Wall clock time and date at job start Tue Mar 31 2020 12:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46650 * 2 1 4 4 C 1.52998 * 109.47504 * 120.00197 * 2 1 3 5 5 H 1.08996 * 109.47039 * 54.41185 * 4 2 1 6 6 O 1.42902 * 109.46989 * 294.41230 * 4 2 1 7 7 C 1.52998 * 109.47345 * 174.41237 * 4 2 1 8 8 C 1.53005 * 115.54696 * 297.40069 * 7 4 2 9 9 N 1.46499 * 109.46970 * 180.98240 * 8 7 4 10 10 C 1.34779 * 120.00131 * 180.02562 * 9 8 7 11 11 O 1.21547 * 119.99586 * 359.97438 * 10 9 8 12 12 C 1.47883 * 119.99813 * 180.27554 * 10 9 8 13 13 C 1.39916 * 120.03073 * 359.44626 * 12 10 9 14 14 C 1.38332 * 120.36168 * 179.71803 * 13 12 10 15 15 C 1.37755 * 120.40665 * 0.56020 * 14 13 12 16 16 C 1.40743 * 120.04109 * 359.72109 * 15 14 13 17 17 C 1.41442 * 120.17470 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99511 * 149.84611 * 17 16 15 19 19 C 1.39932 * 120.00387 * 329.85392 * 17 16 15 20 20 N 1.30828 * 120.00397 * 157.06402 * 19 17 16 21 21 Si 1.86803 * 119.99749 * 337.06464 * 19 17 16 22 22 H 1.48502 * 109.47050 * 88.43961 * 21 19 17 23 23 H 1.48502 * 109.47215 * 208.43971 * 21 19 17 24 24 H 1.48502 * 109.47084 * 328.44097 * 21 19 17 25 25 C 1.39005 * 120.02270 * 179.72521 * 12 10 9 26 26 C 1.53001 * 117.50033 * 83.06840 * 7 4 2 27 27 C 1.52993 * 117.50371 * 151.72889 * 7 4 2 28 28 H 1.08996 * 109.47841 * 56.05026 * 1 2 3 29 29 H 1.09005 * 109.46783 * 176.04597 * 1 2 3 30 30 H 1.09004 * 109.47476 * 296.03887 * 1 2 3 31 31 H 1.09003 * 109.47412 * 240.00629 * 2 1 3 32 32 H 1.09008 * 109.47008 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47675 * 299.99842 * 3 2 1 34 34 H 1.08999 * 109.47007 * 60.00584 * 3 2 1 35 35 H 0.96702 * 114.00083 * 299.99500 * 6 4 2 36 36 H 1.08995 * 109.47234 * 60.98235 * 8 7 4 37 37 H 1.08999 * 109.47215 * 300.97744 * 8 7 4 38 38 H 0.97004 * 120.00295 * 359.97438 * 9 8 7 39 39 H 1.08004 * 119.82027 * 359.97438 * 13 12 10 40 40 H 1.07992 * 119.79323 * 180.26067 * 14 13 12 41 41 H 1.07998 * 119.97701 * 179.73759 * 15 14 13 42 42 H 0.96997 * 120.00111 * 179.97438 * 20 19 17 43 43 H 1.08001 * 120.19764 * 359.97155 * 25 12 10 44 44 H 1.09000 * 117.49638 * 215.00834 * 26 7 4 45 45 H 1.08998 * 117.49962 * 0.02562 * 26 7 4 46 46 H 1.09007 * 117.49669 * 359.97438 * 27 7 4 47 47 H 1.08995 * 117.50291 * 144.99239 * 27 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5973 -1.7159 1.3006 6 8 1.6739 0.0238 2.4123 7 6 3.5636 -0.8440 1.1809 8 6 4.1071 -1.6735 0.0158 9 7 5.5693 -1.7227 0.0917 10 6 6.2700 -2.4022 -0.8378 11 8 5.6886 -2.9746 -1.7387 12 6 7.7456 -2.4568 -0.7576 13 6 8.4157 -1.7937 0.2763 14 6 9.7955 -1.8451 0.3612 15 6 10.5264 -2.5399 -0.5773 16 6 9.8702 -3.2083 -1.6278 17 6 10.6178 -3.9230 -2.5926 18 1 10.1895 -4.7897 -3.0740 19 6 11.9123 -3.5071 -2.9234 20 7 12.7612 -4.3585 -3.4391 21 14 12.4283 -1.7361 -2.6285 22 1 12.9683 -1.6006 -1.2518 23 1 13.4751 -1.3555 -3.6106 24 1 11.2516 -0.8445 -2.7887 25 6 8.4684 -3.1623 -1.7127 26 6 4.3905 0.3596 1.6375 27 6 4.3279 -0.9000 2.5050 28 1 -0.3634 0.5739 -0.8524 29 1 -0.3633 -1.0253 -0.0709 30 1 -0.3634 0.4511 0.9234 31 1 1.8933 -0.5137 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6765 1.9563 0.8900 35 1 2.0337 0.9211 2.4340 36 1 3.8075 -1.2159 -0.9270 37 1 3.7062 -2.6856 0.0721 38 1 6.0333 -1.2655 0.8105 39 1 7.8525 -1.2421 1.0144 40 1 10.3030 -1.3334 1.1654 41 1 11.6036 -2.5720 -0.5068 42 1 13.6584 -4.0702 -3.6687 43 1 7.9555 -3.6723 -2.5148 44 1 5.3217 0.5604 1.1078 45 1 3.8491 1.2387 1.9870 46 1 3.7454 -0.8489 3.4250 47 1 5.2180 -1.5278 2.5462 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343235257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:54 Heat of formation + Delta-G solvation = -55.614474 kcal Electronic energy + Delta-G solvation = -26437.856329 eV Core-core repulsion = 22778.524984 eV Total energy + Delta-G solvation = -3659.331345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.55988 -39.17272 -37.34911 -36.32358 -34.19249 -33.78739 -33.28912 -30.73693 -30.05952 -28.43869 -27.54715 -26.06455 -25.06884 -22.78446 -22.68422 -20.86323 -20.72142 -20.11254 -19.45454 -18.18329 -17.07316 -16.57528 -16.29442 -15.83792 -15.39944 -15.15740 -15.01479 -14.71847 -14.23951 -14.09475 -13.66418 -13.43072 -13.29615 -13.05238 -12.81146 -12.76890 -12.71291 -12.35986 -12.26190 -12.01041 -11.76295 -11.63918 -11.59479 -11.23801 -11.08395 -11.01973 -10.86791 -10.81007 -10.57842 -10.21989 -10.09268 -9.87051 -9.74730 -9.43550 -9.13581 -8.84179 -7.90440 -7.79187 -7.05835 -4.56911 1.88859 2.48922 3.03839 3.13846 3.21449 3.37111 3.41003 3.60619 3.90273 4.01187 4.31789 4.39431 4.44304 4.51242 4.54201 4.68826 4.78694 4.93090 5.25766 5.28485 5.31593 5.34224 5.39479 5.42755 5.55149 5.62793 5.63613 5.71228 5.73468 5.77586 5.80188 5.86631 5.88198 5.99266 5.99802 6.04572 6.42388 6.60942 6.64486 6.68809 6.95108 7.18411 7.25556 7.38146 7.48561 7.72893 7.76131 7.97953 8.25959 8.51609 8.64895 8.69760 9.96233 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026812 B = 0.002654 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.059879 B =10547.916056 C =10847.797203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C -0.157 4.157 4 C 0.153 3.847 5 H 0.106 0.894 6 O -0.554 6.554 7 C -0.170 4.170 8 C 0.159 3.841 9 N -0.735 5.735 10 C 0.563 3.437 11 O -0.547 6.547 12 C -0.109 4.109 13 C -0.219 4.219 14 C -0.082 4.082 15 C -0.225 4.225 16 C 0.082 3.918 17 C -0.446 4.446 18 H 0.094 0.906 19 C 0.086 3.914 20 N -0.798 5.798 21 Si 0.909 3.091 22 H -0.264 1.264 23 H -0.288 1.288 24 H -0.249 1.249 25 C -0.136 4.136 26 C -0.177 4.177 27 C -0.165 4.165 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.370 0.630 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.400 0.600 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.287 0.713 43 H 0.115 0.885 44 H 0.100 0.900 45 H 0.096 0.904 46 H 0.106 0.894 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.632 11.612 9.958 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.214 4.214 4 C 0.094 3.906 5 H 0.123 0.877 6 O -0.361 6.361 7 C -0.171 4.171 8 C 0.035 3.965 9 N -0.391 5.391 10 C 0.353 3.647 11 O -0.425 6.425 12 C -0.112 4.112 13 C -0.239 4.239 14 C -0.100 4.100 15 C -0.244 4.244 16 C 0.079 3.921 17 C -0.474 4.474 18 H 0.112 0.888 19 C -0.134 4.134 20 N -0.421 5.421 21 Si 0.734 3.266 22 H -0.190 1.190 23 H -0.215 1.215 24 H -0.172 1.172 25 C -0.156 4.156 26 C -0.214 4.214 27 C -0.202 4.202 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.219 0.781 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.238 0.762 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.125 0.875 42 H 0.097 0.903 43 H 0.133 0.867 44 H 0.119 0.881 45 H 0.115 0.885 46 H 0.124 0.876 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.137 10.530 9.306 22.162 hybrid contribution 0.998 1.410 0.233 1.743 sum -16.139 11.940 9.539 22.226 Atomic orbital electron populations 1.21782 0.94539 1.01873 1.01978 1.21786 0.96601 0.97267 0.98992 1.21974 1.01997 0.95641 1.01832 1.21268 0.89272 0.95521 0.84555 0.87674 1.86588 1.76466 1.30027 1.43020 1.22522 0.95224 1.02269 0.97035 1.20572 0.80494 0.99236 0.96149 1.46048 1.06437 1.55632 1.30942 1.18792 0.88107 0.77181 0.80572 1.90700 1.71834 1.45298 1.34695 1.19415 0.90132 1.03039 0.98572 1.20349 0.94263 1.08302 1.00997 1.20523 0.93574 0.98178 0.97766 1.21318 0.98909 1.06785 0.97410 1.17685 0.91539 0.90651 0.92201 1.19489 0.97007 1.11666 1.19204 0.88827 1.26158 0.95157 0.99991 0.92080 1.69732 1.05519 1.36178 1.30659 0.86396 0.79339 0.82637 0.78188 1.18991 1.21456 1.17219 1.21291 0.93666 1.01973 0.98689 1.23141 1.02136 0.92281 1.03861 1.23136 1.02264 1.00269 0.94545 0.92741 0.92693 0.92116 0.89907 0.91478 0.92343 0.92798 0.78065 0.91024 0.91113 0.76227 0.88906 0.88317 0.87514 0.90261 0.86689 0.88126 0.88544 0.87608 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.14 37.15 0.34 -0.70 16 2 C -0.13 -0.97 2.65 -90.62 -0.24 -1.21 16 3 C -0.16 -1.08 7.97 37.16 0.30 -0.78 16 4 C 0.15 1.25 2.90 -26.73 -0.08 1.18 16 5 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 6 O -0.55 -4.53 11.64 -35.23 -0.41 -4.94 16 7 C -0.17 -1.52 1.85 -154.51 -0.29 -1.81 16 8 C 0.16 1.93 5.48 -4.04 -0.02 1.91 16 9 N -0.73 -10.64 4.94 -61.24 -0.30 -10.94 16 10 C 0.56 10.95 7.77 -12.31 -0.10 10.86 16 11 O -0.55 -12.25 16.33 5.32 0.09 -12.16 16 12 C -0.11 -2.30 5.87 -105.04 -0.62 -2.92 16 13 C -0.22 -4.19 9.55 -38.92 -0.37 -4.56 16 14 C -0.08 -1.66 10.01 -39.72 -0.40 -2.06 16 15 C -0.22 -5.20 7.40 -38.81 -0.29 -5.49 16 16 C 0.08 2.06 5.05 -106.87 -0.54 1.52 16 17 C -0.45 -11.91 9.52 -37.73 -0.36 -12.27 16 18 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 19 C 0.09 2.21 5.32 -17.35 -0.09 2.12 16 20 N -0.80 -20.78 13.93 55.55 0.77 -20.01 16 21 Si 0.91 20.10 24.99 -169.99 -4.25 15.85 16 22 H -0.26 -5.60 6.36 56.52 0.36 -5.24 16 23 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.25 -5.66 7.11 56.52 0.40 -5.26 16 25 C -0.14 -3.27 9.34 -38.44 -0.36 -3.62 16 26 C -0.18 -1.41 7.11 -26.70 -0.19 -1.60 16 27 C -0.17 -1.45 9.15 -26.70 -0.24 -1.69 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.45 7.74 -51.93 -0.40 0.05 16 31 H 0.08 0.70 6.78 -51.93 -0.35 0.35 16 32 H 0.07 0.49 5.72 -51.92 -0.30 0.20 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.31 6.71 -51.93 -0.35 -0.04 16 35 H 0.37 2.19 5.39 45.56 0.25 2.44 16 36 H 0.07 0.90 7.01 -51.93 -0.36 0.54 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.40 5.06 3.60 -40.82 -0.15 4.91 16 39 H 0.09 1.43 6.38 -52.48 -0.33 1.10 16 40 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 41 H 0.11 2.46 4.92 -52.49 -0.26 2.20 16 42 H 0.29 6.73 8.30 -40.82 -0.34 6.39 16 43 H 0.12 2.82 7.64 -52.49 -0.40 2.42 16 44 H 0.10 0.89 7.08 -51.93 -0.37 0.52 16 45 H 0.10 0.59 6.01 -51.93 -0.31 0.28 16 46 H 0.11 0.90 7.58 -51.92 -0.39 0.50 16 47 H 0.10 0.94 6.95 -51.93 -0.36 0.58 16 LS Contribution 363.11 15.07 5.47 5.47 Total: -1.00 -28.88 363.11 -8.40 -37.28 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -6.23 Total: 10.56 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -3.54 Total: -21.12 kcal Atomic # 7 Polarization: -31.42 SS G_CDS: 0.47 Total: -30.94 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.32 Total: -17.10 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.25 Total: 15.85 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.88 -8.40 -37.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343235257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.334 kcal (2) G-P(sol) polarization free energy of solvation -28.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds