Wall clock time and date at job start Tue Mar 31 2020 12:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46796 * 2 1 4 4 C 1.53004 * 109.47242 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47840 * 305.02337 * 4 3 2 6 6 C 1.53090 * 109.48136 * 184.99575 * 4 3 2 7 7 C 1.53181 * 109.16314 * 182.40594 * 6 4 3 8 8 H 1.08998 * 109.54339 * 176.93411 * 7 6 4 9 9 C 1.50695 * 109.54631 * 297.12074 * 7 6 4 10 10 O 1.21283 * 119.99907 * 359.97438 * 9 7 6 11 11 N 1.34771 * 120.00193 * 179.97438 * 9 7 6 12 12 C 1.39129 * 120.00407 * 174.46724 * 11 9 7 13 13 C 1.38649 * 120.28143 * 340.13639 * 12 11 9 14 14 C 1.38221 * 120.03291 * 179.97438 * 13 12 11 15 15 C 1.38859 * 120.61503 * 0.02720 * 14 13 12 16 16 C 1.36466 * 120.58191 * 0.02562 * 15 14 13 17 17 C 1.40745 * 119.94014 * 359.65561 * 16 15 14 18 18 C 1.41066 * 120.30342 * 180.34272 * 17 16 15 19 19 H 1.07991 * 120.00252 * 151.31270 * 18 17 16 20 20 C 1.39960 * 119.99555 * 331.31271 * 18 17 16 21 21 N 1.30851 * 120.00472 * 348.51055 * 20 18 17 22 22 Si 1.86802 * 119.99671 * 168.51473 * 20 18 17 23 23 H 1.48494 * 109.47121 * 89.99819 * 22 20 18 24 24 H 1.48496 * 109.47206 * 209.99995 * 22 20 18 25 25 H 1.48502 * 109.47063 * 329.99929 * 22 20 18 26 26 C 1.53177 * 109.02945 * 56.98598 * 7 6 4 27 27 C 1.53090 * 109.16620 * 303.01517 * 26 7 6 28 28 O 1.42900 * 109.41516 * 57.61313 * 27 26 7 29 29 H 1.08991 * 109.47331 * 300.00130 * 1 2 3 30 30 H 1.09004 * 109.47277 * 60.00621 * 1 2 3 31 31 H 1.09010 * 109.46799 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47382 * 239.99830 * 2 1 3 33 33 H 1.08996 * 109.46728 * 119.99623 * 2 1 3 34 34 H 1.09001 * 109.47294 * 59.99776 * 3 2 1 35 35 H 1.09003 * 109.47406 * 299.99975 * 3 2 1 36 36 H 1.09001 * 109.52728 * 302.31520 * 6 4 3 37 37 H 1.09003 * 109.52056 * 62.50554 * 6 4 3 38 38 H 0.97006 * 119.99808 * 354.46832 * 11 9 7 39 39 H 1.08001 * 119.98201 * 0.02562 * 13 12 11 40 40 H 1.07997 * 119.68812 * 180.02562 * 14 13 12 41 41 H 1.08007 * 119.70966 * 179.97438 * 15 14 13 42 42 H 1.07999 * 120.03100 * 179.97438 * 16 15 14 43 43 H 0.96997 * 119.99826 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.52524 * 62.92680 * 26 7 6 45 45 H 1.09004 * 109.52360 * 183.11297 * 26 7 6 46 46 H 1.09003 * 109.47964 * 177.59606 * 27 26 7 47 47 H 1.09003 * 109.47927 * 297.61914 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9331 0.8530 0.8424 6 6 4.0803 2.8805 0.1263 7 6 5.6110 2.8778 0.0658 8 1 5.9790 3.9032 0.1000 9 6 6.1605 2.1054 1.2372 10 8 5.4040 1.6058 2.0428 11 7 7.4927 1.9698 1.3897 12 6 8.0037 1.3573 2.5296 13 6 7.2293 1.2550 3.6751 14 6 7.7420 0.6449 4.8045 15 6 9.0317 0.1303 4.8066 16 6 9.8161 0.2183 3.6934 17 6 9.3158 0.8286 2.5280 18 6 10.1175 0.9172 1.3706 19 1 9.6562 0.9368 0.3944 20 6 11.5108 0.9798 1.4877 21 7 12.0607 1.1824 2.6576 22 14 12.5854 0.7742 -0.0264 23 1 12.8264 2.1019 -0.6463 24 1 13.8830 0.1683 0.3661 25 1 11.9009 -0.1110 -1.0027 26 6 6.0579 2.2144 -1.2405 27 6 5.4712 0.8023 -1.3135 28 8 4.0470 0.8743 -1.2207 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.6844 3.4805 -0.6930 37 1 3.7542 3.3009 1.0777 38 1 8.0953 2.2994 0.7047 39 1 6.2247 1.6514 3.6846 40 1 7.1337 0.5679 5.6936 41 1 9.4177 -0.3431 5.6973 42 1 10.8180 -0.1847 3.7050 43 1 13.0263 1.2254 2.7387 44 1 5.7020 2.8010 -2.0874 45 1 7.1462 2.1584 -1.2669 46 1 5.7509 0.3409 -2.2607 47 1 5.8596 0.2042 -0.4891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344362546.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:06 Heat of formation + Delta-G solvation = -97.387023 kcal Electronic energy + Delta-G solvation = -27371.325972 eV Core-core repulsion = 23710.183234 eV Total energy + Delta-G solvation = -3661.142738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.91416 -40.06117 -38.67718 -36.02619 -35.52064 -35.45828 -34.63450 -32.14343 -31.48972 -30.23702 -28.24484 -27.19033 -25.80525 -24.03662 -23.46616 -22.93165 -21.90891 -21.81346 -20.27649 -19.20319 -18.21566 -17.63053 -17.41545 -17.21611 -16.83800 -16.19874 -16.01438 -15.66232 -15.43144 -15.35470 -14.80826 -14.72101 -14.45392 -14.30672 -13.90894 -13.76967 -13.56287 -13.30897 -13.28591 -13.11538 -12.84320 -12.77838 -12.70693 -12.43342 -12.24041 -12.15947 -11.98647 -11.83937 -11.60971 -11.54424 -11.51892 -11.20339 -11.11207 -11.05713 -10.49275 -10.02976 -9.30939 -8.78611 -8.47812 -6.30997 0.82597 1.05379 1.42103 1.51428 1.55935 1.85820 2.21737 2.40768 2.79125 2.86677 3.54111 3.71531 3.73835 3.81136 3.90723 4.06729 4.16901 4.25364 4.35134 4.43514 4.52504 4.53670 4.64435 4.69628 4.74156 4.76706 4.81041 4.84677 4.87381 4.97424 5.03265 5.05597 5.06715 5.10839 5.19577 5.24149 5.29354 5.31657 5.39383 5.46291 5.49617 5.79527 5.83231 6.13364 6.18583 6.24882 6.31982 6.65437 6.75067 6.96106 7.02016 7.39955 8.37827 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.003789 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.975661 B = 7388.297425 C = 8474.718063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C -0.103 4.103 4 C 0.076 3.924 5 H 0.049 0.951 6 C -0.121 4.121 7 C -0.105 4.105 8 H 0.126 0.874 9 C 0.496 3.504 10 O -0.563 6.563 11 N -0.634 5.634 12 C 0.018 3.982 13 C -0.122 4.122 14 C -0.226 4.226 15 C -0.125 4.125 16 C -0.170 4.170 17 C 0.069 3.931 18 C -0.490 4.490 19 H 0.084 0.916 20 C 0.036 3.964 21 N -0.830 5.830 22 Si 0.981 3.019 23 H -0.259 1.259 24 H -0.275 1.275 25 H -0.258 1.258 26 C -0.141 4.141 27 C 0.056 3.944 28 O -0.386 6.386 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.412 0.588 39 H 0.126 0.874 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.286 0.714 44 H 0.111 0.889 45 H 0.085 0.915 46 H 0.114 0.886 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.070 3.983 -10.129 16.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C -0.140 4.140 4 C 0.019 3.981 5 H 0.067 0.933 6 C -0.159 4.159 7 C -0.127 4.127 8 H 0.143 0.857 9 C 0.285 3.715 10 O -0.444 6.444 11 N -0.276 5.276 12 C -0.077 4.077 13 C -0.143 4.143 14 C -0.246 4.246 15 C -0.144 4.144 16 C -0.190 4.190 17 C 0.065 3.935 18 C -0.520 4.520 19 H 0.102 0.898 20 C -0.179 4.179 21 N -0.457 5.457 22 Si 0.802 3.198 23 H -0.183 1.183 24 H -0.200 1.200 25 H -0.181 1.181 26 C -0.178 4.178 27 C -0.021 4.021 28 O -0.306 6.306 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.249 0.751 39 H 0.143 0.857 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.097 0.903 44 H 0.129 0.871 45 H 0.104 0.896 46 H 0.132 0.868 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -12.517 3.649 -9.628 16.208 hybrid contribution 1.509 -0.126 0.074 1.516 sum -11.008 3.523 -9.554 14.995 Atomic orbital electron populations 1.21741 0.94350 1.01999 1.02260 1.21454 0.96842 0.96620 1.01170 1.21589 0.91548 0.97697 1.03155 1.22394 0.95506 0.93658 0.86572 0.93339 1.21967 0.92443 0.97731 1.03744 1.21502 0.97782 1.01114 0.92254 0.85664 1.21377 0.81521 0.80782 0.87774 1.90514 1.58170 1.49568 1.46111 1.43033 1.07209 1.56641 1.20702 1.18020 0.96306 1.05567 0.87794 1.21205 0.99876 1.01075 0.92102 1.20660 0.96657 1.08828 0.98447 1.20712 0.94562 1.01191 0.97957 1.20958 1.00000 1.03772 0.94310 1.17709 0.90720 0.90323 0.94721 1.19520 0.91669 1.47121 0.93672 0.89794 1.26708 0.99721 0.91283 1.00139 1.69875 1.13446 1.35526 1.26821 0.85202 0.77093 0.79664 0.77792 1.18325 1.19978 1.18140 1.22208 1.02057 0.96881 0.96696 1.22617 0.81159 0.96407 1.01933 1.87843 1.20857 1.82916 1.38975 0.92374 0.91864 0.92486 0.92443 0.93883 0.90124 0.90152 0.88036 0.90797 0.75114 0.85662 0.87053 0.87327 0.87451 0.90312 0.87053 0.89620 0.86779 0.96466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.91 71.98 0.71 -1.83 16 2 C -0.12 -2.80 5.83 30.59 0.18 -2.62 16 3 C -0.10 -2.28 4.92 30.59 0.15 -2.13 16 4 C 0.08 2.09 2.35 30.63 0.07 2.16 16 5 H 0.05 1.73 5.80 -2.39 -0.01 1.72 16 6 C -0.12 -2.84 4.56 30.68 0.14 -2.70 16 7 C -0.11 -2.62 3.05 -11.42 -0.03 -2.66 16 8 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 9 C 0.50 17.78 5.66 87.66 0.50 18.28 16 10 O -0.56 -23.78 10.74 -3.04 -0.03 -23.81 16 11 N -0.63 -25.16 5.09 -302.29 -1.54 -26.70 16 12 C 0.02 0.88 6.53 38.88 0.25 1.14 16 13 C -0.12 -5.98 8.77 22.36 0.20 -5.79 16 14 C -0.23 -10.70 10.04 22.41 0.22 -10.47 16 15 C -0.13 -6.07 9.96 22.00 0.22 -5.85 16 16 C -0.17 -9.00 8.60 22.47 0.19 -8.81 16 17 C 0.07 3.61 5.56 -21.18 -0.12 3.49 16 18 C -0.49 -24.21 8.33 23.38 0.19 -24.01 16 19 H 0.08 3.81 7.14 -2.92 -0.02 3.79 16 20 C 0.04 1.70 5.24 85.26 0.45 2.14 16 21 N -0.83 -41.78 10.87 21.83 0.24 -41.54 16 22 Si 0.98 35.63 29.58 68.60 2.03 37.66 16 23 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 24 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 25 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 26 C -0.14 -3.02 5.56 30.68 0.17 -2.85 16 27 C 0.06 1.46 6.62 72.01 0.48 1.94 16 28 O -0.39 -10.78 9.94 -148.98 -1.48 -12.26 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.06 0.92 8.14 -2.38 -0.02 0.91 16 32 H 0.06 1.40 7.83 -2.39 -0.02 1.38 16 33 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.10 1.83 8.14 -2.39 -0.02 1.82 16 37 H 0.07 1.82 8.03 -2.39 -0.02 1.80 16 38 H 0.41 14.65 6.68 -92.70 -0.62 14.03 16 39 H 0.13 6.07 5.43 -2.91 -0.02 6.05 16 40 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 41 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 42 H 0.11 5.87 6.23 -2.91 -0.02 5.85 16 43 H 0.29 13.13 8.30 -92.71 -0.77 12.36 16 44 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.09 1.77 7.41 -2.38 -0.02 1.75 16 46 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 47 H 0.02 0.57 7.38 -2.39 -0.02 0.55 16 Total: -1.00 -62.39 366.82 3.54 -58.86 By element: Atomic # 1 Polarization: 48.02 SS G_CDS: 0.35 Total: 48.36 kcal Atomic # 6 Polarization: -44.54 SS G_CDS: 3.97 Total: -40.57 kcal Atomic # 7 Polarization: -66.94 SS G_CDS: -1.30 Total: -68.24 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -1.51 Total: -36.07 kcal Atomic # 14 Polarization: 35.63 SS G_CDS: 2.03 Total: 37.66 kcal Total: -62.39 3.54 -58.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344362546.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.531 kcal (2) G-P(sol) polarization free energy of solvation -62.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds