Wall clock time and date at job start Tue Mar 31 2020 11:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47160 * 2 1 4 4 C 1.52995 * 109.47291 * 120.00202 * 2 1 3 5 5 C 1.53005 * 109.47343 * 174.99952 * 4 2 1 6 6 N 1.46891 * 109.47240 * 185.03576 * 5 4 2 7 7 C 1.46903 * 111.00606 * 72.24611 * 6 5 4 8 8 C 1.50706 * 109.46710 * 63.21021 * 7 6 5 9 9 H 1.07994 * 120.00042 * 4.92404 * 8 7 6 10 10 C 1.37877 * 119.99361 * 184.91766 * 8 7 6 11 11 N 1.31522 * 119.99140 * 180.02562 * 10 8 7 12 12 Si 1.86791 * 120.00610 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.46958 * 89.99950 * 12 10 8 14 14 H 1.48497 * 109.47327 * 210.00201 * 12 10 8 15 15 H 1.48499 * 109.47385 * 330.00415 * 12 10 8 16 16 C 1.46903 * 111.00156 * 196.20110 * 6 5 4 17 17 C 1.52997 * 109.47400 * 163.82828 * 16 6 5 18 18 H 1.09002 * 109.29877 * 56.38475 * 17 16 6 19 19 C 1.52588 * 109.38822 * 296.64905 * 17 16 6 20 20 C 1.52586 * 110.61140 * 169.87625 * 19 17 16 21 21 C 1.52963 * 110.02926 * 70.01102 * 20 19 17 22 22 S 1.81669 * 108.97190 * 296.32030 * 21 20 19 23 23 O 1.42107 * 108.66016 * 299.96671 * 22 21 20 24 24 O 1.42099 * 108.66678 * 168.62864 * 22 21 20 25 25 C 1.53033 * 109.38698 * 176.12088 * 17 16 6 26 26 H 1.09004 * 109.46918 * 299.99603 * 1 2 3 27 27 H 1.08993 * 109.47086 * 59.99630 * 1 2 3 28 28 H 1.08997 * 109.47253 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46673 * 239.99904 * 2 1 3 30 30 H 1.09001 * 109.47193 * 300.00320 * 3 2 1 31 31 H 1.09004 * 109.46881 * 60.00374 * 3 2 1 32 32 H 1.08998 * 109.47279 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47096 * 54.99981 * 4 2 1 34 34 H 1.09005 * 109.47026 * 295.00066 * 4 2 1 35 35 H 1.08997 * 109.46938 * 65.02960 * 5 4 2 36 36 H 1.08997 * 109.46588 * 305.03572 * 5 4 2 37 37 H 1.08997 * 109.47270 * 183.21399 * 7 6 5 38 38 H 1.09002 * 109.46936 * 303.21488 * 7 6 5 39 39 H 0.97000 * 119.99152 * 179.97438 * 11 10 8 40 40 H 1.08997 * 109.46928 * 43.83232 * 16 6 5 41 41 H 1.09000 * 109.47249 * 283.83243 * 16 6 5 42 42 H 1.09000 * 109.24064 * 290.15172 * 19 17 16 43 43 H 1.08997 * 109.24283 * 49.59174 * 19 17 16 44 44 H 1.09007 * 109.38325 * 190.12628 * 20 19 17 45 45 H 1.09002 * 109.38357 * 309.80188 * 20 19 17 46 46 H 1.08988 * 109.56415 * 176.46849 * 21 20 19 47 47 H 1.08999 * 109.64292 * 56.20977 * 21 20 19 48 48 H 1.09008 * 109.54990 * 303.66383 * 25 17 16 49 49 H 1.08998 * 109.54887 * 63.85445 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1879 6 7 4.0446 -1.6277 2.3250 7 6 3.7157 -3.0485 2.1487 8 6 4.4300 -3.5823 0.9337 9 1 5.1260 -2.9545 0.3973 10 6 4.1948 -4.8722 0.5072 11 7 4.8186 -5.3381 -0.5528 12 14 2.9905 -5.9578 1.4347 13 1 1.6297 -5.7861 0.8655 14 1 3.4048 -7.3781 1.3072 15 1 2.9795 -5.5722 2.8687 16 6 5.4880 -1.4425 2.5260 17 6 5.8772 -1.9419 3.9188 18 1 5.5714 -2.9825 4.0269 19 6 5.1738 -1.0951 4.9755 20 6 5.3389 -1.7166 6.3592 21 6 6.7907 -1.5853 6.8227 22 16 7.8570 -2.5375 5.7016 23 8 7.4541 -3.8997 5.7386 24 8 9.2119 -2.2040 5.9701 25 6 7.3944 -1.8379 4.0901 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6054 -1.7198 1.2951 34 1 1.7517 -0.1583 2.1369 35 1 4.0030 0.1660 1.2321 36 1 3.8571 -1.3153 0.2561 37 1 4.0312 -3.6066 3.0301 38 1 2.6395 -3.1584 2.0149 39 1 4.6534 -6.2457 -0.8527 40 1 5.7343 -0.3844 2.4375 41 1 6.0353 -2.0073 1.7714 42 1 5.6041 -0.0936 4.9779 43 1 4.1127 -1.0295 4.7353 44 1 4.6866 -1.2039 7.0662 45 1 5.0662 -2.7711 6.3169 46 1 6.8869 -1.9748 7.8361 47 1 7.0875 -0.5367 6.8052 48 1 7.8902 -2.3947 3.2949 49 1 7.6956 -0.7914 4.0452 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341885101.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:54 Heat of formation + Delta-G solvation = -118.398739 kcal Electronic energy + Delta-G solvation = -26334.065239 eV Core-core repulsion = 22807.455316 eV Total energy + Delta-G solvation = -3526.609923 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.80670 -38.22876 -37.67813 -37.03754 -36.38648 -34.49246 -33.14440 -30.39222 -29.35741 -28.27346 -27.93061 -26.13009 -24.77086 -23.20167 -21.84973 -20.73025 -20.66931 -19.73996 -18.98134 -17.60384 -17.43167 -16.72699 -16.61674 -16.42646 -16.16411 -15.81167 -15.51145 -15.15020 -14.91025 -14.56582 -14.40665 -14.22905 -13.93570 -13.74256 -13.46515 -13.27314 -13.22291 -13.05562 -13.00900 -12.92487 -12.81851 -12.50667 -12.37077 -12.24759 -12.18999 -12.12499 -11.88071 -11.83133 -11.69889 -11.56971 -11.44500 -11.38999 -11.17764 -11.12654 -10.79369 -10.72693 -8.90543 -8.31423 -6.33207 -0.86001 1.30763 1.34707 1.44512 1.80719 2.32285 2.76174 3.00703 3.05449 3.32044 3.71712 3.78608 3.92088 3.93863 4.08694 4.11927 4.17222 4.21205 4.29060 4.52183 4.56326 4.59931 4.73173 4.77104 4.82401 4.86599 4.87992 4.89174 4.97153 5.02640 5.08516 5.09826 5.13038 5.17318 5.20937 5.25357 5.28779 5.32739 5.44856 5.49341 5.53624 5.60241 5.60590 5.66137 6.12819 6.38151 6.52401 6.74126 7.32754 8.84784 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.004681 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.309793 B = 5980.246487 C = 7602.920784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 C -0.139 4.139 4 C -0.096 4.096 5 C 0.061 3.939 6 N -0.518 5.518 7 C 0.158 3.842 8 C -0.537 4.537 9 H 0.038 0.962 10 C 0.011 3.989 11 N -0.948 5.948 12 Si 0.933 3.067 13 H -0.265 1.265 14 H -0.290 1.290 15 H -0.245 1.245 16 C 0.066 3.934 17 C -0.072 4.072 18 H 0.061 0.939 19 C -0.125 4.125 20 C -0.113 4.113 21 C -0.570 4.570 22 S 2.407 3.593 23 O -0.990 6.990 24 O -0.986 6.986 25 C -0.591 4.591 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.009 0.991 37 H 0.027 0.973 38 H 0.029 0.971 39 H 0.263 0.737 40 H 0.088 0.912 41 H 0.014 0.986 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.114 0.886 45 H 0.064 0.936 46 H 0.151 0.849 47 H 0.170 0.830 48 H 0.118 0.882 49 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.534 16.090 12.938 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 C -0.196 4.196 4 C -0.134 4.134 5 C -0.067 4.067 6 N -0.240 5.240 7 C 0.030 3.970 8 C -0.576 4.576 9 H 0.056 0.944 10 C -0.187 4.187 11 N -0.589 5.589 12 Si 0.757 3.243 13 H -0.190 1.190 14 H -0.216 1.216 15 H -0.168 1.168 16 C -0.063 4.063 17 C -0.092 4.092 18 H 0.079 0.921 19 C -0.162 4.162 20 C -0.152 4.152 21 C -0.704 4.704 22 S 2.596 3.404 23 O -0.987 6.987 24 O -0.983 6.983 25 C -0.721 4.721 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.027 0.973 37 H 0.045 0.955 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.033 0.967 42 H 0.118 0.882 43 H 0.112 0.888 44 H 0.133 0.867 45 H 0.083 0.917 46 H 0.169 0.831 47 H 0.187 0.813 48 H 0.137 0.863 49 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.091 15.419 13.465 20.703 hybrid contribution -0.012 -1.299 -1.573 2.040 sum -3.103 14.120 11.892 18.719 Atomic orbital electron populations 1.21783 0.94337 1.01292 1.02394 1.21097 0.96439 0.97019 0.97277 1.21803 1.00792 0.94732 1.02260 1.21484 0.94184 0.99596 0.98154 1.22065 0.96235 0.96570 0.91867 1.62439 1.13821 1.07993 1.39711 1.20055 0.95706 0.87078 0.94128 1.21905 1.25025 0.98309 1.12377 0.94388 1.25822 0.97713 0.99635 0.95483 1.70074 1.44995 1.17378 1.26491 0.85904 0.79614 0.77837 0.80903 1.19021 1.21566 1.16844 1.22025 0.88800 1.00420 0.95086 1.20816 0.89926 1.01234 0.97260 0.92075 1.21700 1.03750 0.99512 0.91215 1.21362 0.92922 1.02881 0.98017 1.29972 1.09331 1.16423 1.14648 1.07968 0.75876 0.76523 0.80020 1.93537 1.84382 1.34157 1.86668 1.93519 1.34381 1.85848 1.84581 1.30216 1.05143 1.15445 1.21321 0.91478 0.91981 0.93933 0.93779 0.92327 0.91439 0.93118 0.94274 0.90341 0.90221 0.97302 0.95472 0.95309 0.92820 0.89387 0.96722 0.88184 0.88810 0.86725 0.91691 0.83121 0.81256 0.86347 0.81405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.19 71.98 0.66 -2.46 16 2 C -0.10 -2.59 2.92 -10.80 -0.03 -2.62 16 3 C -0.14 -2.89 8.95 71.98 0.64 -2.24 16 4 C -0.10 -2.88 4.82 30.59 0.15 -2.73 16 5 C 0.06 2.07 4.45 86.31 0.38 2.46 16 6 N -0.52 -18.56 3.82 -900.80 -3.44 -22.00 16 7 C 0.16 7.12 3.91 85.56 0.33 7.46 16 8 C -0.54 -29.74 7.79 25.60 0.20 -29.54 16 9 H 0.04 2.34 6.26 -2.91 -0.02 2.32 16 10 C 0.01 0.65 5.47 84.65 0.46 1.11 16 11 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 12 Si 0.93 44.65 27.37 68.60 1.88 46.52 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 14 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 15 H -0.25 -10.94 6.69 99.48 0.67 -10.27 16 16 C 0.07 2.17 4.20 86.30 0.36 2.54 16 17 C -0.07 -2.00 2.02 -10.92 -0.02 -2.03 16 18 H 0.06 2.12 6.49 -2.39 -0.02 2.11 16 19 C -0.12 -2.34 4.91 30.32 0.15 -2.19 16 20 C -0.11 -1.78 5.72 30.44 0.17 -1.61 16 21 C -0.57 -7.54 6.35 71.97 0.46 -7.08 16 22 S 2.41 57.92 5.31 -56.49 -0.30 57.62 16 23 O -0.99 -34.34 17.94 -127.40 -2.29 -36.62 16 24 O -0.99 -29.14 18.10 -127.40 -2.31 -31.45 16 25 C -0.59 -13.66 5.62 71.99 0.40 -13.25 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.10 6.68 -2.39 -0.02 1.08 16 33 H 0.04 1.37 6.55 -2.39 -0.02 1.35 16 34 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.08 2.28 6.39 -2.39 -0.02 2.26 16 36 H 0.01 0.37 6.50 -2.39 -0.02 0.36 16 37 H 0.03 1.25 6.02 -2.39 -0.01 1.24 16 38 H 0.03 1.30 5.68 -2.39 -0.01 1.29 16 39 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 40 H 0.09 2.32 7.72 -2.39 -0.02 2.30 16 41 H 0.01 0.61 6.13 -2.39 -0.01 0.59 16 42 H 0.10 1.22 8.09 -2.39 -0.02 1.20 16 43 H 0.09 1.99 7.40 -2.39 -0.02 1.97 16 44 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 45 H 0.06 1.31 8.01 -2.39 -0.02 1.29 16 46 H 0.15 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.17 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.12 3.17 8.14 -2.38 -0.02 3.15 16 49 H 0.17 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -78.87 377.65 -0.96 -79.83 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.86 Total: 17.65 kcal Atomic # 6 Polarization: -56.53 SS G_CDS: 4.33 Total: -52.21 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -3.14 Total: -81.35 kcal Atomic # 8 Polarization: -63.48 SS G_CDS: -4.59 Total: -68.07 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.52 kcal Atomic # 16 Polarization: 57.92 SS G_CDS: -0.30 Total: 57.62 kcal Total: -78.87 -0.96 -79.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341885101.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.566 kcal (2) G-P(sol) polarization free energy of solvation -78.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds