Wall clock time and date at job start Tue Mar 31 2020 12:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46796 * 2 1 4 4 C 1.53004 * 109.47242 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47840 * 305.02337 * 4 3 2 6 6 C 1.53090 * 109.48136 * 184.99575 * 4 3 2 7 7 C 1.53181 * 109.16314 * 182.40594 * 6 4 3 8 8 H 1.08998 * 109.54339 * 176.93411 * 7 6 4 9 9 C 1.50695 * 109.54631 * 297.12074 * 7 6 4 10 10 O 1.21283 * 119.99907 * 359.97438 * 9 7 6 11 11 N 1.34771 * 120.00193 * 179.97438 * 9 7 6 12 12 C 1.39129 * 120.00407 * 174.46724 * 11 9 7 13 13 C 1.38649 * 120.28143 * 340.13639 * 12 11 9 14 14 C 1.38221 * 120.03291 * 179.97438 * 13 12 11 15 15 C 1.38859 * 120.61503 * 0.02720 * 14 13 12 16 16 C 1.36466 * 120.58191 * 0.02562 * 15 14 13 17 17 C 1.40745 * 119.94014 * 359.65561 * 16 15 14 18 18 C 1.41066 * 120.30342 * 180.34272 * 17 16 15 19 19 H 1.07991 * 120.00252 * 151.31270 * 18 17 16 20 20 C 1.39960 * 119.99555 * 331.31271 * 18 17 16 21 21 N 1.30851 * 120.00472 * 348.51055 * 20 18 17 22 22 Si 1.86802 * 119.99671 * 168.51473 * 20 18 17 23 23 H 1.48494 * 109.47121 * 89.99819 * 22 20 18 24 24 H 1.48496 * 109.47206 * 209.99995 * 22 20 18 25 25 H 1.48502 * 109.47063 * 329.99929 * 22 20 18 26 26 C 1.53177 * 109.02945 * 56.98598 * 7 6 4 27 27 C 1.53090 * 109.16620 * 303.01517 * 26 7 6 28 28 O 1.42900 * 109.41516 * 57.61313 * 27 26 7 29 29 H 1.08991 * 109.47331 * 300.00130 * 1 2 3 30 30 H 1.09004 * 109.47277 * 60.00621 * 1 2 3 31 31 H 1.09010 * 109.46799 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47382 * 239.99830 * 2 1 3 33 33 H 1.08996 * 109.46728 * 119.99623 * 2 1 3 34 34 H 1.09001 * 109.47294 * 59.99776 * 3 2 1 35 35 H 1.09003 * 109.47406 * 299.99975 * 3 2 1 36 36 H 1.09001 * 109.52728 * 302.31520 * 6 4 3 37 37 H 1.09003 * 109.52056 * 62.50554 * 6 4 3 38 38 H 0.97006 * 119.99808 * 354.46832 * 11 9 7 39 39 H 1.08001 * 119.98201 * 0.02562 * 13 12 11 40 40 H 1.07997 * 119.68812 * 180.02562 * 14 13 12 41 41 H 1.08007 * 119.70966 * 179.97438 * 15 14 13 42 42 H 1.07999 * 120.03100 * 179.97438 * 16 15 14 43 43 H 0.96997 * 119.99826 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.52524 * 62.92680 * 26 7 6 45 45 H 1.09004 * 109.52360 * 183.11297 * 26 7 6 46 46 H 1.09003 * 109.47964 * 177.59606 * 27 26 7 47 47 H 1.09003 * 109.47927 * 297.61914 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9331 0.8530 0.8424 6 6 4.0803 2.8805 0.1263 7 6 5.6110 2.8778 0.0658 8 1 5.9790 3.9032 0.1000 9 6 6.1605 2.1054 1.2372 10 8 5.4040 1.6058 2.0428 11 7 7.4927 1.9698 1.3897 12 6 8.0037 1.3573 2.5296 13 6 7.2293 1.2550 3.6751 14 6 7.7420 0.6449 4.8045 15 6 9.0317 0.1303 4.8066 16 6 9.8161 0.2183 3.6934 17 6 9.3158 0.8286 2.5280 18 6 10.1175 0.9172 1.3706 19 1 9.6562 0.9368 0.3944 20 6 11.5108 0.9798 1.4877 21 7 12.0607 1.1824 2.6576 22 14 12.5854 0.7742 -0.0264 23 1 12.8264 2.1019 -0.6463 24 1 13.8830 0.1683 0.3661 25 1 11.9009 -0.1110 -1.0027 26 6 6.0579 2.2144 -1.2405 27 6 5.4712 0.8023 -1.3135 28 8 4.0470 0.8743 -1.2207 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.6844 3.4805 -0.6930 37 1 3.7542 3.3009 1.0777 38 1 8.0953 2.2994 0.7047 39 1 6.2247 1.6514 3.6846 40 1 7.1337 0.5679 5.6936 41 1 9.4177 -0.3431 5.6973 42 1 10.8180 -0.1847 3.7050 43 1 13.0263 1.2254 2.7387 44 1 5.7020 2.8010 -2.0874 45 1 7.1462 2.1584 -1.2669 46 1 5.7509 0.3409 -2.2607 47 1 5.8596 0.2042 -0.4891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344362546.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:07 Heat of formation + Delta-G solvation = -83.436986 kcal Electronic energy + Delta-G solvation = -27370.721053 eV Core-core repulsion = 23710.183234 eV Total energy + Delta-G solvation = -3660.537819 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.56614 -38.62962 -37.04515 -35.02805 -33.89884 -33.73818 -33.41224 -31.13814 -29.63758 -28.48734 -27.25346 -25.43056 -24.57947 -22.88402 -22.11203 -21.24556 -20.93100 -20.20180 -18.83148 -17.39683 -16.60964 -16.35890 -16.19825 -15.97488 -15.17585 -14.93923 -14.59057 -14.41560 -14.27867 -13.91049 -13.69192 -13.09587 -12.93121 -12.78377 -12.71529 -12.62776 -12.24877 -12.15074 -11.76849 -11.70344 -11.51454 -11.37603 -11.31302 -11.18750 -11.01890 -10.89252 -10.60677 -10.57506 -10.54301 -10.27798 -9.98486 -9.74047 -9.42527 -9.30545 -9.27443 -8.53862 -7.40057 -6.98096 -6.68659 -4.43601 2.54797 2.82339 3.00723 3.03741 3.16916 3.43997 3.82879 3.85130 3.93913 4.58356 4.61824 4.83008 4.84988 4.94780 5.07366 5.13822 5.22641 5.39278 5.44457 5.54435 5.62969 5.64306 5.68097 5.73867 5.79744 5.83532 5.94705 5.97592 5.99731 6.06995 6.14823 6.22849 6.32265 6.36083 6.42050 6.53485 6.60255 6.86584 7.02836 7.12465 7.26652 7.41602 7.61838 7.68939 7.94237 8.07365 8.08835 8.40843 8.52954 8.78301 8.79652 8.98904 10.13941 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.003789 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.975661 B = 7388.297425 C = 8474.718063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.107 4.107 4 C 0.078 3.922 5 H 0.089 0.911 6 C -0.124 4.124 7 C -0.112 4.112 8 H 0.098 0.902 9 C 0.498 3.502 10 O -0.535 6.535 11 N -0.632 5.632 12 C 0.020 3.980 13 C -0.106 4.106 14 C -0.220 4.220 15 C -0.119 4.119 16 C -0.145 4.145 17 C 0.098 3.902 18 C -0.471 4.471 19 H 0.073 0.927 20 C 0.077 3.923 21 N -0.798 5.798 22 Si 0.907 3.093 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.262 1.262 26 C -0.147 4.147 27 C 0.060 3.940 28 O -0.381 6.381 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.404 0.596 39 H 0.126 0.874 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.122 0.878 43 H 0.280 0.720 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.360 2.624 -7.771 14.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.144 4.144 4 C 0.021 3.979 5 H 0.106 0.894 6 C -0.162 4.162 7 C -0.133 4.133 8 H 0.116 0.884 9 C 0.285 3.715 10 O -0.415 6.415 11 N -0.273 5.273 12 C -0.074 4.074 13 C -0.126 4.126 14 C -0.240 4.240 15 C -0.138 4.138 16 C -0.165 4.165 17 C 0.094 3.906 18 C -0.501 4.501 19 H 0.092 0.908 20 C -0.141 4.141 21 N -0.423 5.423 22 Si 0.732 3.268 23 H -0.195 1.195 24 H -0.201 1.201 25 H -0.186 1.186 26 C -0.185 4.185 27 C -0.017 4.017 28 O -0.301 6.301 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.240 0.760 39 H 0.143 0.857 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.139 0.861 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.112 0.888 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.785 2.277 -7.262 14.029 hybrid contribution 1.358 0.334 -0.714 1.570 sum -10.427 2.611 -7.976 13.385 Atomic orbital electron populations 1.21779 0.96277 1.01337 1.01440 1.21475 0.95148 0.96845 1.02592 1.21587 0.93221 0.97497 1.02117 1.22436 0.94057 0.93434 0.88003 0.89360 1.21949 0.93072 0.98412 1.02806 1.21409 0.97408 1.00556 0.93942 0.88412 1.20462 0.82543 0.81535 0.86979 1.90526 1.57721 1.48610 1.44619 1.43000 1.06237 1.56560 1.21492 1.17863 0.96720 1.06279 0.86532 1.21020 0.99705 1.00333 0.91541 1.20364 0.96545 1.09378 0.97721 1.20493 0.94475 1.01190 0.97617 1.20920 1.00090 1.02399 0.93082 1.17358 0.89624 0.89547 0.94077 1.19249 0.90849 1.46446 0.93562 0.90849 1.25835 0.98783 0.92280 0.97156 1.69797 1.12793 1.35092 1.24655 0.86324 0.79323 0.79372 0.81791 1.19528 1.20094 1.18556 1.22193 1.01708 0.97936 0.96680 1.22527 0.81417 0.95441 1.02320 1.87846 1.20467 1.82636 1.39124 0.92952 0.92988 0.92984 0.91387 0.92039 0.90834 0.91735 0.91017 0.90312 0.76031 0.85681 0.89260 0.89450 0.86052 0.90864 0.90157 0.90212 0.88845 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.06 16 2 C -0.12 -1.42 5.83 -26.73 -0.16 -1.58 16 3 C -0.11 -1.26 4.92 -26.73 -0.13 -1.39 16 4 C 0.08 1.10 2.35 -26.68 -0.06 1.03 16 5 H 0.09 1.52 5.80 -51.93 -0.30 1.22 16 6 C -0.12 -1.60 4.56 -26.59 -0.12 -1.72 16 7 C -0.11 -1.51 3.05 -91.59 -0.28 -1.79 16 8 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 9 C 0.50 8.96 5.66 -10.99 -0.06 8.90 16 10 O -0.54 -11.05 10.74 5.56 0.06 -10.99 16 11 N -0.63 -12.49 5.09 -9.48 -0.05 -12.53 16 12 C 0.02 0.48 6.53 -83.17 -0.54 -0.07 16 13 C -0.11 -2.53 8.77 -39.44 -0.35 -2.88 16 14 C -0.22 -5.14 10.04 -39.36 -0.40 -5.53 16 15 C -0.12 -2.82 9.96 -39.99 -0.40 -3.22 16 16 C -0.14 -3.70 8.60 -39.27 -0.34 -4.04 16 17 C 0.10 2.48 5.56 -106.65 -0.59 1.89 16 18 C -0.47 -11.50 8.33 -37.87 -0.32 -11.81 16 19 H 0.07 1.67 7.14 -52.49 -0.38 1.29 16 20 C 0.08 1.82 5.24 -17.32 -0.09 1.72 16 21 N -0.80 -19.75 10.87 55.55 0.60 -19.15 16 22 Si 0.91 17.63 29.58 -169.99 -5.03 12.61 16 23 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 24 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 25 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 26 C -0.15 -1.79 5.56 -26.59 -0.15 -1.93 16 27 C 0.06 0.82 6.62 37.20 0.25 1.07 16 28 O -0.38 -5.54 9.94 -35.23 -0.35 -5.89 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.07 0.84 7.83 -51.93 -0.41 0.43 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.04 8.03 -51.93 -0.42 0.62 16 38 H 0.40 7.27 6.68 -40.82 -0.27 7.00 16 39 H 0.13 2.95 5.43 -52.49 -0.29 2.67 16 40 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 42 H 0.12 3.18 6.23 -52.49 -0.33 2.85 16 43 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.08 0.93 7.41 -51.93 -0.38 0.54 16 46 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.05 0.86 7.38 -51.93 -0.38 0.48 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -27.90 366.82 -9.96 -37.86 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -7.36 Total: 14.98 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -3.37 Total: -22.41 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 0.56 Total: -31.68 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.29 Total: -16.88 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.90 -9.96 -37.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344362546.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.573 kcal (2) G-P(sol) polarization free energy of solvation -27.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds