Wall clock time and date at job start Tue Mar 31 2020 12:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46650 * 2 1 4 4 C 1.52998 * 109.47504 * 120.00197 * 2 1 3 5 5 H 1.08996 * 109.47039 * 54.41185 * 4 2 1 6 6 O 1.42902 * 109.46989 * 294.41230 * 4 2 1 7 7 C 1.52998 * 109.47345 * 174.41237 * 4 2 1 8 8 C 1.53005 * 115.54696 * 297.40069 * 7 4 2 9 9 N 1.46499 * 109.46970 * 180.98240 * 8 7 4 10 10 C 1.34779 * 120.00131 * 180.02562 * 9 8 7 11 11 O 1.21547 * 119.99586 * 359.97438 * 10 9 8 12 12 C 1.47883 * 119.99813 * 180.27554 * 10 9 8 13 13 C 1.39916 * 120.03073 * 359.44626 * 12 10 9 14 14 C 1.38332 * 120.36168 * 179.71803 * 13 12 10 15 15 C 1.37755 * 120.40665 * 0.56020 * 14 13 12 16 16 C 1.40743 * 120.04109 * 359.72109 * 15 14 13 17 17 C 1.41442 * 120.17470 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99511 * 149.84611 * 17 16 15 19 19 C 1.39932 * 120.00387 * 329.85392 * 17 16 15 20 20 N 1.30828 * 120.00397 * 157.06402 * 19 17 16 21 21 Si 1.86803 * 119.99749 * 337.06464 * 19 17 16 22 22 H 1.48502 * 109.47050 * 88.43961 * 21 19 17 23 23 H 1.48502 * 109.47215 * 208.43971 * 21 19 17 24 24 H 1.48502 * 109.47084 * 328.44097 * 21 19 17 25 25 C 1.39005 * 120.02270 * 179.72521 * 12 10 9 26 26 C 1.53001 * 117.50033 * 83.06840 * 7 4 2 27 27 C 1.52993 * 117.50371 * 151.72889 * 7 4 2 28 28 H 1.08996 * 109.47841 * 56.05026 * 1 2 3 29 29 H 1.09005 * 109.46783 * 176.04597 * 1 2 3 30 30 H 1.09004 * 109.47476 * 296.03887 * 1 2 3 31 31 H 1.09003 * 109.47412 * 240.00629 * 2 1 3 32 32 H 1.09008 * 109.47008 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47675 * 299.99842 * 3 2 1 34 34 H 1.08999 * 109.47007 * 60.00584 * 3 2 1 35 35 H 0.96702 * 114.00083 * 299.99500 * 6 4 2 36 36 H 1.08995 * 109.47234 * 60.98235 * 8 7 4 37 37 H 1.08999 * 109.47215 * 300.97744 * 8 7 4 38 38 H 0.97004 * 120.00295 * 359.97438 * 9 8 7 39 39 H 1.08004 * 119.82027 * 359.97438 * 13 12 10 40 40 H 1.07992 * 119.79323 * 180.26067 * 14 13 12 41 41 H 1.07998 * 119.97701 * 179.73759 * 15 14 13 42 42 H 0.96997 * 120.00111 * 179.97438 * 20 19 17 43 43 H 1.08001 * 120.19764 * 359.97155 * 25 12 10 44 44 H 1.09000 * 117.49638 * 215.00834 * 26 7 4 45 45 H 1.08998 * 117.49962 * 0.02562 * 26 7 4 46 46 H 1.09007 * 117.49669 * 359.97438 * 27 7 4 47 47 H 1.08995 * 117.50291 * 144.99239 * 27 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5973 -1.7159 1.3006 6 8 1.6739 0.0238 2.4123 7 6 3.5636 -0.8440 1.1809 8 6 4.1071 -1.6735 0.0158 9 7 5.5693 -1.7227 0.0917 10 6 6.2700 -2.4022 -0.8378 11 8 5.6886 -2.9746 -1.7387 12 6 7.7456 -2.4568 -0.7576 13 6 8.4157 -1.7937 0.2763 14 6 9.7955 -1.8451 0.3612 15 6 10.5264 -2.5399 -0.5773 16 6 9.8702 -3.2083 -1.6278 17 6 10.6178 -3.9230 -2.5926 18 1 10.1895 -4.7897 -3.0740 19 6 11.9123 -3.5071 -2.9234 20 7 12.7612 -4.3585 -3.4391 21 14 12.4283 -1.7361 -2.6285 22 1 12.9683 -1.6006 -1.2518 23 1 13.4751 -1.3555 -3.6106 24 1 11.2516 -0.8445 -2.7887 25 6 8.4684 -3.1623 -1.7127 26 6 4.3905 0.3596 1.6375 27 6 4.3279 -0.9000 2.5050 28 1 -0.3634 0.5739 -0.8524 29 1 -0.3633 -1.0253 -0.0709 30 1 -0.3634 0.4511 0.9234 31 1 1.8933 -0.5137 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6765 1.9563 0.8900 35 1 2.0337 0.9211 2.4340 36 1 3.8075 -1.2159 -0.9270 37 1 3.7062 -2.6856 0.0721 38 1 6.0333 -1.2655 0.8105 39 1 7.8525 -1.2421 1.0144 40 1 10.3030 -1.3334 1.1654 41 1 11.6036 -2.5720 -0.5068 42 1 13.6584 -4.0702 -3.6687 43 1 7.9555 -3.6723 -2.5148 44 1 5.3217 0.5604 1.1078 45 1 3.8491 1.2387 1.9870 46 1 3.7454 -0.8489 3.4250 47 1 5.2180 -1.5278 2.5462 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343235257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:53 Heat of formation + Delta-G solvation = -73.884668 kcal Electronic energy + Delta-G solvation = -26438.648584 eV Core-core repulsion = 22778.524984 eV Total energy + Delta-G solvation = -3660.123600 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.53031 -40.48385 -39.01744 -37.23119 -35.61281 -34.85015 -34.50052 -32.47708 -31.77961 -29.33204 -28.10718 -27.34391 -26.62193 -24.32332 -23.33097 -22.48552 -21.74562 -21.40933 -20.35409 -19.65606 -18.24771 -17.78145 -17.30972 -17.26819 -16.55476 -16.41221 -16.36294 -16.16033 -15.43810 -15.30097 -14.93711 -14.60720 -14.57619 -14.20439 -14.18935 -13.98447 -13.76603 -13.44969 -13.35269 -12.89290 -12.87987 -12.78992 -12.74289 -12.38269 -12.33450 -12.23195 -11.87055 -11.82363 -11.68508 -11.58782 -11.51038 -11.20170 -10.95018 -10.82493 -10.54170 -10.11657 -9.64140 -9.58026 -8.94772 -6.55163 0.16064 0.72843 1.25623 1.40750 1.46428 1.93111 2.11433 2.12040 2.62004 2.70111 3.37505 3.43774 3.62137 3.66708 3.83992 3.87255 3.89620 4.06579 4.12868 4.25037 4.32834 4.39637 4.55847 4.60392 4.68564 4.75265 4.77753 4.83481 4.88043 4.88955 4.91213 4.92939 5.04592 5.05454 5.12228 5.14844 5.23481 5.24073 5.38554 5.41311 5.44021 5.47246 5.63379 5.71480 5.84447 6.09819 6.29473 6.50252 6.65784 6.73312 6.76487 7.17889 8.14270 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026812 B = 0.002654 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.059879 B =10547.916056 C =10847.797203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C -0.156 4.156 4 C 0.161 3.839 5 H 0.097 0.903 6 O -0.559 6.559 7 C -0.172 4.172 8 C 0.158 3.842 9 N -0.709 5.709 10 C 0.561 3.439 11 O -0.585 6.585 12 C -0.114 4.114 13 C -0.185 4.185 14 C -0.080 4.080 15 C -0.228 4.228 16 C 0.067 3.933 17 C -0.494 4.494 18 H 0.049 0.951 19 C 0.050 3.950 20 N -0.842 5.842 21 Si 0.964 3.036 22 H -0.240 1.240 23 H -0.273 1.273 24 H -0.259 1.259 25 C -0.168 4.168 26 C -0.164 4.164 27 C -0.165 4.165 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.381 0.619 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.412 0.588 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.110 0.890 42 H 0.296 0.704 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.120 0.880 46 H 0.112 0.888 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.424 15.437 13.577 26.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C -0.213 4.213 4 C 0.101 3.899 5 H 0.115 0.885 6 O -0.367 6.367 7 C -0.173 4.173 8 C 0.035 3.965 9 N -0.364 5.364 10 C 0.350 3.650 11 O -0.466 6.466 12 C -0.117 4.117 13 C -0.205 4.205 14 C -0.098 4.098 15 C -0.247 4.247 16 C 0.064 3.936 17 C -0.523 4.523 18 H 0.068 0.932 19 C -0.166 4.166 20 N -0.468 5.468 21 Si 0.785 3.215 22 H -0.164 1.164 23 H -0.199 1.199 24 H -0.183 1.183 25 C -0.188 4.188 26 C -0.201 4.201 27 C -0.202 4.202 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.232 0.768 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.252 0.748 39 H 0.163 0.837 40 H 0.165 0.835 41 H 0.127 0.873 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.116 0.884 45 H 0.138 0.862 46 H 0.130 0.870 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.940 14.378 12.973 26.399 hybrid contribution 0.994 0.257 -0.727 1.258 sum -16.947 14.635 12.246 25.521 Atomic orbital electron populations 1.21761 0.94272 1.01776 1.02163 1.21757 0.96816 0.97790 0.98204 1.21963 1.01765 0.94962 1.02567 1.21114 0.88526 0.95384 0.84847 0.88522 1.86584 1.76558 1.30846 1.42731 1.22352 0.95796 1.03069 0.96068 1.20662 0.78689 0.99517 0.97667 1.45837 1.07455 1.53616 1.29495 1.18613 0.87619 0.77643 0.81106 1.90691 1.72247 1.47161 1.36534 1.19693 0.91410 1.02209 0.98356 1.20947 0.94450 1.05279 0.99776 1.21046 0.93949 0.97028 0.97774 1.21519 0.99440 1.06473 0.97293 1.17763 0.91864 0.91307 0.92622 1.19428 0.98700 1.12280 1.21850 0.93228 1.26882 0.94544 1.03540 0.91618 1.69756 1.06318 1.37924 1.32767 0.85569 0.78843 0.77374 0.79688 1.16412 1.19924 1.18321 1.21212 0.93807 1.03970 0.99850 1.23251 1.01703 0.92571 1.02582 1.23163 1.01912 1.00680 0.94454 0.92396 0.93031 0.92002 0.91199 0.91727 0.92517 0.91253 0.76790 0.91463 0.92095 0.74754 0.83746 0.83474 0.87265 0.89334 0.89364 0.88415 0.86212 0.86959 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.14 71.98 0.66 -1.17 16 2 C -0.13 -1.70 2.65 -10.79 -0.03 -1.73 16 3 C -0.16 -1.69 7.97 71.98 0.57 -1.12 16 4 C 0.16 2.26 2.90 30.59 0.09 2.35 16 5 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 6 O -0.56 -7.31 11.64 -148.98 -1.73 -9.05 16 7 C -0.17 -2.60 1.85 -52.18 -0.10 -2.70 16 8 C 0.16 3.57 5.48 86.38 0.47 4.04 16 9 N -0.71 -18.70 4.94 -465.94 -2.30 -21.00 16 10 C 0.56 21.30 7.77 86.80 0.67 21.97 16 11 O -0.58 -26.79 16.33 -3.86 -0.06 -26.86 16 12 C -0.11 -4.68 5.87 -20.13 -0.12 -4.80 16 13 C -0.19 -6.21 9.55 22.70 0.22 -6.00 16 14 C -0.08 -2.85 10.01 22.18 0.22 -2.63 16 15 C -0.23 -10.14 7.40 22.77 0.17 -9.97 16 16 C 0.07 3.46 5.05 -21.32 -0.11 3.35 16 17 C -0.49 -28.38 9.52 23.47 0.22 -28.16 16 18 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 19 C 0.05 2.66 5.32 85.25 0.45 3.11 16 20 N -0.84 -46.14 13.93 21.82 0.30 -45.83 16 21 Si 0.96 41.20 24.99 68.60 1.71 42.91 16 22 H -0.24 -9.24 6.36 99.48 0.63 -8.61 16 23 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 24 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 25 C -0.17 -8.39 9.34 23.01 0.21 -8.18 16 26 C -0.16 -1.89 7.11 30.62 0.22 -1.68 16 27 C -0.17 -2.26 9.15 30.61 0.28 -1.98 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.06 0.78 7.74 -2.38 -0.02 0.76 16 31 H 0.07 1.12 6.78 -2.39 -0.02 1.10 16 32 H 0.06 0.74 5.72 -2.38 -0.01 0.72 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.54 6.71 -2.39 -0.02 0.52 16 35 H 0.38 2.95 5.39 -74.06 -0.40 2.55 16 36 H 0.07 1.62 7.01 -2.39 -0.02 1.61 16 37 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.41 8.60 3.60 -92.71 -0.33 8.27 16 39 H 0.14 3.40 6.38 -2.91 -0.02 3.38 16 40 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 41 H 0.11 4.79 4.92 -2.91 -0.01 4.77 16 42 H 0.30 14.40 8.30 -92.71 -0.77 13.63 16 43 H 0.09 4.75 7.64 -2.91 -0.02 4.73 16 44 H 0.10 1.24 7.08 -2.39 -0.02 1.23 16 45 H 0.12 0.86 6.01 -2.39 -0.01 0.84 16 46 H 0.11 1.45 7.58 -2.38 -0.02 1.44 16 47 H 0.09 1.39 6.95 -2.39 -0.02 1.37 16 Total: -1.00 -67.90 363.11 2.23 -65.67 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.20 Total: 29.43 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: 4.11 Total: -35.27 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: -2.00 Total: -66.83 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -1.80 Total: -35.90 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 1.71 Total: 42.91 kcal Total: -67.90 2.23 -65.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343235257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.220 kcal (2) G-P(sol) polarization free energy of solvation -67.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds