0.385 5.385 10 C 0.404 3.596 11 O -0.452 6.452 12 C -0.286 4.286 13 C -0.093 4.093 14 C -0.201 4.201 15 C 0.127 3.873 16 C -0.472 4.472 17 H 0.104 0.896 18 C -0.145 4.145 19 N -0.389 5.389 20 Si 0.733 3.267 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.181 1.181 24 C -0.258 4.258 25 C -0.040 4.040 26 C -0.042 4.042 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.123 0.877 42 H 0.132 0.868 43 H 0.099 0.901 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.109 0.891 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.131 -10.860 7.036 19.161 hybrid contribution -0.243 0.434 -0.869 1.001 sum -14.374 -10.426 6.168 18.798 Atomic orbital electron populations 1.21784 0.95863 1.01611 1.01849 1.21515 0.95822 0.96642 1.02226 1.21543 0.94481 0.97220 1.02353 1.21542 0.95086 0.95629 1.03450 1.22609 0.80911 0.97821 1.00368 1.87904 1.19700 1.26639 1.94478 1.23988 0.94037 0.85540 0.97533 1.23005 0.91304 0.94207 0.93289 1.49033 1.39893 1.34915 1.14628 1.18202 0.76210 0.76812 0.88356 1.90651 1.43901 1.68027 1.42591 1.18763 1.13390 1.03946 0.92463 1.21046 0.97137 0.98107 0.93005 1.20873 1.03068 0.99751 0.96421 1.17786 0.87055 0.90339 0.92165 1.19813 1.38972 0.98204 0.90183 0.89640 1.26103 0.92043 0.94916 1.01451 1.69765 1.30678 1.09524 1.28891 0.86285 0.79859 0.80745 0.79790 1.19034 1.19813 1.18094 1.20696 1.06511 1.04343 0.94243 1.20360 0.94265 0.92836 0.96547 1.23576 0.88360 0.97185 0.95037 0.92769 0.92697 0.92791 0.91860 0.91951 0.91837 0.91693 0.90989 0.91141 0.93242 0.92987 0.88072 0.89713 0.90479 0.87744 0.86794 0.90132 0.88312 0.88132 0.89132 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.12 -0.75 5.93 -26.73 -0.16 -0.91 16 3 C -0.12 -0.75 5.21 -26.73 -0.14 -0.89 16 4 C -0.12 -0.92 5.58 -26.73 -0.15 -1.07 16 5 C 0.06 0.53 5.78 37.16 0.21 0.74 16 6 O -0.37 -4.27 10.40 -35.23 -0.37 -4.64 16 7 C 0.05 0.59 4.65 -26.35 -0.12 0.46 16 8 C 0.11 1.51 8.46 -8.50 -0.07 1.44 16 9 N -0.65 -11.74 3.68 -186.61 -0.69 -12.42 16 10 C 0.61 13.69 8.00 -12.42 -0.10 13.59 16 11 O -0.57 -14.36 17.12 5.29 0.09 -14.27 16 12 C -0.28 -6.66 5.89 -104.73 -0.62 -7.28 16 13 C -0.07 -1.69 9.12 -39.61 -0.36 -2.05 16 14 C -0.18 -4.49 8.65 -39.27 -0.34 -4.83 16 15 C 0.13 3.33 5.56 -106.81 -0.59 2.74 16 16 C -0.44 -11.07 9.02 -37.75 -0.34 -11.41 16 17 H 0.09 2.03 7.94 -52.48 -0.42 1.61 16 18 C 0.08 1.80 5.03 -17.31 -0.09 1.71 16 19 N -0.77 -18.39 11.24 55.56 0.62 -17.77 16 20 Si 0.91 17.14 29.61 -169.99 -5.03 12.11 16 21 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 22 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 23 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 24 C -0.24 -5.84 9.73 -39.27 -0.38 -6.23 16 25 C -0.02 -0.50 9.52 -39.61 -0.38 -0.88 16 26 C 0.08 1.20 6.31 -8.64 -0.05 1.14 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.10 1.11 7.88 -51.93 -0.41 0.70 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.10 2.05 3.81 -52.49 -0.20 1.85 16 42 H 0.11 2.82 6.34 -52.49 -0.33 2.49 16 43 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 44 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 45 H 0.10 2.34 7.65 -52.49 -0.40 1.94 16 46 H 0.09 1.31 6.15 -51.93 -0.32 0.99 16 47 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 385.84 15.07 5.81 5.81 Total: -1.00 -29.34 385.84 -10.42 -39.77 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -7.55 Total: 5.60 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -3.31 Total: -14.19 kcal Atomic # 7 Polarization: -30.13 SS G_CDS: -0.06 Total: -30.19 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.28 Total: -18.91 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.11 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.34 -10.42 -39.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340206817.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.036 kcal (2) G-P(sol) polarization free energy of solvation -29.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds