Wall clock time and date at job start Tue Mar 31 2020 12:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47050 * 2 1 4 4 C 1.53004 * 109.47263 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47838 * 54.97710 * 4 3 2 6 6 C 1.53093 * 109.48166 * 174.99724 * 4 3 2 7 7 C 1.53169 * 109.16299 * 177.58857 * 6 4 3 8 8 H 1.09001 * 109.54475 * 183.14853 * 7 6 4 9 9 C 1.50708 * 109.54260 * 62.97769 * 7 6 4 10 10 O 1.21286 * 119.99689 * 359.97438 * 9 7 6 11 11 N 1.34772 * 120.00299 * 179.97438 * 9 7 6 12 12 C 1.39122 * 120.00450 * 175.81601 * 11 9 7 13 13 C 1.38644 * 120.28293 * 34.52888 * 12 11 9 14 14 C 1.38224 * 120.03434 * 179.97438 * 13 12 11 15 15 C 1.38863 * 120.61511 * 0.04768 * 14 13 12 16 16 C 1.36472 * 120.57726 * 0.02562 * 15 14 13 17 17 C 1.40733 * 119.94092 * 359.65819 * 16 15 14 18 18 C 1.41071 * 120.30195 * 180.34554 * 17 16 15 19 19 H 1.07995 * 120.00072 * 214.96625 * 18 17 16 20 20 C 1.39963 * 119.99895 * 34.96607 * 18 17 16 21 21 N 1.30858 * 119.99817 * 355.67178 * 20 18 17 22 22 Si 1.86799 * 120.00025 * 175.67457 * 20 18 17 23 23 H 1.48503 * 109.46790 * 59.99965 * 22 20 18 24 24 H 1.48498 * 109.47212 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47116 * 299.99908 * 22 20 18 26 26 C 1.53173 * 109.04020 * 303.02096 * 7 6 4 27 27 C 1.53098 * 109.16038 * 56.98131 * 26 7 6 28 28 O 1.42897 * 109.41218 * 302.38730 * 27 26 7 29 29 H 1.09001 * 109.47329 * 60.00308 * 1 2 3 30 30 H 1.08998 * 109.47266 * 300.00229 * 1 2 3 31 31 H 1.08996 * 109.47147 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47329 * 119.99692 * 2 1 3 33 33 H 1.08998 * 109.47266 * 239.99771 * 2 1 3 34 34 H 1.09001 * 109.46803 * 300.00014 * 3 2 1 35 35 H 1.08998 * 109.47272 * 59.99775 * 3 2 1 36 36 H 1.09001 * 109.52316 * 297.49998 * 6 4 3 37 37 H 1.09002 * 109.51714 * 57.68509 * 6 4 3 38 38 H 0.97009 * 119.99622 * 355.81977 * 11 9 7 39 39 H 1.08008 * 119.98286 * 0.02562 * 13 12 11 40 40 H 1.08001 * 119.68871 * 180.02562 * 14 13 12 41 41 H 1.08001 * 119.71384 * 179.97438 * 15 14 13 42 42 H 1.07997 * 120.02542 * 179.97438 * 16 15 14 43 43 H 0.96998 * 119.99585 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.52280 * 176.88402 * 26 7 6 45 45 H 1.08997 * 109.52316 * 297.07635 * 26 7 6 46 46 H 1.08996 * 109.48333 * 62.37811 * 27 26 7 47 47 H 1.09008 * 109.47476 * 182.41138 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9338 0.8527 -0.8407 6 6 4.0806 2.8804 -0.1252 7 6 5.6110 2.8777 -0.0632 8 1 5.9791 3.9031 -0.0961 9 6 6.1617 2.1067 -1.2353 10 8 5.4057 1.6074 -2.0417 11 7 7.4940 1.9722 -1.3873 12 6 8.0008 1.1884 -2.4190 13 6 7.3452 1.1295 -3.6392 14 6 7.8536 0.3495 -4.6608 15 6 9.0201 -0.3816 -4.4789 16 6 9.6848 -0.3433 -3.2877 17 6 9.1920 0.4482 -2.2335 18 6 9.8771 0.4992 -1.0013 19 1 9.3228 0.5861 -0.0786 20 6 11.2751 0.4372 -0.9748 21 7 11.9427 0.2468 -2.0840 22 14 12.1878 0.6260 0.6440 23 1 11.7632 -0.4463 1.5796 24 1 13.6494 0.5220 0.4033 25 1 11.8763 1.9517 1.2363 26 6 6.0570 2.2147 1.2436 27 6 5.4701 0.8026 1.3165 28 8 4.0460 0.8747 1.2225 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.7552 3.3005 -1.0769 37 1 3.6839 3.4807 0.6936 38 1 8.0996 2.4219 -0.7774 39 1 6.4372 1.6941 -3.7919 40 1 7.3386 0.3081 -5.6092 41 1 9.4041 -0.9866 -5.2869 42 1 10.5910 -0.9158 -3.1558 43 1 12.9115 0.2034 -2.0656 44 1 7.1452 2.1587 1.2707 45 1 5.7003 2.8016 2.0900 46 1 5.8590 0.2043 0.4926 47 1 5.7490 0.3416 2.2641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344362542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:54 Heat of formation + Delta-G solvation = -86.937502 kcal Electronic energy + Delta-G solvation = -27476.246463 eV Core-core repulsion = 23815.556850 eV Total energy + Delta-G solvation = -3660.689613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.50995 -38.57711 -37.05213 -35.00095 -33.85830 -33.69339 -33.38889 -31.10901 -29.61565 -28.49432 -27.22902 -25.41798 -24.55650 -22.84952 -22.07848 -21.15495 -20.91024 -20.19527 -18.86479 -17.37816 -16.56392 -16.32769 -16.17362 -15.93723 -15.17010 -14.90310 -14.59911 -14.40480 -14.24867 -13.86743 -13.66855 -13.16297 -12.91975 -12.78495 -12.66127 -12.60829 -12.18666 -12.10812 -11.80539 -11.74501 -11.47295 -11.28659 -11.24662 -11.20106 -10.98521 -10.86841 -10.58862 -10.54189 -10.51591 -10.25311 -9.96229 -9.81842 -9.37597 -9.27882 -9.14674 -8.66396 -7.33427 -6.98689 -6.65275 -4.48123 2.58322 2.85688 3.01476 3.02256 3.16397 3.35992 3.86420 3.88208 3.97346 4.61106 4.64186 4.84657 4.88161 4.98290 5.09186 5.16113 5.25277 5.42549 5.46500 5.56452 5.59146 5.67770 5.71200 5.76185 5.81767 5.85979 5.97552 5.99362 6.02404 6.09678 6.17149 6.24920 6.30017 6.37885 6.44041 6.51772 6.55048 6.93091 7.04736 7.17235 7.26488 7.45217 7.63773 7.69885 7.96161 8.06460 8.09742 8.39160 8.54505 8.80043 8.82482 9.00778 10.19888 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014791 B = 0.004000 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.562558 B = 6998.941743 C = 8079.212652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.107 4.107 4 C 0.078 3.922 5 H 0.088 0.912 6 C -0.124 4.124 7 C -0.112 4.112 8 H 0.096 0.904 9 C 0.501 3.499 10 O -0.537 6.537 11 N -0.636 5.636 12 C 0.022 3.978 13 C -0.093 4.093 14 C -0.216 4.216 15 C -0.120 4.120 16 C -0.140 4.140 17 C 0.097 3.903 18 C -0.470 4.470 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.808 5.808 22 Si 0.912 3.088 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.146 4.146 27 C 0.060 3.940 28 O -0.382 6.382 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.402 0.598 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.130 0.870 43 H 0.279 0.721 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.054 0.946 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.104 4.290 6.703 13.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.144 4.144 4 C 0.021 3.979 5 H 0.106 0.894 6 C -0.162 4.162 7 C -0.133 4.133 8 H 0.114 0.886 9 C 0.288 3.712 10 O -0.415 6.415 11 N -0.277 5.277 12 C -0.071 4.071 13 C -0.113 4.113 14 C -0.236 4.236 15 C -0.139 4.139 16 C -0.160 4.160 17 C 0.093 3.907 18 C -0.501 4.501 19 H 0.091 0.909 20 C -0.142 4.142 21 N -0.434 5.434 22 Si 0.737 3.263 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.184 4.184 27 C -0.017 4.017 28 O -0.301 6.301 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.238 0.762 39 H 0.127 0.873 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.148 0.852 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.073 0.927 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.520 3.859 6.225 13.651 hybrid contribution 1.227 0.539 0.741 1.531 sum -10.294 4.397 6.967 13.185 Atomic orbital electron populations 1.21775 0.96288 1.01335 1.01416 1.21476 0.95129 0.96850 1.02624 1.21584 0.93252 0.97493 1.02069 1.22425 0.94040 0.93408 0.88052 0.89391 1.21944 0.93111 0.98448 1.02729 1.21393 0.97357 1.00512 0.94040 0.88568 1.20505 0.82657 0.81378 0.86673 1.90595 1.57613 1.48916 1.44421 1.42924 1.06036 1.47679 1.31079 1.17847 1.00691 1.00779 0.87812 1.20653 0.99142 0.99912 0.91643 1.20378 0.99448 1.05527 0.98252 1.20549 0.95858 1.00068 0.97387 1.21185 1.01145 1.00671 0.92982 1.17454 0.90250 0.88725 0.94259 1.19237 0.91064 1.46429 0.93399 0.90857 1.25848 0.98122 0.92564 0.97681 1.69756 1.09023 1.36952 1.27700 0.86305 0.78348 0.79753 0.81900 1.19042 1.20382 1.19099 1.22180 1.01883 0.97885 0.96450 1.22526 0.81276 0.95479 1.02407 1.87841 1.20588 1.82659 1.39024 0.92974 0.92994 0.92981 0.91364 0.92036 0.90874 0.91755 0.90381 0.91042 0.76237 0.87271 0.89211 0.89340 0.85208 0.90983 0.90044 0.90264 0.92731 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.09 16 2 C -0.12 -1.46 5.83 -26.73 -0.16 -1.61 16 3 C -0.11 -1.28 4.92 -26.73 -0.13 -1.41 16 4 C 0.08 1.12 2.35 -26.68 -0.06 1.06 16 5 H 0.09 1.55 5.81 -51.93 -0.30 1.25 16 6 C -0.12 -1.62 4.56 -26.60 -0.12 -1.74 16 7 C -0.11 -1.52 3.03 -91.59 -0.28 -1.80 16 8 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 9 C 0.50 9.05 5.67 -10.98 -0.06 8.99 16 10 O -0.54 -11.21 11.25 5.55 0.06 -11.15 16 11 N -0.64 -12.46 4.81 -9.47 -0.05 -12.50 16 12 C 0.02 0.53 6.34 -83.17 -0.53 0.00 16 13 C -0.09 -2.21 8.69 -39.44 -0.34 -2.55 16 14 C -0.22 -4.99 10.04 -39.36 -0.39 -5.38 16 15 C -0.12 -2.82 9.97 -39.99 -0.40 -3.22 16 16 C -0.14 -3.56 8.61 -39.28 -0.34 -3.90 16 17 C 0.10 2.45 5.56 -106.65 -0.59 1.85 16 18 C -0.47 -11.48 8.22 -37.86 -0.31 -11.79 16 19 H 0.07 1.68 7.63 -52.49 -0.40 1.28 16 20 C 0.07 1.75 5.42 -17.32 -0.09 1.65 16 21 N -0.81 -20.02 10.62 55.55 0.59 -19.43 16 22 Si 0.91 17.73 29.56 -169.99 -5.03 12.71 16 23 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 24 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 25 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 26 C -0.15 -1.84 5.57 -26.59 -0.15 -1.98 16 27 C 0.06 0.86 6.62 37.21 0.25 1.11 16 28 O -0.38 -5.72 9.94 -35.23 -0.35 -6.07 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.86 7.82 -51.93 -0.41 0.46 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.03 8.02 -51.93 -0.42 0.62 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.40 7.15 7.66 -40.82 -0.31 6.84 16 39 H 0.11 2.55 6.20 -52.48 -0.33 2.22 16 40 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 41 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 42 H 0.13 3.41 6.16 -52.49 -0.32 3.09 16 43 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 44 H 0.08 1.00 7.63 -51.93 -0.40 0.61 16 45 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.05 0.93 7.38 -51.93 -0.38 0.55 16 47 H 0.09 1.16 8.14 -51.92 -0.42 0.74 16 LS Contribution 368.96 15.07 5.56 5.56 Total: -1.00 -27.78 368.96 -10.03 -37.81 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -7.47 Total: 14.89 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -3.35 Total: -21.82 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.54 Total: -31.93 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.29 Total: -17.22 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -27.78 -10.03 -37.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344362542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.128 kcal (2) G-P(sol) polarization free energy of solvation -27.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds