Wall clock time and date at job start Tue Mar 31 2020 12:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47203 * 2 1 4 4 C 1.53003 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.47897 * 304.97937 * 4 3 2 6 6 C 1.53085 * 109.48932 * 184.95213 * 4 3 2 7 7 C 1.53186 * 109.16115 * 182.40278 * 6 4 3 8 8 H 1.08999 * 109.61647 * 297.06742 * 7 6 4 9 9 C 1.50703 * 109.54301 * 176.84891 * 7 6 4 10 10 O 1.21281 * 119.99734 * 0.44113 * 9 7 6 11 11 N 1.34773 * 119.99906 * 180.44666 * 9 7 6 12 12 C 1.39128 * 119.99821 * 185.57968 * 11 9 7 13 13 C 1.38639 * 120.28394 * 331.21907 * 12 11 9 14 14 C 1.38227 * 120.03328 * 180.02562 * 13 12 11 15 15 C 1.38863 * 120.61316 * 359.97320 * 14 13 12 16 16 C 1.36467 * 120.57989 * 359.76096 * 15 14 13 17 17 C 1.40733 * 119.93818 * 0.52104 * 16 15 14 18 18 C 1.41076 * 120.29764 * 179.73770 * 17 16 15 19 19 H 1.08002 * 120.00071 * 155.31430 * 18 17 16 20 20 C 1.39962 * 119.99903 * 335.30921 * 18 17 16 21 21 N 1.30856 * 119.99909 * 331.23117 * 20 18 17 22 22 Si 1.86796 * 119.99838 * 151.23605 * 20 18 17 23 23 H 1.48504 * 109.47038 * 179.97438 * 22 20 18 24 24 H 1.48499 * 109.47301 * 299.99734 * 22 20 18 25 25 H 1.48502 * 109.47257 * 60.00046 * 22 20 18 26 26 C 1.53175 * 109.03550 * 56.97667 * 7 6 4 27 27 C 1.53088 * 109.16766 * 303.02398 * 26 7 6 28 28 O 1.42898 * 109.41655 * 57.60228 * 27 26 7 29 29 H 1.09000 * 109.47056 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46718 * 299.99723 * 1 2 3 31 31 H 1.08994 * 109.47260 * 59.99718 * 1 2 3 32 32 H 1.09002 * 109.46718 * 240.00277 * 2 1 3 33 33 H 1.08999 * 109.47575 * 120.00638 * 2 1 3 34 34 H 1.09002 * 109.47057 * 60.00485 * 3 2 1 35 35 H 1.08999 * 109.47376 * 300.00760 * 3 2 1 36 36 H 1.09000 * 109.52906 * 62.49778 * 6 4 3 37 37 H 1.09004 * 109.52541 * 302.30616 * 6 4 3 38 38 H 0.97002 * 120.00180 * 5.57775 * 11 9 7 39 39 H 1.07996 * 119.98708 * 0.03878 * 13 12 11 40 40 H 1.07998 * 119.69279 * 180.02562 * 14 13 12 41 41 H 1.08008 * 119.71007 * 180.02562 * 15 14 13 42 42 H 1.07995 * 120.02866 * 180.25264 * 16 15 14 43 43 H 0.96994 * 119.99696 * 353.79005 * 21 20 18 44 44 H 1.09005 * 109.52043 * 62.92775 * 26 7 6 45 45 H 1.09000 * 109.51855 * 183.10941 * 26 7 6 46 46 H 1.08997 * 109.48285 * 177.59136 * 27 26 7 47 47 H 1.09006 * 109.47598 * 297.62532 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9339 0.8532 0.8411 6 6 4.0809 2.8802 0.1239 7 6 5.6115 2.8772 0.0621 8 1 6.0108 2.3199 0.9095 9 6 6.1206 4.2949 0.1062 10 8 5.3381 5.2179 0.1879 11 7 7.4454 4.5370 0.0548 12 6 7.9220 5.8346 0.2120 13 6 7.1408 6.9167 -0.1634 14 6 7.6197 8.2037 -0.0054 15 6 8.8817 8.4280 0.5289 16 6 9.6695 7.3816 0.9118 17 6 9.2081 6.0612 0.7560 18 6 10.0184 4.9736 1.1442 19 1 9.5653 4.0287 1.4053 20 6 11.4097 5.1191 1.1908 21 7 12.0054 5.9709 0.3958 22 14 12.4160 4.0974 2.3877 23 1 13.8543 4.4364 2.2403 24 1 11.9782 4.3882 3.7766 25 1 12.2157 2.6549 2.0973 26 6 6.0574 2.2129 -1.2440 27 6 5.4702 0.8009 -1.3158 28 8 4.0461 0.8733 -1.2219 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.7556 3.3013 1.0752 37 1 3.6844 3.4800 -0.6954 38 1 8.0666 3.8066 -0.0919 39 1 6.1575 6.7541 -0.5794 40 1 7.0063 9.0426 -0.2993 41 1 9.2411 9.4397 0.6463 42 1 10.6479 7.5664 1.3300 43 1 11.4961 6.4351 -0.2867 44 1 5.7009 2.7991 -2.0911 45 1 7.1456 2.1567 -1.2710 46 1 5.7490 0.3389 -2.2629 47 1 5.8589 0.2033 -0.4912 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344362544.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:02 Heat of formation + Delta-G solvation = -96.039913 kcal Electronic energy + Delta-G solvation = -26636.603229 eV Core-core repulsion = 22975.518906 eV Total energy + Delta-G solvation = -3661.084323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.34400 -39.00821 -37.35077 -35.21026 -34.00081 -33.91499 -33.52580 -31.35788 -29.40741 -28.67592 -27.40461 -25.40712 -24.71861 -22.97693 -21.95973 -21.26217 -20.96326 -20.32961 -19.20184 -18.04047 -16.95673 -16.65780 -16.14813 -15.84606 -15.06815 -14.97858 -14.71360 -14.55400 -14.21009 -14.06461 -13.82044 -13.68961 -13.22577 -12.90293 -12.69585 -12.65850 -12.35512 -12.26059 -12.02068 -11.73475 -11.52408 -11.49523 -11.32803 -11.12538 -11.05399 -10.80252 -10.74786 -10.68915 -10.48202 -10.38109 -10.32817 -9.75585 -9.68991 -9.35879 -9.02063 -8.73991 -7.65410 -7.42466 -6.97077 -4.49276 2.53124 2.78074 3.08318 3.19879 3.29366 3.32593 3.63564 3.80687 3.92901 4.47341 4.49036 4.69937 4.75047 4.81752 4.85947 4.93883 5.07581 5.10311 5.28508 5.36740 5.43614 5.47579 5.49230 5.56271 5.56841 5.67644 5.72077 5.80916 5.86041 5.97652 6.05268 6.08158 6.17598 6.20362 6.28423 6.35905 6.48335 6.80477 6.94339 7.13397 7.13664 7.36121 7.51071 7.68264 7.75396 7.90473 8.00266 8.21100 8.35012 8.65593 8.74106 8.94028 9.93468 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016364 B = 0.003147 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.681888 B = 8895.082151 C =10061.333805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.111 4.111 4 C 0.091 3.909 5 H 0.057 0.943 6 C -0.127 4.127 7 C -0.107 4.107 8 H 0.095 0.905 9 C 0.502 3.498 10 O -0.539 6.539 11 N -0.633 5.633 12 C 0.005 3.995 13 C -0.082 4.082 14 C -0.242 4.242 15 C -0.093 4.093 16 C -0.209 4.209 17 C 0.090 3.910 18 C -0.531 4.531 19 H 0.073 0.927 20 C 0.044 3.956 21 N -0.788 5.788 22 Si 1.061 2.939 23 H -0.274 1.274 24 H -0.274 1.274 25 H -0.276 1.276 26 C -0.149 4.149 27 C 0.066 3.934 28 O -0.378 6.378 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.402 0.598 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.300 0.700 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.645 -12.368 -1.165 17.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.149 4.149 4 C 0.033 3.967 5 H 0.075 0.925 6 C -0.165 4.165 7 C -0.129 4.129 8 H 0.113 0.887 9 C 0.289 3.711 10 O -0.417 6.417 11 N -0.275 5.275 12 C -0.088 4.088 13 C -0.102 4.102 14 C -0.262 4.262 15 C -0.112 4.112 16 C -0.229 4.229 17 C 0.086 3.914 18 C -0.558 4.558 19 H 0.091 0.909 20 C -0.179 4.179 21 N -0.410 5.410 22 Si 0.885 3.115 23 H -0.198 1.198 24 H -0.200 1.200 25 H -0.202 1.202 26 C -0.187 4.187 27 C -0.011 4.011 28 O -0.297 6.297 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.238 0.762 39 H 0.139 0.861 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.124 0.876 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.114 0.886 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.756 -12.021 -0.719 16.147 hybrid contribution -0.877 0.177 -0.341 0.958 sum -11.633 -11.844 -1.061 16.636 Atomic orbital electron populations 1.21783 0.96054 1.01431 1.01748 1.21483 0.95486 0.96627 1.02354 1.21634 0.92624 0.97607 1.03019 1.22178 0.94666 0.92898 0.86969 0.92470 1.22009 0.93258 0.96901 1.04304 1.21356 0.97458 0.94412 0.99651 0.88727 1.20429 0.82611 0.90670 0.77426 1.90596 1.55846 1.45367 1.49935 1.42881 1.06570 1.09341 1.68671 1.17656 0.97929 0.82620 1.10627 1.20953 0.99040 0.91625 0.98564 1.20288 0.97434 0.95437 1.13009 1.20400 0.94486 0.97188 0.99106 1.20693 1.01175 0.91938 1.09071 1.17437 0.90993 0.93259 0.89698 1.20272 0.93508 0.99115 1.42949 0.90866 1.26956 0.96510 0.96776 0.97692 1.70461 1.41686 1.17672 1.11203 0.83692 0.76199 0.75690 0.75957 1.19827 1.19988 1.20151 1.22221 1.01677 0.97462 0.97366 1.22533 0.81106 0.95275 1.02219 1.87910 1.20778 1.82299 1.38726 0.92916 0.92874 0.92741 0.91249 0.92332 0.90529 0.90979 0.90265 0.90168 0.76236 0.86134 0.89076 0.89270 0.87552 0.88692 0.90379 0.90165 0.88591 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -1.04 5.83 -26.73 -0.16 -1.20 16 3 C -0.11 -1.06 4.92 -26.73 -0.13 -1.19 16 4 C 0.09 0.98 2.64 -26.69 -0.07 0.91 16 5 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 6 C -0.13 -1.64 4.01 -26.59 -0.11 -1.75 16 7 C -0.11 -1.47 2.63 -91.58 -0.24 -1.71 16 8 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 9 C 0.50 9.40 7.04 -10.99 -0.08 9.32 16 10 O -0.54 -11.85 13.01 5.56 0.07 -11.77 16 11 N -0.63 -12.79 4.95 -9.48 -0.05 -12.84 16 12 C 0.01 0.13 6.44 -83.17 -0.54 -0.41 16 13 C -0.08 -1.98 8.76 -39.44 -0.35 -2.33 16 14 C -0.24 -5.67 10.04 -39.35 -0.39 -6.07 16 15 C -0.09 -2.19 9.97 -39.99 -0.40 -2.59 16 16 C -0.21 -5.29 8.01 -39.28 -0.31 -5.60 16 17 C 0.09 2.30 5.30 -106.65 -0.57 1.74 16 18 C -0.53 -13.07 8.31 -37.86 -0.31 -13.38 16 19 H 0.07 1.71 7.25 -52.49 -0.38 1.33 16 20 C 0.04 1.05 4.85 -17.32 -0.08 0.97 16 21 N -0.79 -19.92 12.32 55.55 0.68 -19.24 16 22 Si 1.06 20.43 30.02 -169.99 -5.10 15.33 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 25 H -0.28 -4.96 7.11 56.52 0.40 -4.56 16 26 C -0.15 -1.76 5.29 -26.60 -0.14 -1.90 16 27 C 0.07 0.66 6.84 37.20 0.25 0.92 16 28 O -0.38 -4.43 9.94 -35.23 -0.35 -4.78 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.65 7.82 -51.93 -0.41 0.24 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 1.16 8.03 -51.93 -0.42 0.75 16 38 H 0.40 7.34 7.01 -40.82 -0.29 7.05 16 39 H 0.12 2.92 5.71 -52.49 -0.30 2.62 16 40 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 41 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 42 H 0.11 2.75 6.57 -52.49 -0.34 2.40 16 43 H 0.30 7.83 6.97 -40.82 -0.28 7.54 16 44 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.08 0.88 7.55 -51.93 -0.39 0.49 16 46 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 373.10 15.07 5.62 5.62 Total: -1.00 -28.68 373.10 -9.90 -38.58 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -7.53 Total: 14.15 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -3.25 Total: -25.05 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.64 Total: -32.08 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.28 Total: -16.55 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.10 Total: 15.33 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.68 -9.90 -38.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344362544.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.459 kcal (2) G-P(sol) polarization free energy of solvation -28.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds