Wall clock time and date at job start Tue Mar 31 2020 11:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35973 * 117.00078 * 2 1 4 4 C 1.39192 * 119.92396 * 0.02562 * 3 2 1 5 5 C 1.37778 * 120.64062 * 179.97438 * 4 3 2 6 6 C 1.38921 * 120.03495 * 0.23789 * 5 4 3 7 7 O 1.34923 * 133.34193 * 179.73843 * 6 5 4 8 8 C 1.34426 * 110.88838 * 179.97438 * 7 6 5 9 9 C 1.50700 * 124.92324 * 180.02562 * 8 7 6 10 10 N 1.46905 * 109.47042 * 269.97727 * 9 8 7 11 11 C 1.46905 * 110.99574 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.46749 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47047 * 300.00444 * 12 11 10 14 14 C 1.53002 * 109.47005 * 60.00337 * 12 11 10 15 15 C 1.52997 * 109.47085 * 180.02562 * 12 11 10 16 16 C 1.50700 * 109.47122 * 180.02562 * 15 12 11 17 17 H 1.07996 * 119.99901 * 0.02562 * 16 15 12 18 18 C 1.37877 * 119.99924 * 180.02562 * 16 15 12 19 19 N 1.31512 * 120.00165 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99661 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46880 * 90.00477 * 20 18 16 22 22 H 1.48502 * 109.47055 * 209.99888 * 20 18 16 23 23 H 1.48496 * 109.47479 * 330.00479 * 20 18 16 24 24 C 1.34004 * 110.15195 * 359.47002 * 8 7 6 25 25 C 1.40456 * 119.40953 * 359.49694 * 6 5 4 26 26 C 1.38168 * 119.92213 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47374 * 59.99431 * 1 2 3 28 28 H 1.08997 * 109.47538 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47023 * 299.99665 * 1 2 3 30 30 H 1.07999 * 119.67650 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.97971 * 179.97438 * 5 4 3 32 32 H 1.09007 * 109.46880 * 29.97323 * 9 8 7 33 33 H 1.08995 * 109.47462 * 149.97639 * 9 8 7 34 34 H 1.00896 * 110.99885 * 56.04757 * 10 9 8 35 35 H 1.08993 * 109.47529 * 300.00166 * 11 10 9 36 36 H 1.09000 * 109.47158 * 60.00357 * 11 10 9 37 37 H 1.08999 * 109.47467 * 59.99944 * 13 12 11 38 38 H 1.09005 * 109.46991 * 179.97438 * 13 12 11 39 39 H 1.09000 * 109.47207 * 299.99688 * 13 12 11 40 40 H 1.08993 * 109.46981 * 59.99846 * 14 12 11 41 41 H 1.08995 * 109.47096 * 179.97438 * 14 12 11 42 42 H 1.08999 * 109.47049 * 299.99774 * 14 12 11 43 43 H 1.08993 * 109.47270 * 300.00379 * 15 12 11 44 44 H 1.09000 * 109.47081 * 60.00365 * 15 12 11 45 45 H 0.97001 * 119.99931 * 179.97438 * 19 18 16 46 46 H 1.08004 * 126.89809 * 179.90116 * 24 8 7 47 47 H 1.08002 * 120.22570 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2867 2.3779 0.0005 5 6 1.8968 3.6132 0.0011 6 6 3.2830 3.7041 -0.0039 7 8 4.1429 4.7438 -0.0092 8 6 5.4161 4.3128 -0.0121 9 6 6.6295 5.2065 -0.0176 10 7 7.0200 5.4935 -1.4044 11 6 8.2019 6.3649 -1.4489 12 6 8.5778 6.6403 -2.9062 13 6 8.8915 5.3188 -3.6105 14 6 7.4090 7.3299 -3.6128 15 6 9.8092 7.5472 -2.9526 16 6 10.1791 7.8190 -4.3880 17 1 9.5941 7.3884 -5.1872 18 6 11.2642 8.6175 -4.6809 19 7 11.9768 9.1416 -3.7077 20 14 11.7231 8.9538 -6.4602 21 1 11.0148 10.1706 -6.9325 22 1 13.1896 9.1640 -6.5619 23 1 11.3297 7.7945 -7.3005 24 6 5.4501 2.9733 0.0029 25 6 4.0513 2.5283 0.0013 26 6 3.4262 1.2819 0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2086 2.3139 0.0005 31 1 1.2970 4.5114 0.0011 32 1 6.3956 6.1399 0.4946 33 1 7.4513 4.7068 0.4952 34 1 6.2529 5.8987 -1.9195 35 1 7.9786 7.3061 -0.9467 36 1 9.0347 5.8734 -0.9459 37 1 8.0146 4.6723 -3.5774 38 1 9.1589 5.5150 -4.6489 39 1 9.7242 4.8275 -3.1071 40 1 7.1855 8.2713 -3.1111 41 1 7.6770 7.5265 -4.6509 42 1 6.5321 6.6834 -3.5798 43 1 9.5861 8.4887 -2.4507 44 1 10.6417 7.0556 -2.4494 45 1 12.7405 9.7031 -3.9138 46 1 6.3300 2.3469 0.0031 47 1 4.0167 0.3777 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342294404.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:03 Heat of formation + Delta-G solvation = -20.542167 kcal Electronic energy + Delta-G solvation = -25506.459196 eV Core-core repulsion = 21848.648701 eV Total energy + Delta-G solvation = -3657.810495 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.57121 -39.94217 -37.77683 -36.74290 -34.74224 -32.90392 -32.15698 -30.48698 -29.71160 -27.48785 -27.08752 -26.36646 -26.22897 -24.42390 -22.95993 -22.21355 -21.79252 -21.07952 -18.36970 -17.99947 -17.66448 -16.52497 -16.41388 -16.21802 -15.96549 -15.63440 -15.38152 -14.76043 -14.45255 -14.14768 -13.78654 -13.71276 -13.44747 -13.08588 -12.94958 -12.75619 -12.67788 -12.53758 -12.31612 -12.13701 -11.98248 -11.66391 -11.18258 -11.05293 -10.96511 -10.87761 -10.77928 -10.49814 -10.35236 -10.26114 -10.13538 -9.70070 -9.05909 -8.85523 -8.46283 -8.31689 -8.22773 -8.19793 -5.96301 -3.96330 0.61659 1.15264 2.18846 2.52749 2.91142 3.33630 3.40350 3.42938 3.43470 4.19273 4.39458 4.46623 4.55353 4.57067 4.74674 4.75499 4.77664 4.98207 5.06542 5.07035 5.25558 5.28827 5.39598 5.48083 5.61294 5.64572 5.71942 5.81108 5.92308 5.96130 6.01483 6.16623 6.19947 6.29064 6.29468 6.48187 6.65476 6.76356 6.82749 6.93474 7.09726 7.11469 7.19506 7.25330 7.32114 7.52552 7.69684 7.84315 8.03831 8.48121 9.08901 9.66497 11.15294 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031381 B = 0.002002 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.044885 B =13981.135803 C =14203.956209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.108 3.892 4 C -0.180 4.180 5 C -0.066 4.066 6 C 0.021 3.979 7 O -0.194 6.194 8 C 0.054 3.946 9 C 0.130 3.870 10 N -0.682 5.682 11 C 0.069 3.931 12 C -0.058 4.058 13 C -0.117 4.117 14 C -0.130 4.130 15 C 0.034 3.966 16 C -0.507 4.507 17 H 0.059 0.941 18 C 0.054 3.946 19 N -0.897 5.897 20 Si 0.888 3.112 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.274 1.274 24 C -0.194 4.194 25 C -0.088 4.088 26 C -0.110 4.110 27 H 0.055 0.945 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.049 0.951 33 H 0.106 0.894 34 H 0.344 0.656 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.055 0.945 39 H 0.040 0.960 40 H 0.041 0.959 41 H 0.065 0.935 42 H 0.033 0.967 43 H 0.013 0.987 44 H 0.016 0.984 45 H 0.259 0.741 46 H 0.161 0.839 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.306 -15.051 10.576 28.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.063 3.937 4 C -0.198 4.198 5 C -0.084 4.084 6 C -0.027 4.027 7 O -0.096 6.096 8 C 0.006 3.994 9 C 0.001 3.999 10 N -0.314 5.314 11 C -0.059 4.059 12 C -0.059 4.059 13 C -0.174 4.174 14 C -0.188 4.188 15 C -0.004 4.004 16 C -0.545 4.545 17 H 0.077 0.923 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.716 3.284 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.199 1.199 24 C -0.214 4.214 25 C -0.089 4.089 26 C -0.129 4.129 27 H 0.074 0.926 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.156 0.844 31 H 0.152 0.848 32 H 0.067 0.933 33 H 0.124 0.876 34 H 0.163 0.837 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.052 0.948 43 H 0.031 0.969 44 H 0.034 0.966 45 H 0.068 0.932 46 H 0.178 0.822 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -21.786 -15.425 10.541 28.700 hybrid contribution -0.251 1.171 -0.687 1.381 sum -22.038 -14.253 9.854 28.034 Atomic orbital electron populations 1.23060 0.78392 1.04008 1.01345 1.86085 1.21308 1.26474 1.89206 1.18656 0.91831 0.84224 0.98969 1.20959 1.00076 0.90994 1.07808 1.19655 0.89125 0.98170 1.01497 1.19477 0.91722 0.85133 1.06322 1.83973 1.14967 1.34030 1.76620 1.22388 0.82997 0.94108 0.99912 1.20539 0.90041 0.96535 0.92769 1.60681 1.09448 1.51222 1.10086 1.22182 0.91352 0.93307 0.99067 1.20641 0.97426 0.96710 0.91080 1.21612 0.99537 0.95720 1.00575 1.21784 0.96366 0.98531 1.02103 1.19125 0.90652 0.93412 0.97171 1.21233 1.11839 1.29097 0.92361 0.92276 1.25018 0.96583 0.96203 0.96832 1.69963 1.18811 1.33723 1.31218 0.86657 0.77519 0.78569 0.85630 1.20849 1.21378 1.19911 1.22190 0.95330 0.93844 1.10069 1.19667 0.93524 0.92896 1.02783 1.19591 0.91144 0.96789 1.05374 0.92596 0.88202 0.92650 0.84382 0.84755 0.93280 0.87578 0.83651 0.95372 0.91090 0.93869 0.92618 0.94065 0.94015 0.91605 0.94819 0.96866 0.96580 0.93170 0.82151 0.84652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.94 10.49 -19.66 -0.21 -3.15 16 3 C 0.11 1.11 6.68 -39.25 -0.26 0.84 16 4 C -0.18 -1.59 9.01 -39.40 -0.36 -1.94 16 5 C -0.07 -0.66 10.05 -39.50 -0.40 -1.06 16 6 C 0.02 0.26 7.41 -38.49 -0.29 -0.03 16 7 O -0.19 -2.61 10.59 3.65 0.04 -2.57 16 8 C 0.05 0.68 6.74 -35.80 -0.24 0.44 16 9 C 0.13 1.55 6.19 -4.97 -0.03 1.51 16 10 N -0.68 -9.66 5.70 -115.05 -0.66 -10.31 16 11 C 0.07 1.13 4.65 -3.82 -0.02 1.12 16 12 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 13 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 14 C -0.13 -2.42 7.89 37.16 0.29 -2.12 16 15 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 16 C -0.51 -13.78 7.65 -34.44 -0.26 -14.04 16 17 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 18 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 19 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 20 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.19 -2.35 11.01 -37.62 -0.41 -2.77 16 25 C -0.09 -1.09 6.39 -105.16 -0.67 -1.76 16 26 C -0.11 -1.24 10.03 -39.16 -0.39 -1.63 16 27 H 0.06 0.23 7.65 -51.93 -0.40 -0.17 16 28 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.22 7.65 -51.93 -0.40 -0.18 16 30 H 0.14 0.80 6.26 -52.49 -0.33 0.47 16 31 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.34 4.94 6.76 -39.29 -0.27 4.67 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 38 H 0.05 1.15 6.62 -51.93 -0.34 0.81 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 42 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 43 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.16 1.66 8.06 -52.48 -0.42 1.24 16 47 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 379.78 15.07 5.72 5.72 Total: -1.00 -31.08 379.78 -8.76 -39.84 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -7.32 Total: 1.20 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -2.05 Total: -21.33 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.08 Total: -36.26 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.17 Total: -5.71 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.08 -8.76 -39.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342294404.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.294 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds