Wall clock time and date at job start Tue Mar 31 2020 11:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35973 * 117.00078 * 2 1 4 4 C 1.39192 * 119.92396 * 0.02562 * 3 2 1 5 5 C 1.37778 * 120.64062 * 179.97438 * 4 3 2 6 6 C 1.38921 * 120.03495 * 0.23789 * 5 4 3 7 7 O 1.34923 * 133.34193 * 179.73843 * 6 5 4 8 8 C 1.34426 * 110.88838 * 179.97438 * 7 6 5 9 9 C 1.50700 * 124.92324 * 180.02562 * 8 7 6 10 10 N 1.46905 * 109.47042 * 269.97727 * 9 8 7 11 11 C 1.46905 * 110.99574 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.46749 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47047 * 300.00444 * 12 11 10 14 14 C 1.53002 * 109.47005 * 60.00337 * 12 11 10 15 15 C 1.52997 * 109.47085 * 180.02562 * 12 11 10 16 16 C 1.50700 * 109.47122 * 180.02562 * 15 12 11 17 17 H 1.07996 * 119.99901 * 0.02562 * 16 15 12 18 18 C 1.37877 * 119.99924 * 180.02562 * 16 15 12 19 19 N 1.31512 * 120.00165 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99661 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46880 * 90.00477 * 20 18 16 22 22 H 1.48502 * 109.47055 * 209.99888 * 20 18 16 23 23 H 1.48496 * 109.47479 * 330.00479 * 20 18 16 24 24 C 1.34004 * 110.15195 * 359.47002 * 8 7 6 25 25 C 1.40456 * 119.40953 * 359.49694 * 6 5 4 26 26 C 1.38168 * 119.92213 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47374 * 59.99431 * 1 2 3 28 28 H 1.08997 * 109.47538 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47023 * 299.99665 * 1 2 3 30 30 H 1.07999 * 119.67650 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.97971 * 179.97438 * 5 4 3 32 32 H 1.09007 * 109.46880 * 29.97323 * 9 8 7 33 33 H 1.08995 * 109.47462 * 149.97639 * 9 8 7 34 34 H 1.00896 * 110.99885 * 56.04757 * 10 9 8 35 35 H 1.08993 * 109.47529 * 300.00166 * 11 10 9 36 36 H 1.09000 * 109.47158 * 60.00357 * 11 10 9 37 37 H 1.08999 * 109.47467 * 59.99944 * 13 12 11 38 38 H 1.09005 * 109.46991 * 179.97438 * 13 12 11 39 39 H 1.09000 * 109.47207 * 299.99688 * 13 12 11 40 40 H 1.08993 * 109.46981 * 59.99846 * 14 12 11 41 41 H 1.08995 * 109.47096 * 179.97438 * 14 12 11 42 42 H 1.08999 * 109.47049 * 299.99774 * 14 12 11 43 43 H 1.08993 * 109.47270 * 300.00379 * 15 12 11 44 44 H 1.09000 * 109.47081 * 60.00365 * 15 12 11 45 45 H 0.97001 * 119.99931 * 179.97438 * 19 18 16 46 46 H 1.08004 * 126.89809 * 179.90116 * 24 8 7 47 47 H 1.08002 * 120.22570 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2867 2.3779 0.0005 5 6 1.8968 3.6132 0.0011 6 6 3.2830 3.7041 -0.0039 7 8 4.1429 4.7438 -0.0092 8 6 5.4161 4.3128 -0.0121 9 6 6.6295 5.2065 -0.0176 10 7 7.0200 5.4935 -1.4044 11 6 8.2019 6.3649 -1.4489 12 6 8.5778 6.6403 -2.9062 13 6 8.8915 5.3188 -3.6105 14 6 7.4090 7.3299 -3.6128 15 6 9.8092 7.5472 -2.9526 16 6 10.1791 7.8190 -4.3880 17 1 9.5941 7.3884 -5.1872 18 6 11.2642 8.6175 -4.6809 19 7 11.9768 9.1416 -3.7077 20 14 11.7231 8.9538 -6.4602 21 1 11.0148 10.1706 -6.9325 22 1 13.1896 9.1640 -6.5619 23 1 11.3297 7.7945 -7.3005 24 6 5.4501 2.9733 0.0029 25 6 4.0513 2.5283 0.0013 26 6 3.4262 1.2819 0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2086 2.3139 0.0005 31 1 1.2970 4.5114 0.0011 32 1 6.3956 6.1399 0.4946 33 1 7.4513 4.7068 0.4952 34 1 6.2529 5.8987 -1.9195 35 1 7.9786 7.3061 -0.9467 36 1 9.0347 5.8734 -0.9459 37 1 8.0146 4.6723 -3.5774 38 1 9.1589 5.5150 -4.6489 39 1 9.7242 4.8275 -3.1071 40 1 7.1855 8.2713 -3.1111 41 1 7.6770 7.5265 -4.6509 42 1 6.5321 6.6834 -3.5798 43 1 9.5861 8.4887 -2.4507 44 1 10.6417 7.0556 -2.4494 45 1 12.7405 9.7031 -3.9138 46 1 6.3300 2.3469 0.0031 47 1 4.0167 0.3777 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342294404.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:01 Heat of formation + Delta-G solvation = -38.291964 kcal Electronic energy + Delta-G solvation = -25507.228885 eV Core-core repulsion = 21848.648701 eV Total energy + Delta-G solvation = -3658.580184 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -43.43712 -40.62588 -39.22771 -37.51183 -36.08516 -34.38236 -33.56887 -31.27343 -30.68233 -28.96456 -27.98056 -27.89438 -27.43229 -25.88422 -24.08514 -23.59539 -22.62733 -21.94627 -19.61321 -19.00726 -18.49774 -18.31666 -17.39170 -17.30178 -16.68484 -16.57252 -16.52332 -16.26866 -15.60134 -15.34760 -15.10469 -14.71425 -14.36115 -14.25356 -14.15079 -13.91370 -13.82014 -13.66969 -13.39771 -13.31126 -13.21502 -12.81446 -12.69709 -12.66513 -12.39531 -12.23318 -12.14496 -11.89811 -11.80769 -11.73297 -11.37571 -11.17312 -10.86130 -10.75631 -10.48908 -9.46459 -9.21343 -9.00691 -8.12859 -6.19239 -0.18568 0.34452 1.30142 1.41482 1.41982 1.52595 1.68161 2.31301 2.44650 2.63305 3.21130 3.26241 3.49489 3.67067 3.85585 3.99926 4.15271 4.15496 4.18747 4.26768 4.35786 4.40118 4.44695 4.46625 4.49204 4.62718 4.77283 4.77406 4.80332 4.87733 4.96596 5.02403 5.08329 5.16796 5.19650 5.21502 5.22898 5.41390 5.44831 5.53357 5.55549 5.59836 5.65009 5.87812 5.92808 5.96196 6.11564 6.35317 6.38520 6.41495 6.95733 7.47744 8.99190 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031381 B = 0.002002 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.044885 B =13981.135803 C =14203.956209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.333 6.333 3 C 0.107 3.893 4 C -0.170 4.170 5 C -0.069 4.069 6 C -0.005 4.005 7 O -0.208 6.208 8 C 0.041 3.959 9 C 0.134 3.866 10 N -0.680 5.680 11 C 0.081 3.919 12 C -0.056 4.056 13 C -0.108 4.108 14 C -0.124 4.124 15 C 0.040 3.960 16 C -0.514 4.514 17 H 0.064 0.936 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.955 3.045 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.264 1.264 24 C -0.197 4.197 25 C -0.107 4.107 26 C -0.129 4.129 27 H 0.067 0.933 28 H 0.118 0.882 29 H 0.069 0.931 30 H 0.172 0.828 31 H 0.157 0.843 32 H 0.056 0.944 33 H 0.120 0.880 34 H 0.344 0.656 35 H 0.026 0.974 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.037 0.963 39 H 0.035 0.965 40 H 0.038 0.962 41 H 0.046 0.954 42 H 0.062 0.938 43 H -0.014 1.014 44 H -0.011 1.011 45 H 0.259 0.741 46 H 0.173 0.827 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.733 -16.224 10.207 31.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.248 6.248 3 C 0.061 3.939 4 C -0.189 4.189 5 C -0.087 4.087 6 C -0.052 4.052 7 O -0.110 6.110 8 C -0.006 4.006 9 C 0.006 3.994 10 N -0.312 5.312 11 C -0.047 4.047 12 C -0.056 4.056 13 C -0.165 4.165 14 C -0.181 4.181 15 C 0.003 3.997 16 C -0.552 4.552 17 H 0.082 0.918 18 C -0.201 4.201 19 N -0.577 5.577 20 Si 0.780 3.220 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.217 4.217 25 C -0.108 4.108 26 C -0.148 4.148 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.087 0.913 30 H 0.189 0.811 31 H 0.175 0.825 32 H 0.074 0.926 33 H 0.138 0.862 34 H 0.164 0.836 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.005 0.995 44 H 0.007 0.993 45 H 0.068 0.932 46 H 0.190 0.810 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -24.239 -16.618 10.171 31.099 hybrid contribution 0.363 1.426 -0.517 1.560 sum -23.876 -15.192 9.654 29.900 Atomic orbital electron populations 1.23401 0.76148 1.05771 1.02558 1.86075 1.23672 1.26082 1.88929 1.18821 0.91756 0.85179 0.98112 1.21333 1.01660 0.89954 1.05908 1.20045 0.88383 0.99587 1.00734 1.19927 0.92729 0.84953 1.07542 1.83931 1.15358 1.34668 1.77072 1.22410 0.82968 0.94278 1.00973 1.20561 0.90440 0.97003 0.91388 1.60596 1.08682 1.50158 1.11803 1.21885 0.92470 0.93800 0.96561 1.20503 0.95565 0.95873 0.93663 1.21512 1.00218 0.95661 0.99132 1.21700 0.96892 0.98982 1.00570 1.19001 0.92201 0.93022 0.95516 1.21622 1.11586 1.28422 0.93593 0.91770 1.25898 0.96805 0.96288 1.01127 1.70098 1.19468 1.34733 1.33435 0.85596 0.77087 0.78733 0.80535 1.20175 1.21259 1.18861 1.22439 0.95870 0.93988 1.09369 1.19861 0.93786 0.93482 1.03721 1.19759 0.92107 0.96639 1.06256 0.91431 0.86390 0.91262 0.81055 0.82528 0.92590 0.86158 0.83644 0.95528 0.91172 0.91719 0.94436 0.94622 0.94249 0.93452 0.91899 0.99523 0.99306 0.93198 0.80965 0.84231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.22 16 2 O -0.33 -5.55 10.49 -93.25 -0.98 -6.53 16 3 C 0.11 2.01 6.68 22.48 0.15 2.16 16 4 C -0.17 -2.58 9.01 22.39 0.20 -2.37 16 5 C -0.07 -1.25 10.05 22.32 0.22 -1.03 16 6 C 0.00 -0.12 7.41 22.97 0.17 0.05 16 7 O -0.21 -5.46 10.59 -9.87 -0.10 -5.56 16 8 C 0.04 1.01 6.74 24.72 0.17 1.18 16 9 C 0.13 3.03 6.19 85.56 0.53 3.56 16 10 N -0.68 -18.31 5.70 -517.90 -2.95 -21.26 16 11 C 0.08 2.63 4.65 86.30 0.40 3.03 16 12 C -0.06 -2.17 0.60 -52.18 -0.03 -2.20 16 13 C -0.11 -4.08 8.06 71.98 0.58 -3.50 16 14 C -0.12 -4.50 7.89 71.98 0.57 -3.93 16 15 C 0.04 2.05 4.04 29.85 0.12 2.17 16 16 C -0.51 -28.35 7.65 25.60 0.20 -28.15 16 17 H 0.06 3.41 5.68 -2.91 -0.02 3.40 16 18 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 19 N -0.94 -56.93 13.29 21.45 0.28 -56.65 16 20 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 23 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 24 C -0.20 -4.65 11.01 23.54 0.26 -4.39 16 25 C -0.11 -2.63 6.39 -20.21 -0.13 -2.76 16 26 C -0.13 -2.82 10.03 22.54 0.23 -2.60 16 27 H 0.07 0.34 7.65 -2.39 -0.02 0.32 16 28 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.07 0.32 7.65 -2.39 -0.02 0.30 16 30 H 0.17 1.33 6.26 -2.91 -0.02 1.31 16 31 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 32 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.12 2.35 8.14 -2.39 -0.02 2.34 16 34 H 0.34 9.28 6.76 -89.70 -0.61 8.67 16 35 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.06 2.15 7.60 -2.39 -0.02 2.14 16 38 H 0.04 1.52 6.62 -2.38 -0.02 1.51 16 39 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.05 1.87 6.62 -2.39 -0.02 1.86 16 42 H 0.06 1.90 6.57 -2.39 -0.02 1.88 16 43 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 44 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 45 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 46 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 47 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -68.05 379.78 3.84 -64.21 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.36 Total: 16.56 kcal Atomic # 6 Polarization: -42.56 SS G_CDS: 5.21 Total: -37.35 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -2.67 Total: -77.91 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: -1.08 Total: -12.09 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -68.05 3.84 -64.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342294404.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.918 kcal (2) G-P(sol) polarization free energy of solvation -68.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds