Wall clock time and date at job start Tue Mar 31 2020 12:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46810 * 2 1 4 4 C 1.52999 * 109.46810 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46810 * 179.97438 * 4 3 2 6 6 O 1.42899 * 109.46630 * 179.97438 * 5 4 3 7 7 C 1.42904 * 113.99760 * 179.97438 * 6 5 4 8 8 C 1.53499 * 114.20632 * 149.99701 * 7 6 5 9 9 N 1.47065 * 87.98500 * 139.65438 * 8 7 6 10 10 C 1.34776 * 136.05885 * 152.83898 * 9 8 7 11 11 O 1.21584 * 119.99876 * 2.86710 * 10 9 8 12 12 C 1.47645 * 120.00123 * 182.86067 * 10 9 8 13 13 C 1.40011 * 119.89470 * 352.37847 * 12 10 9 14 14 C 1.36316 * 120.10277 * 180.27578 * 13 12 10 15 15 C 1.40885 * 119.89569 * 359.97365 * 14 13 12 16 16 C 1.41105 * 120.10328 * 180.02562 * 15 14 13 17 17 H 1.08007 * 120.00275 * 154.96319 * 16 15 14 18 18 C 1.40230 * 120.00084 * 334.95839 * 16 15 14 19 19 N 1.30646 * 119.99847 * 338.04920 * 18 16 15 20 20 Si 1.86800 * 120.00023 * 158.04912 * 18 16 15 21 21 H 1.48502 * 109.47144 * 84.92025 * 20 18 16 22 22 H 1.48495 * 109.47179 * 204.92123 * 20 18 16 23 23 H 1.48503 * 109.47000 * 324.91821 * 20 18 16 24 24 C 1.40886 * 119.79387 * 0.02562 * 15 14 13 25 25 C 1.36318 * 119.88951 * 359.97438 * 24 15 14 26 26 C 1.47068 * 87.88601 * 333.10324 * 9 8 7 27 27 H 1.08998 * 109.47285 * 299.99970 * 1 2 3 28 28 H 1.09007 * 109.47314 * 60.00082 * 1 2 3 29 29 H 1.09002 * 109.47343 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47285 * 240.00030 * 2 1 3 31 31 H 1.08994 * 109.47016 * 119.99971 * 2 1 3 32 32 H 1.08998 * 109.47172 * 59.99961 * 3 2 1 33 33 H 1.09003 * 109.47237 * 299.99546 * 3 2 1 34 34 H 1.08998 * 109.47285 * 60.00030 * 4 3 2 35 35 H 1.08994 * 109.47016 * 299.99971 * 4 3 2 36 36 H 1.08998 * 109.47172 * 59.99961 * 5 4 3 37 37 H 1.09001 * 109.46731 * 299.99462 * 5 4 3 38 38 H 1.09001 * 113.27985 * 16.93185 * 7 6 5 39 39 H 1.09001 * 113.46394 * 24.87726 * 8 7 6 40 40 H 1.08997 * 113.52430 * 254.44296 * 8 7 6 41 41 H 1.08000 * 119.94807 * 0.24742 * 13 12 10 42 42 H 1.08002 * 120.04972 * 179.97438 * 14 13 12 43 43 H 0.96994 * 119.99692 * 179.97438 * 19 18 16 44 44 H 1.08000 * 120.05684 * 179.97438 * 24 15 14 45 45 H 1.08000 * 119.94761 * 179.97438 * 25 24 15 46 46 H 1.09005 * 113.46702 * 141.67591 * 26 9 8 47 47 H 1.08996 * 113.46594 * 272.11517 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8852 0.0000 6 8 5.5089 2.8851 0.0012 7 6 6.0901 4.1906 0.0001 8 6 7.4531 4.2733 0.7013 9 7 7.8949 5.1709 -0.3767 10 6 8.7986 6.1625 -0.5046 11 8 9.5192 6.4527 0.4308 12 6 8.9137 6.8965 -1.7805 13 6 8.2001 6.4601 -2.9033 14 6 8.3076 7.1313 -4.0850 15 6 9.1379 8.2659 -4.1751 16 6 9.2520 8.9642 -5.3959 17 1 9.5289 10.0082 -5.3971 18 6 9.0060 8.3028 -6.6077 19 7 9.0952 7.0009 -6.6711 20 14 8.5506 9.2831 -8.1312 21 1 9.7873 9.7567 -8.8030 22 1 7.7804 8.4206 -9.0629 23 1 7.7219 10.4513 -7.7387 24 6 9.8539 8.7011 -3.0425 25 6 9.7401 8.0235 -1.8651 26 6 6.9119 4.5147 -1.2519 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9328 0.9289 0.8908 36 1 3.7161 3.3995 0.8895 37 1 3.7169 3.3984 -0.8905 38 1 5.3900 4.9741 0.2902 39 1 7.9885 3.3241 0.7225 40 1 7.4114 4.7555 1.6779 41 1 7.5639 5.5902 -2.8333 42 1 7.7572 6.7937 -4.9507 43 1 8.9247 6.5434 -7.5092 44 1 10.4920 9.5701 -3.1069 45 1 10.2889 8.3561 -0.9964 46 1 6.4100 5.2021 -1.9329 47 1 7.3018 3.6305 -1.7562 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340206817.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:49 Heat of formation + Delta-G solvation = -54.568162 kcal Electronic energy + Delta-G solvation = -25270.618284 eV Core-core repulsion = 21611.332311 eV Total energy + Delta-G solvation = -3659.285973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.60471 -39.78498 -38.76142 -37.85829 -36.30850 -35.69677 -32.54393 -32.04201 -31.38150 -29.99174 -27.69507 -27.08470 -26.61038 -23.95039 -22.84478 -22.78108 -22.40138 -21.73891 -20.27684 -19.36896 -18.37250 -17.95917 -17.61747 -17.06773 -16.78925 -16.08173 -15.94764 -15.81798 -15.37657 -15.00061 -14.95015 -14.76034 -14.37289 -14.27064 -13.97336 -13.89549 -13.72605 -13.55785 -13.37006 -13.20181 -12.89307 -12.84936 -12.68142 -12.39779 -12.31550 -12.14924 -11.92878 -11.85793 -11.74922 -11.58015 -11.39022 -11.30218 -11.09913 -10.81838 -10.36624 -9.84611 -9.60097 -9.43101 -8.84922 -6.49287 0.40254 1.12253 1.37232 1.41935 1.54217 1.77752 2.03538 2.16224 2.64316 2.78807 3.22647 3.64472 3.71794 3.89937 3.97949 4.02794 4.18304 4.23082 4.25084 4.32241 4.40639 4.47609 4.49553 4.51596 4.57990 4.60674 4.73275 4.74147 4.82946 4.90724 4.93449 4.96880 5.02498 5.04896 5.14021 5.15736 5.24213 5.26572 5.34573 5.46091 5.52728 5.57215 5.80179 5.93123 5.98330 6.19131 6.21407 6.50523 6.69687 6.73794 6.86412 7.28723 8.12188 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011871 B = 0.002497 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.112391 B =11208.630685 C =13287.976960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.116 4.116 5 C 0.053 3.947 6 O -0.378 6.378 7 C 0.076 3.924 8 C 0.099 3.901 9 N -0.652 5.652 10 C 0.601 3.399 11 O -0.607 6.607 12 C -0.295 4.295 13 C -0.066 4.066 14 C -0.200 4.200 15 C 0.102 3.898 16 C -0.473 4.473 17 H 0.087 0.913 18 C 0.041 3.959 19 N -0.793 5.793 20 Si 0.986 3.014 21 H -0.260 1.260 22 H -0.261 1.261 23 H -0.256 1.256 24 C -0.252 4.252 25 C -0.032 4.032 26 C 0.074 3.926 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.120 0.880 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.135 0.865 42 H 0.110 0.890 43 H 0.299 0.701 44 H 0.106 0.894 45 H 0.102 0.898 46 H 0.093 0.907 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.747 -11.644 6.143 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.153 4.153 5 C -0.023 4.023 6 O -0.296 6.296 7 C 0.017 3.983 8 C -0.023 4.023 9 N -0.388 5.388 10 C 0.399 3.601 11 O -0.491 6.491 12 C -0.299 4.299 13 C -0.085 4.085 14 C -0.219 4.219 15 C 0.099 3.901 16 C -0.499 4.499 17 H 0.105 0.895 18 C -0.180 4.180 19 N -0.416 5.416 20 Si 0.805 3.195 21 H -0.185 1.185 22 H -0.185 1.185 23 H -0.180 1.180 24 C -0.272 4.272 25 C -0.051 4.051 26 C -0.048 4.048 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.138 0.862 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.152 0.848 42 H 0.128 0.872 43 H 0.110 0.890 44 H 0.124 0.876 45 H 0.120 0.880 46 H 0.111 0.889 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.128 -11.743 6.459 20.970 hybrid contribution 0.331 0.566 -0.631 0.910 sum -15.797 -11.177 5.827 20.210 Atomic orbital electron populations 1.21785 0.95452 1.01910 1.01978 1.21521 0.96193 0.96426 1.02163 1.21513 0.93446 0.97512 1.02705 1.21519 0.95903 0.94848 1.03055 1.22838 0.79338 0.98784 1.01383 1.87899 1.21434 1.25912 1.94315 1.23655 0.93362 0.86519 0.94809 1.23263 0.92583 0.93632 0.92820 1.48969 1.38658 1.33945 1.17204 1.17971 0.76814 0.77875 0.87439 1.90616 1.45627 1.69547 1.43349 1.19056 1.13253 1.04009 0.93609 1.21310 0.96731 0.98500 0.91934 1.20912 1.03670 1.00315 0.96992 1.18150 0.87790 0.91232 0.92960 1.20098 1.40280 0.98527 0.91022 0.89452 1.26957 0.91111 0.95825 1.04083 1.69780 1.30404 1.10976 1.30445 0.85151 0.79629 0.79077 0.75599 1.18451 1.18499 1.18007 1.20841 1.07000 1.04944 0.94381 1.20505 0.94689 0.93384 0.96507 1.23815 0.87918 0.97072 0.96035 0.92505 0.92701 0.92463 0.92114 0.91877 0.91262 0.91544 0.91637 0.91322 0.91889 0.92297 0.86213 0.88868 0.89927 0.84761 0.87242 0.88998 0.87597 0.87991 0.88911 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 71.98 0.71 -0.73 16 2 C -0.13 -1.30 5.93 30.60 0.18 -1.12 16 3 C -0.11 -1.22 5.21 30.60 0.16 -1.06 16 4 C -0.12 -1.54 5.58 30.60 0.17 -1.37 16 5 C 0.05 0.79 5.78 71.98 0.42 1.20 16 6 O -0.38 -7.69 10.40 -148.98 -1.55 -9.24 16 7 C 0.08 1.65 4.65 30.84 0.14 1.79 16 8 C 0.10 2.67 8.46 83.18 0.70 3.37 16 9 N -0.65 -22.93 3.68 -863.05 -3.18 -26.11 16 10 C 0.60 27.26 8.00 86.73 0.69 27.95 16 11 O -0.61 -30.98 17.12 -3.98 -0.07 -31.05 16 12 C -0.29 -14.14 5.89 -19.93 -0.12 -14.26 16 13 C -0.07 -3.02 9.12 22.25 0.20 -2.82 16 14 C -0.20 -9.98 8.65 22.47 0.19 -9.79 16 15 C 0.10 5.35 5.56 -21.28 -0.12 5.24 16 16 C -0.47 -23.86 9.02 23.46 0.21 -23.65 16 17 H 0.09 4.22 7.94 -2.91 -0.02 4.19 16 18 C 0.04 1.87 5.03 85.35 0.43 2.30 16 19 N -0.79 -37.93 11.24 21.87 0.25 -37.68 16 20 Si 0.99 34.34 29.61 68.60 2.03 36.38 16 21 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 22 H -0.26 -8.50 7.11 99.48 0.71 -7.80 16 23 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 24 C -0.25 -12.75 9.73 22.47 0.22 -12.54 16 25 C -0.03 -1.57 9.52 22.25 0.21 -1.36 16 26 C 0.07 2.01 6.31 83.09 0.52 2.54 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.12 2.22 7.88 -2.39 -0.02 2.20 16 39 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.14 5.13 3.81 -2.91 -0.01 5.12 16 42 H 0.11 5.48 6.34 -2.91 -0.02 5.46 16 43 H 0.30 12.62 8.29 -92.71 -0.77 11.85 16 44 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 45 H 0.10 4.92 7.65 -2.91 -0.02 4.90 16 46 H 0.09 2.50 6.15 -2.38 -0.01 2.48 16 47 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -63.74 385.84 3.37 -60.37 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: 0.95 Total: 31.64 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 4.94 Total: -24.30 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -2.93 Total: -63.79 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -1.62 Total: -40.29 kcal Atomic # 14 Polarization: 34.34 SS G_CDS: 2.03 Total: 36.38 kcal Total: -63.74 3.37 -60.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340206817.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.806 kcal (2) G-P(sol) polarization free energy of solvation -63.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds