Wall clock time and date at job start Tue Mar 31 2020 12:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47203 * 2 1 4 4 C 1.53003 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.47897 * 304.97937 * 4 3 2 6 6 C 1.53085 * 109.48932 * 184.95213 * 4 3 2 7 7 C 1.53186 * 109.16115 * 182.40278 * 6 4 3 8 8 H 1.08999 * 109.61647 * 297.06742 * 7 6 4 9 9 C 1.50703 * 109.54301 * 176.84891 * 7 6 4 10 10 O 1.21281 * 119.99734 * 0.44113 * 9 7 6 11 11 N 1.34773 * 119.99906 * 180.44666 * 9 7 6 12 12 C 1.39128 * 119.99821 * 185.57968 * 11 9 7 13 13 C 1.38639 * 120.28394 * 331.21907 * 12 11 9 14 14 C 1.38227 * 120.03328 * 180.02562 * 13 12 11 15 15 C 1.38863 * 120.61316 * 359.97320 * 14 13 12 16 16 C 1.36467 * 120.57989 * 359.76096 * 15 14 13 17 17 C 1.40733 * 119.93818 * 0.52104 * 16 15 14 18 18 C 1.41076 * 120.29764 * 179.73770 * 17 16 15 19 19 H 1.08002 * 120.00071 * 155.31430 * 18 17 16 20 20 C 1.39962 * 119.99903 * 335.30921 * 18 17 16 21 21 N 1.30856 * 119.99909 * 331.23117 * 20 18 17 22 22 Si 1.86796 * 119.99838 * 151.23605 * 20 18 17 23 23 H 1.48504 * 109.47038 * 179.97438 * 22 20 18 24 24 H 1.48499 * 109.47301 * 299.99734 * 22 20 18 25 25 H 1.48502 * 109.47257 * 60.00046 * 22 20 18 26 26 C 1.53175 * 109.03550 * 56.97667 * 7 6 4 27 27 C 1.53088 * 109.16766 * 303.02398 * 26 7 6 28 28 O 1.42898 * 109.41655 * 57.60228 * 27 26 7 29 29 H 1.09000 * 109.47056 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46718 * 299.99723 * 1 2 3 31 31 H 1.08994 * 109.47260 * 59.99718 * 1 2 3 32 32 H 1.09002 * 109.46718 * 240.00277 * 2 1 3 33 33 H 1.08999 * 109.47575 * 120.00638 * 2 1 3 34 34 H 1.09002 * 109.47057 * 60.00485 * 3 2 1 35 35 H 1.08999 * 109.47376 * 300.00760 * 3 2 1 36 36 H 1.09000 * 109.52906 * 62.49778 * 6 4 3 37 37 H 1.09004 * 109.52541 * 302.30616 * 6 4 3 38 38 H 0.97002 * 120.00180 * 5.57775 * 11 9 7 39 39 H 1.07996 * 119.98708 * 0.03878 * 13 12 11 40 40 H 1.07998 * 119.69279 * 180.02562 * 14 13 12 41 41 H 1.08008 * 119.71007 * 180.02562 * 15 14 13 42 42 H 1.07995 * 120.02866 * 180.25264 * 16 15 14 43 43 H 0.96994 * 119.99696 * 353.79005 * 21 20 18 44 44 H 1.09005 * 109.52043 * 62.92775 * 26 7 6 45 45 H 1.09000 * 109.51855 * 183.10941 * 26 7 6 46 46 H 1.08997 * 109.48285 * 177.59136 * 27 26 7 47 47 H 1.09006 * 109.47598 * 297.62532 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9339 0.8532 0.8411 6 6 4.0809 2.8802 0.1239 7 6 5.6115 2.8772 0.0621 8 1 6.0108 2.3199 0.9095 9 6 6.1206 4.2949 0.1062 10 8 5.3381 5.2179 0.1879 11 7 7.4454 4.5370 0.0548 12 6 7.9220 5.8346 0.2120 13 6 7.1408 6.9167 -0.1634 14 6 7.6197 8.2037 -0.0054 15 6 8.8817 8.4280 0.5289 16 6 9.6695 7.3816 0.9118 17 6 9.2081 6.0612 0.7560 18 6 10.0184 4.9736 1.1442 19 1 9.5653 4.0287 1.4053 20 6 11.4097 5.1191 1.1908 21 7 12.0054 5.9709 0.3958 22 14 12.4160 4.0974 2.3877 23 1 13.8543 4.4364 2.2403 24 1 11.9782 4.3882 3.7766 25 1 12.2157 2.6549 2.0973 26 6 6.0574 2.2129 -1.2440 27 6 5.4702 0.8009 -1.3158 28 8 4.0461 0.8733 -1.2219 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.7556 3.3013 1.0752 37 1 3.6844 3.4800 -0.6954 38 1 8.0666 3.8066 -0.0919 39 1 6.1575 6.7541 -0.5794 40 1 7.0063 9.0426 -0.2993 41 1 9.2411 9.4397 0.6463 42 1 10.6479 7.5664 1.3300 43 1 11.4961 6.4351 -0.2867 44 1 5.7009 2.7991 -2.0911 45 1 7.1456 2.1567 -1.2710 46 1 5.7490 0.3389 -2.2629 47 1 5.8589 0.2033 -0.4912 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344362544.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:01 Heat of formation + Delta-G solvation = -110.313653 kcal Electronic energy + Delta-G solvation = -26637.222185 eV Core-core repulsion = 22975.518906 eV Total energy + Delta-G solvation = -3661.703279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.70952 -40.27268 -39.04535 -35.98819 -35.81420 -35.55089 -34.69762 -32.18620 -31.28993 -30.41774 -28.29538 -27.07515 -26.00959 -23.88607 -23.48647 -22.80611 -21.96320 -21.61033 -20.65142 -19.85534 -18.44868 -17.86638 -17.42556 -16.91966 -16.70477 -16.32233 -15.77944 -15.75481 -15.41893 -15.31188 -15.22527 -15.00083 -14.51202 -14.27390 -14.12744 -13.87214 -13.76195 -13.64204 -13.32861 -13.05298 -12.71734 -12.58298 -12.46113 -12.36037 -12.32298 -12.12429 -11.96478 -11.88008 -11.63702 -11.52723 -11.48174 -11.27077 -11.11953 -10.82881 -10.67032 -10.28229 -9.58362 -9.31897 -8.81809 -6.40657 0.74048 0.90631 1.53238 1.64672 1.72568 1.81325 2.30678 2.33107 2.66832 2.84810 3.51516 3.52259 3.59205 3.73040 3.88118 4.07717 4.12896 4.26305 4.29309 4.34010 4.38475 4.43912 4.48886 4.58877 4.64988 4.68243 4.75284 4.80918 4.82149 4.93728 4.98463 5.02489 5.06035 5.06593 5.09196 5.22543 5.28916 5.31351 5.40478 5.47493 5.51542 5.65797 5.74953 5.91913 6.01742 6.11384 6.30522 6.34048 6.61227 6.85474 6.89664 7.31662 8.01245 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016364 B = 0.003147 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.681888 B = 8895.082151 C =10061.333805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.111 4.111 4 C 0.096 3.904 5 H 0.074 0.926 6 C -0.123 4.123 7 C -0.098 4.098 8 H 0.117 0.883 9 C 0.499 3.501 10 O -0.574 6.574 11 N -0.633 5.633 12 C 0.001 3.999 13 C -0.099 4.099 14 C -0.245 4.245 15 C -0.098 4.098 16 C -0.229 4.229 17 C 0.064 3.936 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.011 3.989 21 N -0.807 5.807 22 Si 1.112 2.888 23 H -0.276 1.276 24 H -0.270 1.270 25 H -0.249 1.249 26 C -0.145 4.145 27 C 0.066 3.934 28 O -0.390 6.390 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.411 0.589 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.094 0.906 43 H 0.284 0.716 44 H 0.061 0.939 45 H 0.090 0.910 46 H 0.114 0.886 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.897 -14.721 -0.423 18.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.149 4.149 4 C 0.038 3.962 5 H 0.092 0.908 6 C -0.161 4.161 7 C -0.119 4.119 8 H 0.135 0.865 9 C 0.289 3.711 10 O -0.454 6.454 11 N -0.275 5.275 12 C -0.094 4.094 13 C -0.120 4.120 14 C -0.265 4.265 15 C -0.116 4.116 16 C -0.249 4.249 17 C 0.060 3.940 18 C -0.573 4.573 19 H 0.101 0.899 20 C -0.207 4.207 21 N -0.429 5.429 22 Si 0.929 3.071 23 H -0.201 1.201 24 H -0.195 1.195 25 H -0.173 1.173 26 C -0.183 4.183 27 C -0.010 4.010 28 O -0.309 6.309 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.248 0.752 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.112 0.888 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.109 0.891 46 H 0.132 0.868 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.030 -14.397 0.000 18.136 hybrid contribution -0.883 0.984 -0.616 1.459 sum -11.913 -13.413 -0.616 17.950 Atomic orbital electron populations 1.21778 0.95318 1.02034 1.01834 1.21439 0.96127 0.95651 1.02295 1.21652 0.91873 0.98446 1.02909 1.22191 0.95353 0.91269 0.87347 0.90841 1.21987 0.92659 0.98353 1.03108 1.21392 0.97826 0.91007 1.01696 0.86482 1.21367 0.81608 0.92546 0.75611 1.90571 1.56486 1.47171 1.51166 1.42914 1.07465 1.08231 1.68909 1.17842 0.97568 0.84366 1.09597 1.21114 0.99136 0.92345 0.99366 1.20601 0.97616 0.95973 1.12275 1.20648 0.94350 0.98076 0.98558 1.20733 1.01100 0.92752 1.10269 1.17762 0.91931 0.93821 0.90484 1.20486 0.94074 0.99352 1.43388 0.89920 1.28335 0.97565 0.96766 0.98079 1.70574 1.41501 1.18908 1.11897 0.83059 0.74468 0.75651 0.73876 1.20091 1.19515 1.17324 1.22228 1.02398 0.98342 0.95374 1.22672 0.80224 0.94030 1.04084 1.87914 1.21762 1.82113 1.39149 0.92068 0.92429 0.93057 0.92080 0.91540 0.89773 0.92044 0.90825 0.92370 0.75180 0.86445 0.86811 0.86792 0.88808 0.90388 0.92048 0.89148 0.86823 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.12 -1.79 5.83 30.60 0.18 -1.61 16 3 C -0.11 -1.97 4.92 30.60 0.15 -1.82 16 4 C 0.10 1.90 2.64 30.62 0.08 1.98 16 5 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 6 C -0.12 -3.09 4.01 30.68 0.12 -2.97 16 7 C -0.10 -2.56 2.63 -11.42 -0.03 -2.59 16 8 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 9 C 0.50 18.64 7.04 87.66 0.62 19.26 16 10 O -0.57 -25.61 13.01 -3.03 -0.04 -25.65 16 11 N -0.63 -25.52 4.95 -302.29 -1.50 -27.02 16 12 C 0.00 0.05 6.44 38.87 0.25 0.30 16 13 C -0.10 -4.89 8.76 22.36 0.20 -4.69 16 14 C -0.25 -11.49 10.04 22.42 0.22 -11.26 16 15 C -0.10 -4.62 9.97 22.01 0.22 -4.40 16 16 C -0.23 -11.80 8.01 22.47 0.18 -11.62 16 17 C 0.06 3.32 5.30 -21.18 -0.11 3.21 16 18 C -0.55 -26.83 8.31 23.38 0.19 -26.64 16 19 H 0.08 3.79 7.25 -2.91 -0.02 3.77 16 20 C 0.01 0.51 4.85 85.26 0.41 0.92 16 21 N -0.81 -41.31 12.32 21.83 0.27 -41.04 16 22 Si 1.11 39.96 30.02 68.60 2.06 42.02 16 23 H -0.28 -9.98 7.11 99.48 0.71 -9.27 16 24 H -0.27 -9.47 7.11 99.48 0.71 -8.77 16 25 H -0.25 -7.88 7.11 99.48 0.71 -7.17 16 26 C -0.15 -3.18 5.29 30.68 0.16 -3.02 16 27 C 0.07 1.15 6.84 72.01 0.49 1.64 16 28 O -0.39 -8.30 9.94 -148.98 -1.48 -9.78 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 1.04 7.82 -2.39 -0.02 1.02 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.06 1.71 8.03 -2.39 -0.02 1.69 16 38 H 0.41 14.74 7.01 -92.71 -0.65 14.09 16 39 H 0.12 5.81 5.71 -2.91 -0.02 5.80 16 40 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 41 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 42 H 0.09 4.99 6.57 -2.91 -0.02 4.97 16 43 H 0.28 15.29 6.97 -92.71 -0.65 14.65 16 44 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 45 H 0.09 1.80 7.55 -2.39 -0.02 1.78 16 46 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -62.69 373.10 3.80 -58.90 By element: Atomic # 1 Polarization: 46.74 SS G_CDS: 0.43 Total: 47.18 kcal Atomic # 6 Polarization: -48.66 SS G_CDS: 4.05 Total: -44.61 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: -1.23 Total: -68.06 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -1.52 Total: -35.43 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.06 Total: 42.02 kcal Total: -62.69 3.80 -58.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344362544.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.419 kcal (2) G-P(sol) polarization free energy of solvation -62.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds