Wall clock time and date at job start Tue Mar 31 2020 12:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47209 * 2 1 4 4 C 1.53006 * 109.47030 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47681 * 54.98183 * 4 3 2 6 6 C 1.53089 * 109.47751 * 175.00156 * 4 3 2 7 7 C 1.53183 * 109.15998 * 177.59496 * 6 4 3 8 8 H 1.09000 * 109.54294 * 62.88605 * 7 6 4 9 9 C 1.50704 * 109.54188 * 183.15154 * 7 6 4 10 10 O 1.21288 * 120.00132 * 359.97438 * 9 7 6 11 11 N 1.34771 * 119.99909 * 180.02562 * 9 7 6 12 12 C 1.39129 * 120.00041 * 175.81117 * 11 9 7 13 13 C 1.38646 * 120.28204 * 34.55837 * 12 11 9 14 14 C 1.38229 * 120.03003 * 179.97438 * 13 12 11 15 15 C 1.38866 * 120.61432 * 0.03461 * 14 13 12 16 16 C 1.36457 * 120.58144 * 0.02562 * 15 14 13 17 17 C 1.40737 * 119.94279 * 359.65092 * 16 15 14 18 18 C 1.41068 * 120.30480 * 180.34577 * 17 16 15 19 19 H 1.08003 * 120.00290 * 214.98337 * 18 17 16 20 20 C 1.39958 * 119.99823 * 34.98690 * 18 17 16 21 21 N 1.30854 * 120.00279 * 355.63801 * 20 18 17 22 22 Si 1.86802 * 119.99895 * 175.63798 * 20 18 17 23 23 H 1.48493 * 109.47186 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47065 * 120.00000 * 22 20 18 25 25 H 1.48506 * 109.47155 * 239.99854 * 22 20 18 26 26 C 1.53173 * 109.03786 * 303.01596 * 7 6 4 27 27 C 1.53102 * 109.15880 * 56.98154 * 26 7 6 28 28 O 1.42902 * 109.48048 * 294.94524 * 4 3 2 29 29 H 1.09000 * 109.47482 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47372 * 300.00109 * 1 2 3 31 31 H 1.09001 * 109.47142 * 59.99837 * 1 2 3 32 32 H 1.08995 * 109.47372 * 239.99891 * 2 1 3 33 33 H 1.09001 * 109.47142 * 120.00163 * 2 1 3 34 34 H 1.09006 * 109.47241 * 60.00440 * 3 2 1 35 35 H 1.08997 * 109.47452 * 299.99684 * 3 2 1 36 36 H 1.08995 * 109.52561 * 57.69220 * 6 4 3 37 37 H 1.09005 * 109.57639 * 297.52560 * 6 4 3 38 38 H 0.96996 * 120.00314 * 355.80564 * 11 9 7 39 39 H 1.08000 * 119.98546 * 359.97438 * 13 12 11 40 40 H 1.08000 * 119.69124 * 180.02562 * 14 13 12 41 41 H 1.08003 * 119.70788 * 179.97438 * 15 14 13 42 42 H 1.07998 * 120.03330 * 179.97438 * 16 15 14 43 43 H 0.96998 * 120.00426 * 179.97438 * 21 20 18 44 44 H 1.08996 * 109.52568 * 176.88547 * 26 7 6 45 45 H 1.08999 * 109.52653 * 297.08081 * 26 7 6 46 46 H 1.09001 * 109.47654 * 182.40967 * 27 26 7 47 47 H 1.09000 * 109.48777 * 62.38131 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9338 0.8526 -0.8407 6 6 4.0806 2.8802 -0.1251 7 6 5.6112 2.8774 -0.0633 8 1 6.0093 2.3185 -0.9102 9 6 6.1201 4.2952 -0.1085 10 8 5.3371 5.2185 -0.1834 11 7 7.4453 4.5371 -0.0668 12 6 7.9192 5.8388 -0.1963 13 6 7.1960 6.9011 0.3240 14 6 7.6720 8.1922 0.1929 15 6 8.8731 8.4404 -0.4583 16 6 9.6045 7.4137 -0.9809 17 6 9.1458 6.0892 -0.8551 18 6 9.8994 5.0214 -1.3860 19 1 9.3973 4.1628 -1.8070 20 6 11.2979 5.0746 -1.3672 21 7 11.9060 6.1500 -0.9359 22 14 12.2963 3.6104 -1.9578 23 1 11.3776 2.5272 -2.3910 24 1 13.1504 4.0224 -3.1007 25 1 13.1547 3.1176 -0.8507 26 6 6.0572 2.2144 1.2435 27 6 5.4702 0.8023 1.3164 28 8 4.0461 0.8744 1.2225 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8901 35 1 1.6767 1.9563 -0.8900 36 1 3.6841 3.4805 0.6937 37 1 3.7553 3.3014 -1.0764 38 1 8.0686 3.8038 0.0535 39 1 6.2603 6.7198 0.8319 40 1 7.1044 9.0156 0.6006 41 1 9.2311 9.4550 -0.5528 42 1 10.5373 7.6169 -1.4859 43 1 12.8752 6.1868 -0.9225 44 1 7.1454 2.1583 1.2706 45 1 5.7006 2.8012 2.0900 46 1 5.7491 0.3412 2.2639 47 1 5.8590 0.2038 0.4925 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344362543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:58 Heat of formation + Delta-G solvation = -91.025015 kcal Electronic energy + Delta-G solvation = -26624.519994 eV Core-core repulsion = 22963.653133 eV Total energy + Delta-G solvation = -3660.866861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.28097 -38.92307 -37.17916 -35.18766 -33.83264 -33.70415 -33.46192 -31.33199 -29.60626 -28.56121 -27.37779 -25.50342 -24.72099 -22.94654 -21.88373 -21.20621 -20.87888 -20.19427 -19.12426 -17.45497 -16.86576 -16.62989 -16.12113 -15.80900 -15.23716 -14.96687 -14.77430 -14.55666 -14.19013 -14.02952 -13.75558 -13.38370 -13.14183 -12.86722 -12.77385 -12.52368 -12.35113 -12.24367 -11.77196 -11.70802 -11.47206 -11.34785 -11.25365 -11.19423 -11.10121 -10.93086 -10.77873 -10.66581 -10.48873 -10.34405 -10.11640 -9.79590 -9.66656 -9.31461 -9.14631 -8.77906 -7.32344 -6.97496 -6.64500 -4.47171 2.59063 2.85247 3.02006 3.05056 3.16799 3.39468 3.66449 3.86301 3.88492 4.50539 4.63474 4.72963 4.78795 4.85363 4.88157 4.96506 5.10350 5.12766 5.31376 5.40664 5.49501 5.51081 5.55180 5.59534 5.63453 5.69617 5.74852 5.83787 5.88565 6.00301 6.07675 6.11206 6.19444 6.31138 6.31924 6.50831 6.56104 6.94256 7.05786 7.16083 7.18629 7.27571 7.65280 7.71113 7.97761 8.07477 8.11311 8.40905 8.55950 8.81266 8.84020 9.02652 10.20617 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.003231 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.593063 B = 8664.975978 C = 9960.878036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.111 4.111 4 C 0.090 3.910 5 H 0.057 0.943 6 C -0.127 4.127 7 C -0.108 4.108 8 H 0.095 0.905 9 C 0.504 3.496 10 O -0.539 6.539 11 N -0.637 5.637 12 C 0.023 3.977 13 C -0.094 4.094 14 C -0.216 4.216 15 C -0.120 4.120 16 C -0.139 4.139 17 C 0.095 3.905 18 C -0.470 4.470 19 H 0.074 0.926 20 C 0.073 3.927 21 N -0.808 5.808 22 Si 0.912 3.088 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.149 4.149 27 C 0.065 3.935 28 O -0.378 6.378 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.402 0.598 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.131 0.869 43 H 0.278 0.722 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.096 0.904 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.139 -12.207 2.021 16.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.149 4.149 4 C 0.033 3.967 5 H 0.075 0.925 6 C -0.165 4.165 7 C -0.129 4.129 8 H 0.113 0.887 9 C 0.290 3.710 10 O -0.417 6.417 11 N -0.278 5.278 12 C -0.071 4.071 13 C -0.114 4.114 14 C -0.236 4.236 15 C -0.139 4.139 16 C -0.159 4.159 17 C 0.091 3.909 18 C -0.501 4.501 19 H 0.092 0.908 20 C -0.143 4.143 21 N -0.435 5.435 22 Si 0.737 3.263 23 H -0.187 1.187 24 H -0.199 1.199 25 H -0.200 1.200 26 C -0.187 4.187 27 C -0.012 4.012 28 O -0.297 6.297 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.238 0.762 39 H 0.127 0.873 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.148 0.852 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.114 0.886 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.587 -11.560 2.133 16.506 hybrid contribution 1.272 -0.749 -0.415 1.534 sum -10.315 -12.309 1.718 16.151 Atomic orbital electron populations 1.21782 0.96070 1.01415 1.01750 1.21481 0.95472 0.96656 1.02342 1.21635 0.92657 0.97575 1.03018 1.22177 0.94640 0.92951 0.86946 0.92482 1.22009 0.93330 0.96844 1.04311 1.21355 0.97412 0.94522 0.99643 0.88718 1.20430 0.82713 0.90614 0.77225 1.90642 1.55726 1.45580 1.49744 1.42903 1.06391 1.08961 1.69573 1.17863 0.99762 0.82686 1.06750 1.20659 0.98981 0.92106 0.99659 1.20387 0.98694 0.95340 1.09139 1.20547 0.95374 0.97757 1.00218 1.21181 1.00769 0.91236 1.02754 1.17481 0.90187 0.93440 0.89766 1.19308 0.90753 1.03880 1.36131 0.90784 1.25854 0.98454 0.96937 0.93031 1.69771 1.10657 1.26903 1.36125 0.86195 0.79711 0.81389 0.78969 1.18666 1.19945 1.19957 1.22218 1.01717 0.97391 0.97375 1.22539 0.81107 0.95337 1.02180 1.87910 1.20790 1.82359 1.38680 0.92935 0.92743 0.92873 0.92343 0.91259 0.90980 0.90528 0.90171 0.90270 0.76246 0.87285 0.89165 0.89303 0.85179 0.91104 0.90099 0.90375 0.88633 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.12 -1.05 5.83 -26.73 -0.16 -1.21 16 3 C -0.11 -1.07 4.92 -26.73 -0.13 -1.20 16 4 C 0.09 0.99 2.64 -26.68 -0.07 0.92 16 5 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 6 C -0.13 -1.65 4.02 -26.59 -0.11 -1.76 16 7 C -0.11 -1.48 2.62 -91.59 -0.24 -1.72 16 8 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 9 C 0.50 9.42 6.99 -10.99 -0.08 9.35 16 10 O -0.54 -11.91 13.38 5.55 0.07 -11.83 16 11 N -0.64 -12.79 4.89 -9.47 -0.05 -12.84 16 12 C 0.02 0.56 6.34 -83.17 -0.53 0.03 16 13 C -0.09 -2.27 8.69 -39.43 -0.34 -2.61 16 14 C -0.22 -5.05 10.04 -39.35 -0.39 -5.45 16 15 C -0.12 -2.86 9.96 -39.99 -0.40 -3.26 16 16 C -0.14 -3.59 8.61 -39.28 -0.34 -3.93 16 17 C 0.09 2.44 5.56 -106.65 -0.59 1.85 16 18 C -0.47 -11.66 8.22 -37.87 -0.31 -11.97 16 19 H 0.07 1.75 7.63 -52.48 -0.40 1.35 16 20 C 0.07 1.74 5.42 -17.32 -0.09 1.65 16 21 N -0.81 -20.16 10.62 55.55 0.59 -19.57 16 22 Si 0.91 17.87 29.56 -169.99 -5.03 12.85 16 23 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 26 C -0.15 -1.75 5.29 -26.59 -0.14 -1.89 16 27 C 0.07 0.66 6.84 37.21 0.25 0.91 16 28 O -0.38 -4.44 9.94 -35.23 -0.35 -4.79 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.65 7.82 -51.93 -0.41 0.25 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.17 8.02 -51.93 -0.42 0.75 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.40 7.24 7.50 -40.82 -0.31 6.94 16 39 H 0.11 2.61 6.20 -52.49 -0.33 2.29 16 40 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 42 H 0.13 3.45 6.16 -52.49 -0.32 3.12 16 43 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 44 H 0.08 0.88 7.60 -51.93 -0.39 0.48 16 45 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 374.69 15.07 5.65 5.65 Total: -1.00 -28.90 374.69 -10.04 -38.94 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -7.63 Total: 12.67 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -3.30 Total: -21.07 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.54 Total: -32.41 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.28 Total: -16.62 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.90 -10.04 -38.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344362543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.087 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds