Wall clock time and date at job start Tue Mar 31 2020 12:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47209 * 2 1 4 4 C 1.53006 * 109.47030 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47681 * 54.98183 * 4 3 2 6 6 C 1.53089 * 109.47751 * 175.00156 * 4 3 2 7 7 C 1.53183 * 109.15998 * 177.59496 * 6 4 3 8 8 H 1.09000 * 109.54294 * 62.88605 * 7 6 4 9 9 C 1.50704 * 109.54188 * 183.15154 * 7 6 4 10 10 O 1.21288 * 120.00132 * 359.97438 * 9 7 6 11 11 N 1.34771 * 119.99909 * 180.02562 * 9 7 6 12 12 C 1.39129 * 120.00041 * 175.81117 * 11 9 7 13 13 C 1.38646 * 120.28204 * 34.55837 * 12 11 9 14 14 C 1.38229 * 120.03003 * 179.97438 * 13 12 11 15 15 C 1.38866 * 120.61432 * 0.03461 * 14 13 12 16 16 C 1.36457 * 120.58144 * 0.02562 * 15 14 13 17 17 C 1.40737 * 119.94279 * 359.65092 * 16 15 14 18 18 C 1.41068 * 120.30480 * 180.34577 * 17 16 15 19 19 H 1.08003 * 120.00290 * 214.98337 * 18 17 16 20 20 C 1.39958 * 119.99823 * 34.98690 * 18 17 16 21 21 N 1.30854 * 120.00279 * 355.63801 * 20 18 17 22 22 Si 1.86802 * 119.99895 * 175.63798 * 20 18 17 23 23 H 1.48493 * 109.47186 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47065 * 120.00000 * 22 20 18 25 25 H 1.48506 * 109.47155 * 239.99854 * 22 20 18 26 26 C 1.53173 * 109.03786 * 303.01596 * 7 6 4 27 27 C 1.53102 * 109.15880 * 56.98154 * 26 7 6 28 28 O 1.42902 * 109.48048 * 294.94524 * 4 3 2 29 29 H 1.09000 * 109.47482 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47372 * 300.00109 * 1 2 3 31 31 H 1.09001 * 109.47142 * 59.99837 * 1 2 3 32 32 H 1.08995 * 109.47372 * 239.99891 * 2 1 3 33 33 H 1.09001 * 109.47142 * 120.00163 * 2 1 3 34 34 H 1.09006 * 109.47241 * 60.00440 * 3 2 1 35 35 H 1.08997 * 109.47452 * 299.99684 * 3 2 1 36 36 H 1.08995 * 109.52561 * 57.69220 * 6 4 3 37 37 H 1.09005 * 109.57639 * 297.52560 * 6 4 3 38 38 H 0.96996 * 120.00314 * 355.80564 * 11 9 7 39 39 H 1.08000 * 119.98546 * 359.97438 * 13 12 11 40 40 H 1.08000 * 119.69124 * 180.02562 * 14 13 12 41 41 H 1.08003 * 119.70788 * 179.97438 * 15 14 13 42 42 H 1.07998 * 120.03330 * 179.97438 * 16 15 14 43 43 H 0.96998 * 120.00426 * 179.97438 * 21 20 18 44 44 H 1.08996 * 109.52568 * 176.88547 * 26 7 6 45 45 H 1.08999 * 109.52653 * 297.08081 * 26 7 6 46 46 H 1.09001 * 109.47654 * 182.40967 * 27 26 7 47 47 H 1.09000 * 109.48777 * 62.38131 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9338 0.8526 -0.8407 6 6 4.0806 2.8802 -0.1251 7 6 5.6112 2.8774 -0.0633 8 1 6.0093 2.3185 -0.9102 9 6 6.1201 4.2952 -0.1085 10 8 5.3371 5.2185 -0.1834 11 7 7.4453 4.5371 -0.0668 12 6 7.9192 5.8388 -0.1963 13 6 7.1960 6.9011 0.3240 14 6 7.6720 8.1922 0.1929 15 6 8.8731 8.4404 -0.4583 16 6 9.6045 7.4137 -0.9809 17 6 9.1458 6.0892 -0.8551 18 6 9.8994 5.0214 -1.3860 19 1 9.3973 4.1628 -1.8070 20 6 11.2979 5.0746 -1.3672 21 7 11.9060 6.1500 -0.9359 22 14 12.2963 3.6104 -1.9578 23 1 11.3776 2.5272 -2.3910 24 1 13.1504 4.0224 -3.1007 25 1 13.1547 3.1176 -0.8507 26 6 6.0572 2.2144 1.2435 27 6 5.4702 0.8023 1.3164 28 8 4.0461 0.8744 1.2225 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8901 35 1 1.6767 1.9563 -0.8900 36 1 3.6841 3.4805 0.6937 37 1 3.7553 3.3014 -1.0764 38 1 8.0686 3.8038 0.0535 39 1 6.2603 6.7198 0.8319 40 1 7.1044 9.0156 0.6006 41 1 9.2311 9.4550 -0.5528 42 1 10.5373 7.6169 -1.4859 43 1 12.8752 6.1868 -0.9225 44 1 7.1454 2.1583 1.2706 45 1 5.7006 2.8012 2.0900 46 1 5.7491 0.3412 2.2639 47 1 5.8590 0.2038 0.4925 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344362543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:57 Heat of formation + Delta-G solvation = -105.560922 kcal Electronic energy + Delta-G solvation = -26625.150318 eV Core-core repulsion = 22963.653133 eV Total energy + Delta-G solvation = -3661.497185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.61820 -40.18621 -38.88278 -35.95890 -35.49807 -35.46073 -34.64981 -32.16188 -31.48400 -30.30372 -28.27345 -27.19957 -25.96454 -23.84863 -23.40085 -22.66795 -21.90862 -21.52437 -20.58874 -19.24884 -18.39819 -17.81254 -17.40765 -16.97220 -16.84789 -16.16350 -15.95131 -15.70301 -15.36777 -15.25148 -14.98449 -14.88828 -14.53084 -14.22098 -14.07204 -13.72519 -13.62992 -13.57310 -13.08926 -13.00230 -12.83250 -12.74080 -12.51057 -12.31512 -12.29565 -12.12014 -11.94501 -11.85963 -11.61359 -11.57382 -11.46790 -11.23854 -11.09026 -10.92285 -10.67012 -10.28499 -9.25045 -8.80872 -8.45447 -6.36985 0.81837 1.05194 1.42941 1.51582 1.56976 1.79753 2.23680 2.38592 2.80612 2.87453 3.55719 3.62638 3.68138 3.77524 3.91355 4.10856 4.14917 4.29808 4.31866 4.38062 4.48197 4.51652 4.60098 4.62742 4.69336 4.75210 4.78249 4.82811 4.84636 4.99755 5.05867 5.08450 5.10128 5.12268 5.21082 5.25082 5.32152 5.34859 5.41927 5.44337 5.52725 5.78381 5.86588 6.13812 6.16942 6.25753 6.32994 6.64481 6.75617 6.95778 7.01642 7.39750 8.42370 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.003231 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.593063 B = 8664.975978 C = 9960.878036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.111 4.111 4 C 0.096 3.904 5 H 0.073 0.927 6 C -0.123 4.123 7 C -0.099 4.099 8 H 0.117 0.883 9 C 0.501 3.499 10 O -0.576 6.576 11 N -0.635 5.635 12 C 0.018 3.982 13 C -0.109 4.109 14 C -0.220 4.220 15 C -0.124 4.124 16 C -0.164 4.164 17 C 0.067 3.933 18 C -0.488 4.488 19 H 0.081 0.919 20 C 0.031 3.969 21 N -0.839 5.839 22 Si 0.987 3.013 23 H -0.252 1.252 24 H -0.273 1.273 25 H -0.269 1.269 26 C -0.145 4.145 27 C 0.066 3.934 28 O -0.390 6.390 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.412 0.588 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.284 0.716 44 H 0.092 0.908 45 H 0.061 0.939 46 H 0.114 0.886 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.144 -14.745 1.678 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.149 4.149 4 C 0.038 3.962 5 H 0.091 0.909 6 C -0.161 4.161 7 C -0.120 4.120 8 H 0.135 0.865 9 C 0.290 3.710 10 O -0.456 6.456 11 N -0.278 5.278 12 C -0.076 4.076 13 C -0.129 4.129 14 C -0.240 4.240 15 C -0.143 4.143 16 C -0.184 4.184 17 C 0.063 3.937 18 C -0.518 4.518 19 H 0.099 0.901 20 C -0.182 4.182 21 N -0.466 5.466 22 Si 0.808 3.192 23 H -0.175 1.175 24 H -0.199 1.199 25 H -0.193 1.193 26 C -0.183 4.183 27 C -0.011 4.011 28 O -0.310 6.310 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.249 0.751 39 H 0.125 0.875 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.080 0.920 46 H 0.132 0.868 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.606 -14.114 1.802 18.362 hybrid contribution 1.236 0.127 -0.281 1.274 sum -10.371 -13.987 1.521 17.479 Atomic orbital electron populations 1.21777 0.95330 1.02020 1.01835 1.21436 0.96115 0.95672 1.02281 1.21653 0.91921 0.98417 1.02896 1.22185 0.95319 0.91320 0.87328 0.90887 1.21986 0.92791 0.98284 1.03076 1.21389 0.97735 0.91138 1.01728 0.86496 1.21353 0.81717 0.92462 0.75450 1.90617 1.56424 1.47424 1.51124 1.42925 1.07270 1.07856 1.69715 1.18013 0.99285 0.84459 1.05858 1.20818 0.99088 0.92800 1.00221 1.20690 0.98699 0.95905 1.08688 1.20775 0.95294 0.98538 0.99708 1.21212 1.00936 0.92167 1.04088 1.17828 0.91184 0.93956 0.90744 1.19520 0.91580 1.03938 1.36788 0.90137 1.26758 0.99131 0.99707 0.92606 1.69856 1.11309 1.28849 1.36579 0.85066 0.77946 0.77817 0.78326 1.17473 1.19871 1.19344 1.22228 1.02526 0.98227 0.95345 1.22682 0.80200 0.94129 1.04049 1.87913 1.21812 1.82169 1.39075 0.92081 0.93047 0.92442 0.91570 0.92072 0.92035 0.89807 0.92382 0.90899 0.75099 0.87535 0.86773 0.86989 0.86589 0.90520 0.88943 0.92014 0.86826 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 71.98 0.71 -1.32 16 2 C -0.12 -1.81 5.83 30.59 0.18 -1.63 16 3 C -0.11 -1.99 4.92 30.60 0.15 -1.84 16 4 C 0.10 1.92 2.64 30.63 0.08 2.00 16 5 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 6 C -0.12 -3.12 4.02 30.68 0.12 -3.00 16 7 C -0.10 -2.58 2.62 -11.42 -0.03 -2.61 16 8 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 9 C 0.50 18.74 6.99 87.66 0.61 19.36 16 10 O -0.58 -25.93 13.38 -3.06 -0.04 -25.97 16 11 N -0.64 -25.52 4.89 -302.27 -1.48 -27.00 16 12 C 0.02 0.90 6.34 38.88 0.25 1.15 16 13 C -0.11 -5.35 8.69 22.37 0.19 -5.16 16 14 C -0.22 -10.34 10.04 22.42 0.23 -10.12 16 15 C -0.12 -5.97 9.96 22.00 0.22 -5.75 16 16 C -0.16 -8.64 8.61 22.46 0.19 -8.45 16 17 C 0.07 3.49 5.56 -21.18 -0.12 3.37 16 18 C -0.49 -24.29 8.22 23.38 0.19 -24.10 16 19 H 0.08 3.77 7.63 -2.91 -0.02 3.75 16 20 C 0.03 1.46 5.42 85.26 0.46 1.92 16 21 N -0.84 -42.25 10.62 21.83 0.23 -42.02 16 22 Si 0.99 35.77 29.56 68.60 2.03 37.80 16 23 H -0.25 -8.57 7.11 99.48 0.71 -7.87 16 24 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 25 H -0.27 -9.43 7.11 99.48 0.71 -8.72 16 26 C -0.15 -3.16 5.29 30.69 0.16 -3.00 16 27 C 0.07 1.14 6.84 72.02 0.49 1.63 16 28 O -0.39 -8.34 9.94 -148.98 -1.48 -9.82 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 1.05 7.82 -2.39 -0.02 1.03 16 34 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.72 8.02 -2.39 -0.02 1.70 16 37 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.41 14.59 7.50 -92.71 -0.70 13.90 16 39 H 0.11 5.23 6.20 -2.91 -0.02 5.21 16 40 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 41 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 42 H 0.12 6.36 6.16 -2.91 -0.02 6.34 16 43 H 0.28 13.05 8.30 -92.71 -0.77 12.28 16 44 H 0.09 1.80 7.60 -2.39 -0.02 1.78 16 45 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -63.24 374.69 3.62 -59.62 By element: Atomic # 1 Polarization: 44.68 SS G_CDS: 0.26 Total: 44.94 kcal Atomic # 6 Polarization: -41.65 SS G_CDS: 4.10 Total: -37.55 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: -1.25 Total: -69.02 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -1.52 Total: -35.79 kcal Atomic # 14 Polarization: 35.77 SS G_CDS: 2.03 Total: 37.80 kcal Total: -63.24 3.62 -59.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344362543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.940 kcal (2) G-P(sol) polarization free energy of solvation -63.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds