Wall clock time and date at job start Tue Mar 31 2020 12:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47050 * 2 1 4 4 C 1.53004 * 109.47263 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47838 * 54.97710 * 4 3 2 6 6 C 1.53093 * 109.48166 * 174.99724 * 4 3 2 7 7 C 1.53169 * 109.16299 * 177.58857 * 6 4 3 8 8 H 1.09001 * 109.54475 * 183.14853 * 7 6 4 9 9 C 1.50708 * 109.54260 * 62.97769 * 7 6 4 10 10 O 1.21286 * 119.99689 * 359.97438 * 9 7 6 11 11 N 1.34772 * 120.00299 * 179.97438 * 9 7 6 12 12 C 1.39122 * 120.00450 * 175.81601 * 11 9 7 13 13 C 1.38644 * 120.28293 * 34.52888 * 12 11 9 14 14 C 1.38224 * 120.03434 * 179.97438 * 13 12 11 15 15 C 1.38863 * 120.61511 * 0.04768 * 14 13 12 16 16 C 1.36472 * 120.57726 * 0.02562 * 15 14 13 17 17 C 1.40733 * 119.94092 * 359.65819 * 16 15 14 18 18 C 1.41071 * 120.30195 * 180.34554 * 17 16 15 19 19 H 1.07995 * 120.00072 * 214.96625 * 18 17 16 20 20 C 1.39963 * 119.99895 * 34.96607 * 18 17 16 21 21 N 1.30858 * 119.99817 * 355.67178 * 20 18 17 22 22 Si 1.86799 * 120.00025 * 175.67457 * 20 18 17 23 23 H 1.48503 * 109.46790 * 59.99965 * 22 20 18 24 24 H 1.48498 * 109.47212 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47116 * 299.99908 * 22 20 18 26 26 C 1.53173 * 109.04020 * 303.02096 * 7 6 4 27 27 C 1.53098 * 109.16038 * 56.98131 * 26 7 6 28 28 O 1.42897 * 109.41218 * 302.38730 * 27 26 7 29 29 H 1.09001 * 109.47329 * 60.00308 * 1 2 3 30 30 H 1.08998 * 109.47266 * 300.00229 * 1 2 3 31 31 H 1.08996 * 109.47147 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47329 * 119.99692 * 2 1 3 33 33 H 1.08998 * 109.47266 * 239.99771 * 2 1 3 34 34 H 1.09001 * 109.46803 * 300.00014 * 3 2 1 35 35 H 1.08998 * 109.47272 * 59.99775 * 3 2 1 36 36 H 1.09001 * 109.52316 * 297.49998 * 6 4 3 37 37 H 1.09002 * 109.51714 * 57.68509 * 6 4 3 38 38 H 0.97009 * 119.99622 * 355.81977 * 11 9 7 39 39 H 1.08008 * 119.98286 * 0.02562 * 13 12 11 40 40 H 1.08001 * 119.68871 * 180.02562 * 14 13 12 41 41 H 1.08001 * 119.71384 * 179.97438 * 15 14 13 42 42 H 1.07997 * 120.02542 * 179.97438 * 16 15 14 43 43 H 0.96998 * 119.99585 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.52280 * 176.88402 * 26 7 6 45 45 H 1.08997 * 109.52316 * 297.07635 * 26 7 6 46 46 H 1.08996 * 109.48333 * 62.37811 * 27 26 7 47 47 H 1.09008 * 109.47476 * 182.41138 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9338 0.8527 -0.8407 6 6 4.0806 2.8804 -0.1252 7 6 5.6110 2.8777 -0.0632 8 1 5.9791 3.9031 -0.0961 9 6 6.1617 2.1067 -1.2353 10 8 5.4057 1.6074 -2.0417 11 7 7.4940 1.9722 -1.3873 12 6 8.0008 1.1884 -2.4190 13 6 7.3452 1.1295 -3.6392 14 6 7.8536 0.3495 -4.6608 15 6 9.0201 -0.3816 -4.4789 16 6 9.6848 -0.3433 -3.2877 17 6 9.1920 0.4482 -2.2335 18 6 9.8771 0.4992 -1.0013 19 1 9.3228 0.5861 -0.0786 20 6 11.2751 0.4372 -0.9748 21 7 11.9427 0.2468 -2.0840 22 14 12.1878 0.6260 0.6440 23 1 11.7632 -0.4463 1.5796 24 1 13.6494 0.5220 0.4033 25 1 11.8763 1.9517 1.2363 26 6 6.0570 2.2147 1.2436 27 6 5.4701 0.8026 1.3165 28 8 4.0460 0.8747 1.2225 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.7552 3.3005 -1.0769 37 1 3.6839 3.4807 0.6936 38 1 8.0996 2.4219 -0.7774 39 1 6.4372 1.6941 -3.7919 40 1 7.3386 0.3081 -5.6092 41 1 9.4041 -0.9866 -5.2869 42 1 10.5910 -0.9158 -3.1558 43 1 12.9115 0.2034 -2.0656 44 1 7.1452 2.1587 1.2707 45 1 5.7003 2.8016 2.0900 46 1 5.8590 0.2043 0.4926 47 1 5.7490 0.3416 2.2641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344362542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:52 Heat of formation + Delta-G solvation = -100.779805 kcal Electronic energy + Delta-G solvation = -27476.846711 eV Core-core repulsion = 23815.556850 eV Total energy + Delta-G solvation = -3661.289860 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.85820 -40.03454 -38.68035 -36.01571 -35.48405 -35.42534 -34.62031 -32.13709 -31.46963 -30.24312 -28.24274 -27.17454 -25.80051 -24.02448 -23.41958 -22.88077 -21.91314 -21.79784 -20.31482 -19.18775 -18.15897 -17.60318 -17.41505 -17.19827 -16.83288 -16.17244 -16.02369 -15.70295 -15.41658 -15.34884 -14.81117 -14.75269 -14.42210 -14.31357 -13.90488 -13.71579 -13.56633 -13.35174 -13.24097 -12.99185 -12.82342 -12.79342 -12.71579 -12.43114 -12.23789 -12.14425 -11.96861 -11.83956 -11.63146 -11.58967 -11.52675 -11.22243 -11.05801 -10.90732 -10.52411 -10.10692 -9.23675 -8.79044 -8.44225 -6.35844 0.84223 1.07173 1.42901 1.52837 1.54722 1.81815 2.23960 2.44833 2.81628 2.86511 3.55247 3.68791 3.73806 3.81339 3.91843 4.08757 4.16468 4.25973 4.35073 4.43669 4.50090 4.53649 4.62027 4.69992 4.74579 4.75563 4.80860 4.84874 4.87566 4.97216 5.03350 5.06862 5.08910 5.12621 5.19774 5.24104 5.31166 5.35229 5.39103 5.46251 5.49194 5.79550 5.88065 6.14923 6.18465 6.26886 6.31979 6.65816 6.77420 6.97299 7.03136 7.43163 8.42865 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014791 B = 0.004000 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.562558 B = 6998.941743 C = 8079.212652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C -0.102 4.102 4 C 0.075 3.925 5 H 0.047 0.953 6 C -0.121 4.121 7 C -0.105 4.105 8 H 0.128 0.872 9 C 0.499 3.501 10 O -0.567 6.567 11 N -0.636 5.636 12 C 0.022 3.978 13 C -0.108 4.108 14 C -0.221 4.221 15 C -0.126 4.126 16 C -0.165 4.165 17 C 0.068 3.932 18 C -0.488 4.488 19 H 0.081 0.919 20 C 0.032 3.968 21 N -0.839 5.839 22 Si 0.984 3.016 23 H -0.263 1.263 24 H -0.277 1.277 25 H -0.252 1.252 26 C -0.139 4.139 27 C 0.056 3.944 28 O -0.387 6.387 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.411 0.589 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.284 0.716 44 H 0.085 0.915 45 H 0.111 0.889 46 H 0.015 0.985 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.946 6.111 8.942 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C -0.139 4.139 4 C 0.018 3.982 5 H 0.065 0.935 6 C -0.158 4.158 7 C -0.126 4.126 8 H 0.146 0.854 9 C 0.288 3.712 10 O -0.447 6.447 11 N -0.279 5.279 12 C -0.073 4.073 13 C -0.128 4.128 14 C -0.240 4.240 15 C -0.145 4.145 16 C -0.186 4.186 17 C 0.064 3.936 18 C -0.519 4.519 19 H 0.099 0.901 20 C -0.181 4.181 21 N -0.467 5.467 22 Si 0.805 3.195 23 H -0.188 1.188 24 H -0.202 1.202 25 H -0.176 1.176 26 C -0.177 4.177 27 C -0.021 4.021 28 O -0.306 6.306 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.248 0.752 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.130 0.870 46 H 0.033 0.967 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.382 5.693 8.469 16.045 hybrid contribution 1.428 -0.088 -0.024 1.431 sum -10.954 5.605 8.445 14.924 Atomic orbital electron populations 1.21735 0.94271 1.02003 1.02293 1.21458 0.96903 0.96667 1.01111 1.21586 0.91510 0.97654 1.03184 1.22398 0.95543 0.93758 0.86496 0.93527 1.21961 0.92516 0.97602 1.03767 1.21488 0.97702 1.01283 0.92139 0.85411 1.21405 0.81657 0.80742 0.87418 1.90586 1.58133 1.50046 1.45973 1.42950 1.06972 1.47466 1.30507 1.17984 1.00050 1.00492 0.88776 1.20824 0.99344 1.00525 0.92140 1.20678 0.99293 1.04923 0.99150 1.20766 0.95914 1.00326 0.97449 1.21207 1.01392 1.01658 0.94311 1.17797 0.91320 0.89457 0.94986 1.19470 0.91880 1.47176 0.93355 0.90055 1.26742 0.98569 0.91627 1.01168 1.69854 1.09496 1.37432 1.29884 0.85205 0.76739 0.80234 0.77285 1.18760 1.20211 1.17562 1.22189 1.02075 0.96706 0.96733 1.22592 0.81135 0.96566 1.01760 1.87837 1.20848 1.82988 1.38959 0.92323 0.91824 0.92505 0.92525 0.93966 0.90058 0.90107 0.90718 0.87994 0.75225 0.87250 0.86877 0.87205 0.86756 0.90575 0.89666 0.87049 0.96706 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.91 71.98 0.71 -1.88 16 2 C -0.12 -2.90 5.83 30.59 0.18 -2.72 16 3 C -0.10 -2.32 4.92 30.60 0.15 -2.17 16 4 C 0.08 2.12 2.35 30.63 0.07 2.20 16 5 H 0.05 1.72 5.81 -2.39 -0.01 1.70 16 6 C -0.12 -2.86 4.56 30.68 0.14 -2.72 16 7 C -0.11 -2.62 3.03 -11.42 -0.03 -2.66 16 8 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 9 C 0.50 17.91 5.67 87.66 0.50 18.41 16 10 O -0.57 -24.23 11.25 -3.05 -0.03 -24.27 16 11 N -0.64 -25.02 4.81 -302.28 -1.45 -26.47 16 12 C 0.02 1.04 6.34 38.88 0.25 1.29 16 13 C -0.11 -5.22 8.69 22.36 0.19 -5.02 16 14 C -0.22 -10.30 10.04 22.42 0.22 -10.08 16 15 C -0.13 -6.05 9.97 22.01 0.22 -5.83 16 16 C -0.17 -8.74 8.61 22.47 0.19 -8.54 16 17 C 0.07 3.55 5.56 -21.18 -0.12 3.43 16 18 C -0.49 -24.18 8.22 23.38 0.19 -23.99 16 19 H 0.08 3.75 7.63 -2.91 -0.02 3.73 16 20 C 0.03 1.51 5.42 85.26 0.46 1.97 16 21 N -0.84 -42.41 10.62 21.83 0.23 -42.18 16 22 Si 0.98 35.76 29.56 68.60 2.03 37.79 16 23 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 24 H -0.28 -9.91 7.11 99.48 0.71 -9.21 16 25 H -0.25 -8.52 7.11 99.48 0.71 -7.81 16 26 C -0.14 -3.12 5.57 30.68 0.17 -2.95 16 27 C 0.06 1.56 6.62 72.01 0.48 2.04 16 28 O -0.39 -11.20 9.94 -148.98 -1.48 -12.68 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 1.43 7.82 -2.39 -0.02 1.41 16 33 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.83 8.02 -2.39 -0.02 1.82 16 37 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.41 14.38 7.66 -92.70 -0.71 13.67 16 39 H 0.11 5.21 6.20 -2.91 -0.02 5.19 16 40 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 41 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 42 H 0.11 6.30 6.16 -2.91 -0.02 6.28 16 43 H 0.28 13.17 8.30 -92.71 -0.77 12.41 16 44 H 0.08 1.87 7.63 -2.39 -0.02 1.85 16 45 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.01 0.52 7.38 -2.39 -0.02 0.50 16 47 H 0.11 2.62 8.14 -2.38 -0.02 2.61 16 Total: -1.00 -62.52 368.96 3.53 -58.99 By element: Atomic # 1 Polarization: 47.77 SS G_CDS: 0.26 Total: 48.02 kcal Atomic # 6 Polarization: -43.18 SS G_CDS: 3.98 Total: -39.20 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -1.22 Total: -68.65 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -1.52 Total: -36.95 kcal Atomic # 14 Polarization: 35.76 SS G_CDS: 2.03 Total: 37.79 kcal Total: -62.52 3.53 -58.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344362542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.789 kcal (2) G-P(sol) polarization free energy of solvation -62.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds