Wall clock time and date at job start Tue Mar 31 2020 11:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47160 * 2 1 4 4 C 1.52995 * 109.47291 * 120.00202 * 2 1 3 5 5 C 1.53005 * 109.47343 * 174.99952 * 4 2 1 6 6 N 1.46891 * 109.47240 * 185.03576 * 5 4 2 7 7 C 1.46903 * 111.00606 * 72.24611 * 6 5 4 8 8 C 1.50706 * 109.46710 * 63.21021 * 7 6 5 9 9 H 1.07994 * 120.00042 * 4.92404 * 8 7 6 10 10 C 1.37877 * 119.99361 * 184.91766 * 8 7 6 11 11 N 1.31522 * 119.99140 * 180.02562 * 10 8 7 12 12 Si 1.86791 * 120.00610 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.46958 * 89.99950 * 12 10 8 14 14 H 1.48497 * 109.47327 * 210.00201 * 12 10 8 15 15 H 1.48499 * 109.47385 * 330.00415 * 12 10 8 16 16 C 1.46903 * 111.00156 * 196.20110 * 6 5 4 17 17 C 1.52997 * 109.47400 * 163.82828 * 16 6 5 18 18 H 1.09002 * 109.29877 * 56.38475 * 17 16 6 19 19 C 1.52588 * 109.38822 * 296.64905 * 17 16 6 20 20 C 1.52586 * 110.61140 * 169.87625 * 19 17 16 21 21 C 1.52963 * 110.02926 * 70.01102 * 20 19 17 22 22 S 1.81669 * 108.97190 * 296.32030 * 21 20 19 23 23 O 1.42107 * 108.66016 * 299.96671 * 22 21 20 24 24 O 1.42099 * 108.66678 * 168.62864 * 22 21 20 25 25 C 1.53033 * 109.38698 * 176.12088 * 17 16 6 26 26 H 1.09004 * 109.46918 * 299.99603 * 1 2 3 27 27 H 1.08993 * 109.47086 * 59.99630 * 1 2 3 28 28 H 1.08997 * 109.47253 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46673 * 239.99904 * 2 1 3 30 30 H 1.09001 * 109.47193 * 300.00320 * 3 2 1 31 31 H 1.09004 * 109.46881 * 60.00374 * 3 2 1 32 32 H 1.08998 * 109.47279 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47096 * 54.99981 * 4 2 1 34 34 H 1.09005 * 109.47026 * 295.00066 * 4 2 1 35 35 H 1.08997 * 109.46938 * 65.02960 * 5 4 2 36 36 H 1.08997 * 109.46588 * 305.03572 * 5 4 2 37 37 H 1.08997 * 109.47270 * 183.21399 * 7 6 5 38 38 H 1.09002 * 109.46936 * 303.21488 * 7 6 5 39 39 H 0.97000 * 119.99152 * 179.97438 * 11 10 8 40 40 H 1.08997 * 109.46928 * 43.83232 * 16 6 5 41 41 H 1.09000 * 109.47249 * 283.83243 * 16 6 5 42 42 H 1.09000 * 109.24064 * 290.15172 * 19 17 16 43 43 H 1.08997 * 109.24283 * 49.59174 * 19 17 16 44 44 H 1.09007 * 109.38325 * 190.12628 * 20 19 17 45 45 H 1.09002 * 109.38357 * 309.80188 * 20 19 17 46 46 H 1.08988 * 109.56415 * 176.46849 * 21 20 19 47 47 H 1.08999 * 109.64292 * 56.20977 * 21 20 19 48 48 H 1.09008 * 109.54990 * 303.66383 * 25 17 16 49 49 H 1.08998 * 109.54887 * 63.85445 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1879 6 7 4.0446 -1.6277 2.3250 7 6 3.7157 -3.0485 2.1487 8 6 4.4300 -3.5823 0.9337 9 1 5.1260 -2.9545 0.3973 10 6 4.1948 -4.8722 0.5072 11 7 4.8186 -5.3381 -0.5528 12 14 2.9905 -5.9578 1.4347 13 1 1.6297 -5.7861 0.8655 14 1 3.4048 -7.3781 1.3072 15 1 2.9795 -5.5722 2.8687 16 6 5.4880 -1.4425 2.5260 17 6 5.8772 -1.9419 3.9188 18 1 5.5714 -2.9825 4.0269 19 6 5.1738 -1.0951 4.9755 20 6 5.3389 -1.7166 6.3592 21 6 6.7907 -1.5853 6.8227 22 16 7.8570 -2.5375 5.7016 23 8 7.4541 -3.8997 5.7386 24 8 9.2119 -2.2040 5.9701 25 6 7.3944 -1.8379 4.0901 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6054 -1.7198 1.2951 34 1 1.7517 -0.1583 2.1369 35 1 4.0030 0.1660 1.2321 36 1 3.8571 -1.3153 0.2561 37 1 4.0312 -3.6066 3.0301 38 1 2.6395 -3.1584 2.0149 39 1 4.6534 -6.2457 -0.8527 40 1 5.7343 -0.3844 2.4375 41 1 6.0353 -2.0073 1.7714 42 1 5.6041 -0.0936 4.9779 43 1 4.1127 -1.0295 4.7353 44 1 4.6866 -1.2039 7.0662 45 1 5.0662 -2.7711 6.3169 46 1 6.8869 -1.9748 7.8361 47 1 7.0875 -0.5367 6.8052 48 1 7.8902 -2.3947 3.2949 49 1 7.6956 -0.7914 4.0452 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341885101.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:55 Heat of formation + Delta-G solvation = -94.576336 kcal Electronic energy + Delta-G solvation = -26333.032222 eV Core-core repulsion = 22807.455316 eV Total energy + Delta-G solvation = -3525.576906 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -38.50110 -37.09546 -36.59138 -35.92512 -35.14848 -32.56086 -32.00942 -28.89852 -27.88771 -27.26417 -26.97351 -24.79107 -23.08468 -22.23045 -20.64550 -19.53835 -19.21784 -18.72756 -17.00676 -16.52887 -16.38291 -15.61082 -15.33931 -15.06462 -14.70738 -14.45939 -14.27806 -13.96077 -13.64667 -13.52461 -13.13401 -12.89684 -12.81473 -12.51492 -12.25358 -12.08693 -11.98247 -11.92236 -11.74966 -11.68727 -11.33995 -11.28906 -11.22065 -11.08261 -10.84930 -10.77159 -10.58412 -10.42535 -10.36252 -10.33733 -10.24942 -9.99093 -9.75684 -9.67549 -9.51071 -8.59627 -7.25395 -6.12808 -4.12143 0.10142 2.73342 3.26678 3.35849 3.38987 3.71442 3.98155 4.38440 4.51531 4.57030 4.70432 4.82984 4.97763 5.05825 5.17903 5.20449 5.22275 5.24072 5.34133 5.43192 5.57862 5.67797 5.73035 5.76082 5.79609 5.92251 5.93654 5.97140 6.04350 6.09257 6.11047 6.15633 6.22822 6.32838 6.47861 6.49332 6.55587 6.58657 6.66851 6.76441 6.89915 6.91529 7.11796 7.54825 7.99287 8.05322 8.41144 8.88542 9.50603 11.00009 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.004681 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.309793 B = 5980.246487 C = 7602.920784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.144 4.144 4 C -0.103 4.103 5 C 0.058 3.942 6 N -0.534 5.534 7 C 0.148 3.852 8 C -0.549 4.549 9 H 0.075 0.925 10 C 0.074 3.926 11 N -0.898 5.898 12 Si 0.874 3.126 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.262 1.262 16 C 0.068 3.932 17 C -0.072 4.072 18 H 0.097 0.903 19 C -0.128 4.128 20 C -0.111 4.111 21 C -0.603 4.603 22 S 2.411 3.589 23 O -0.934 6.934 24 O -0.954 6.954 25 C -0.592 4.592 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.029 0.971 38 H 0.027 0.973 39 H 0.263 0.737 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.102 0.898 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.127 0.873 47 H 0.129 0.871 48 H 0.137 0.863 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.862 12.792 9.982 16.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.201 4.201 4 C -0.141 4.141 5 C -0.070 4.070 6 N -0.257 5.257 7 C 0.022 3.978 8 C -0.588 4.588 9 H 0.093 0.907 10 C -0.129 4.129 11 N -0.536 5.536 12 Si 0.701 3.299 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.187 1.187 16 C -0.061 4.061 17 C -0.091 4.091 18 H 0.115 0.885 19 C -0.166 4.166 20 C -0.149 4.149 21 C -0.732 4.732 22 S 2.595 3.405 23 O -0.931 6.931 24 O -0.951 6.951 25 C -0.722 4.722 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.047 0.953 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.121 0.879 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.145 0.855 47 H 0.147 0.853 48 H 0.155 0.845 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.441 12.127 10.522 16.120 hybrid contribution -0.576 -0.398 -0.609 0.928 sum -2.017 11.729 9.913 15.489 Atomic orbital electron populations 1.21815 0.95849 1.01555 1.00934 1.21111 0.95134 0.96034 0.99447 1.21854 1.01182 0.96270 1.00833 1.21535 0.95936 1.00424 0.96225 1.22015 0.94583 0.96036 0.94342 1.62380 1.12748 1.10587 1.39953 1.20259 0.96394 0.84650 0.96528 1.21608 1.26416 0.98977 1.11788 0.90746 1.24940 0.95589 0.97849 0.94503 1.69922 1.42540 1.16891 1.24248 0.86868 0.81607 0.80109 0.81320 1.20284 1.21286 1.18655 1.21929 0.90468 0.99103 0.94639 1.20865 0.88162 1.02570 0.97520 0.88453 1.21708 1.04586 0.98487 0.91797 1.21314 0.91913 1.03572 0.98114 1.30208 1.11896 1.15310 1.15775 1.08127 0.75894 0.77009 0.79468 1.93608 1.83711 1.30038 1.85781 1.93565 1.31809 1.85633 1.84143 1.30254 1.06857 1.13263 1.21866 0.93084 0.93308 0.92761 0.91138 0.93503 0.93101 0.92555 0.91636 0.92491 0.92989 0.92898 0.95267 0.95478 0.92684 0.92624 0.92270 0.91722 0.87935 0.90034 0.89807 0.85462 0.85289 0.84489 0.85300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.19 37.16 0.34 -1.39 16 2 C -0.10 -1.33 2.92 -90.62 -0.26 -1.60 16 3 C -0.14 -1.68 8.95 37.16 0.33 -1.35 16 4 C -0.10 -1.60 4.82 -26.73 -0.13 -1.73 16 5 C 0.06 1.00 4.45 -3.83 -0.02 0.98 16 6 N -0.53 -9.63 3.82 -236.07 -0.90 -10.53 16 7 C 0.15 3.27 3.91 -4.97 -0.02 3.25 16 8 C -0.55 -14.40 7.79 -34.44 -0.27 -14.67 16 9 H 0.07 2.12 6.26 -52.49 -0.33 1.79 16 10 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 11 N -0.90 -26.76 13.96 55.43 0.77 -25.99 16 12 Si 0.87 21.12 27.37 -169.99 -4.65 16.47 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.26 -6.09 6.69 56.52 0.38 -5.71 16 16 C 0.07 1.12 4.20 -3.82 -0.02 1.11 16 17 C -0.07 -1.02 2.02 -90.82 -0.18 -1.20 16 18 H 0.10 1.63 6.49 -51.93 -0.34 1.29 16 19 C -0.13 -1.45 4.91 -27.15 -0.13 -1.58 16 20 C -0.11 -1.10 5.72 -26.96 -0.15 -1.26 16 21 C -0.60 -5.35 6.35 37.14 0.24 -5.11 16 22 S 2.41 29.98 5.31 -107.50 -0.57 29.41 16 23 O -0.93 -15.62 17.94 -57.81 -1.04 -16.66 16 24 O -0.95 -14.44 18.10 -57.81 -1.05 -15.48 16 25 C -0.59 -7.05 5.62 37.17 0.21 -6.84 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.67 6.68 -51.93 -0.35 0.33 16 33 H 0.06 1.15 6.55 -51.93 -0.34 0.81 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.79 6.39 -51.93 -0.33 0.46 16 36 H 0.05 1.08 6.50 -51.93 -0.34 0.75 16 37 H 0.03 0.66 6.02 -51.93 -0.31 0.35 16 38 H 0.03 0.61 5.68 -51.93 -0.29 0.32 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.06 0.79 7.72 -51.93 -0.40 0.39 16 41 H 0.06 1.17 6.13 -51.93 -0.32 0.85 16 42 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 43 H 0.10 1.28 7.40 -51.93 -0.38 0.89 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.08 0.93 8.01 -51.93 -0.42 0.51 16 46 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.14 1.71 8.14 -51.92 -0.42 1.29 16 49 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 377.65 15.07 5.69 5.69 Total: -1.00 -33.34 377.65 -10.71 -44.05 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -8.80 Total: 2.46 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: -0.16 Total: -29.42 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: -0.13 Total: -36.52 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -2.08 Total: -32.14 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.65 Total: 16.47 kcal Atomic # 16 Polarization: 29.98 SS G_CDS: -0.57 Total: 29.41 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.34 -10.71 -44.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341885101.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.527 kcal (2) G-P(sol) polarization free energy of solvation -33.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds