Wall clock time and date at job start Tue Mar 31 2020 11:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00290 * 2 1 4 4 O 1.42896 * 109.47488 * 134.99823 * 3 2 1 5 5 C 1.35703 * 117.00248 * 179.97438 * 4 3 2 6 6 C 1.39001 * 119.91238 * 0.30191 * 5 4 3 7 7 C 1.37701 * 120.09036 * 180.25651 * 6 5 4 8 8 C 1.39740 * 119.91009 * 359.43945 * 7 6 5 9 9 C 1.47594 * 120.08984 * 180.30153 * 8 7 6 10 10 O 1.21587 * 119.99976 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00311 * 180.02562 * 9 8 7 12 12 C 1.46507 * 120.00361 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47163 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47205 * 300.00034 * 13 12 11 15 15 C 1.53010 * 109.47140 * 59.99953 * 13 12 11 16 16 C 1.52998 * 109.46978 * 179.97438 * 13 12 11 17 17 C 1.50700 * 109.47017 * 180.02562 * 16 13 12 18 18 H 1.07997 * 120.00322 * 0.02562 * 17 16 13 19 19 C 1.37878 * 120.00092 * 180.02562 * 17 16 13 20 20 N 1.31515 * 120.00223 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99790 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47012 * 90.00237 * 21 19 17 23 23 H 1.48502 * 109.46839 * 209.99890 * 21 19 17 24 24 H 1.48492 * 109.47066 * 329.99872 * 21 19 17 25 25 C 1.39733 * 119.82362 * 0.28485 * 8 7 6 26 26 C 1.37709 * 119.90833 * 359.97438 * 25 8 7 27 27 H 1.08002 * 119.99807 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.00372 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.99807 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.46861 * 14.99372 * 3 2 1 31 31 H 1.09005 * 109.46841 * 255.00330 * 3 2 1 32 32 H 1.08004 * 119.95747 * 359.97438 * 6 5 4 33 33 H 1.08002 * 120.04909 * 179.72495 * 7 6 5 34 34 H 0.97004 * 119.99698 * 359.97438 * 11 9 8 35 35 H 1.08999 * 109.46594 * 299.99752 * 12 11 9 36 36 H 1.08991 * 109.46752 * 59.99612 * 12 11 9 37 37 H 1.08996 * 109.47001 * 60.00319 * 14 13 12 38 38 H 1.08999 * 109.46953 * 179.97438 * 14 13 12 39 39 H 1.08997 * 109.46563 * 299.99950 * 14 13 12 40 40 H 1.08997 * 109.46647 * 60.00108 * 15 13 12 41 41 H 1.08999 * 109.46861 * 180.02562 * 15 13 12 42 42 H 1.08996 * 109.47045 * 299.99668 * 15 13 12 43 43 H 1.08999 * 109.47276 * 299.99675 * 16 13 12 44 44 H 1.09000 * 109.47060 * 60.00396 * 16 13 12 45 45 H 0.97000 * 120.00247 * 180.02562 * 20 19 17 46 46 H 1.08003 * 120.04691 * 180.02562 * 25 8 7 47 47 H 1.07999 * 119.95155 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9086 2.3433 1.0780 6 6 3.6518 3.4674 0.3017 7 6 4.4461 4.5857 0.4221 8 6 5.5044 4.5938 1.3346 9 6 6.3542 5.7927 1.4717 10 8 6.1336 6.7753 0.7904 11 7 7.3747 5.7984 2.3519 12 6 8.2179 6.9887 2.4884 13 6 9.2929 6.7336 3.5467 14 6 8.6249 6.4253 4.8882 15 6 10.1555 5.5436 3.1210 16 6 10.1738 7.9764 3.6887 17 6 11.2331 7.7249 4.7307 18 1 11.2742 6.7736 5.2403 19 6 12.1499 8.7093 5.0334 20 7 13.0746 8.4896 5.9424 21 14 12.0793 10.3544 4.1514 22 1 11.2030 11.2845 4.9080 23 1 13.4467 10.9264 4.0605 24 1 11.5321 10.1603 2.7847 25 6 5.7558 3.4638 2.1173 26 6 4.9600 2.3475 1.9870 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9352 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3855 2.1161 0.2659 31 1 2.4755 1.4867 -0.9927 32 1 2.8309 3.4620 -0.4002 33 1 4.2487 5.4571 -0.1846 34 1 7.5505 5.0146 2.8957 35 1 8.6934 7.2085 1.5325 36 1 7.6035 7.8362 2.7920 37 1 7.9977 5.5397 4.7867 38 1 9.3908 6.2431 5.6421 39 1 8.0105 7.2730 5.1914 40 1 10.6313 5.7633 2.1654 41 1 10.9210 5.3616 3.8753 42 1 9.5281 4.6580 3.0196 43 1 10.6498 8.1956 2.7329 44 1 9.5597 8.8244 3.9918 45 1 13.7193 9.1823 6.1556 46 1 6.5725 3.4663 2.8240 47 1 5.1534 1.4739 2.5919 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346025890.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:27 Heat of formation + Delta-G solvation = -41.399675 kcal Electronic energy + Delta-G solvation = -25459.856254 eV Core-core repulsion = 21801.141310 eV Total energy + Delta-G solvation = -3658.714945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.72143 -39.65309 -37.74351 -36.96496 -34.59503 -33.74830 -32.17426 -31.35627 -30.47626 -27.83153 -27.22424 -26.56430 -26.25696 -23.58581 -22.98162 -22.16404 -20.54985 -20.26689 -18.89062 -18.39206 -17.40136 -16.88404 -16.64317 -16.30540 -15.70042 -15.20779 -15.13795 -14.75653 -14.32697 -13.93708 -13.93189 -13.80684 -13.68695 -13.50927 -13.11359 -12.90057 -12.71083 -12.66090 -12.32991 -12.25885 -11.72598 -11.54298 -11.24465 -11.16730 -11.12173 -11.00834 -10.61956 -10.49123 -10.09061 -9.98784 -9.97210 -9.74305 -9.46408 -9.40379 -8.99559 -8.88189 -8.53405 -8.50167 -6.04096 -4.01392 0.68841 1.02610 1.48828 2.81531 2.84964 3.31891 3.34822 3.40068 3.44145 3.70464 4.21043 4.41935 4.44872 4.45940 4.52406 4.69630 4.75721 4.85014 4.95598 5.05079 5.22253 5.27998 5.28504 5.38443 5.52644 5.62994 5.67234 5.84709 5.92790 5.95535 6.01831 6.07790 6.10103 6.11689 6.21362 6.30905 6.31072 6.47565 6.59184 6.68494 6.89679 6.95555 7.01289 7.04714 7.20087 7.36684 7.65751 7.79520 8.34216 8.52974 8.99849 9.58616 11.08559 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.037407 B = 0.002060 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.346767 B =13586.975379 C =14103.055381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.158 4.158 3 C 0.084 3.916 4 O -0.308 6.308 5 C 0.151 3.849 6 C -0.219 4.219 7 C -0.019 4.019 8 C -0.168 4.168 9 C 0.555 3.445 10 O -0.547 6.547 11 N -0.716 5.716 12 C 0.126 3.874 13 C -0.064 4.064 14 C -0.129 4.129 15 C -0.129 4.129 16 C -0.002 4.002 17 C -0.511 4.511 18 H 0.078 0.922 19 C 0.067 3.933 20 N -0.904 5.904 21 Si 0.875 3.125 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.265 1.265 25 C -0.045 4.045 26 C -0.158 4.158 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.121 0.879 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.398 0.602 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.030 0.970 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.030 0.970 43 H 0.018 0.982 44 H 0.014 0.986 45 H 0.262 0.738 46 H 0.135 0.865 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.947 -16.646 -11.252 30.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C 0.010 3.990 4 O -0.222 6.222 5 C 0.105 3.895 6 C -0.238 4.238 7 C -0.038 4.038 8 C -0.172 4.172 9 C 0.342 3.658 10 O -0.426 6.426 11 N -0.368 5.368 12 C 0.003 3.997 13 C -0.064 4.064 14 C -0.187 4.187 15 C -0.186 4.186 16 C -0.040 4.040 17 C -0.549 4.549 18 H 0.096 0.904 19 C -0.134 4.134 20 N -0.543 5.543 21 Si 0.702 3.298 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.190 1.190 25 C -0.064 4.064 26 C -0.176 4.176 27 H 0.118 0.882 28 H 0.127 0.873 29 H 0.139 0.861 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.235 0.765 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.037 0.963 44 H 0.032 0.968 45 H 0.072 0.928 46 H 0.153 0.847 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -22.917 -16.030 -11.539 30.253 hybrid contribution 0.080 0.705 -0.282 0.763 sum -22.836 -15.325 -11.821 29.934 Atomic orbital electron populations 1.23916 0.95418 1.02711 0.98594 1.22659 0.95671 0.97728 1.01512 1.21895 0.87816 0.97070 0.92247 1.86052 1.41978 1.35707 1.58430 1.19236 0.90529 0.85652 0.94094 1.21210 1.04062 0.94147 1.04399 1.21061 0.91101 0.97322 0.94306 1.19955 1.00017 0.95270 1.01929 1.18142 0.80471 0.87090 0.80069 1.90763 1.71125 1.35284 1.45424 1.46090 1.31246 1.18653 1.40792 1.21668 0.91807 0.86412 0.99835 1.20707 0.93911 0.98561 0.93265 1.21783 0.99995 0.99186 0.97688 1.21781 0.99519 0.95412 1.01917 1.19588 0.94786 0.91959 0.97626 1.21079 1.11583 1.01936 1.20307 0.90387 1.24998 0.95198 0.98430 0.94803 1.69900 1.17658 1.34230 1.32479 0.86858 0.77192 0.84651 0.81069 1.20393 1.21511 1.18981 1.21170 0.97472 0.91286 0.96459 1.20352 0.95998 1.00195 1.01100 0.88159 0.87323 0.86136 0.91171 0.90710 0.84939 0.84303 0.76504 0.91657 0.91674 0.95070 0.90804 0.93331 0.93324 0.90803 0.95071 0.96331 0.96781 0.92802 0.84738 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.71 14.31 29.02 0.42 -0.30 16 2 C -0.16 -0.85 9.89 -36.03 -0.36 -1.21 16 3 C 0.08 0.52 5.15 36.00 0.19 0.71 16 4 O -0.31 -2.77 10.11 -18.81 -0.19 -2.96 16 5 C 0.15 1.45 6.70 -39.02 -0.26 1.19 16 6 C -0.22 -2.01 9.01 -39.49 -0.36 -2.37 16 7 C -0.02 -0.21 9.58 -39.22 -0.38 -0.59 16 8 C -0.17 -2.06 5.87 -104.96 -0.62 -2.67 16 9 C 0.56 8.41 7.76 -12.44 -0.10 8.31 16 10 O -0.55 -10.18 16.34 5.29 0.09 -10.10 16 11 N -0.72 -10.22 4.91 -61.33 -0.30 -10.52 16 12 C 0.13 2.12 4.56 -4.04 -0.02 2.10 16 13 C -0.06 -1.16 0.54 -154.51 -0.08 -1.25 16 14 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 15 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 16 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 17 C -0.51 -13.62 8.20 -34.44 -0.28 -13.90 16 18 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 19 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 20 N -0.90 -27.14 13.96 55.43 0.77 -26.36 16 21 Si 0.87 21.50 27.47 -169.99 -4.67 16.83 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 25 C -0.05 -0.45 9.53 -39.22 -0.37 -0.82 16 26 C -0.16 -1.48 9.97 -39.50 -0.39 -1.88 16 27 H 0.10 0.34 7.90 -52.49 -0.41 -0.07 16 28 H 0.11 0.33 8.06 -52.49 -0.42 -0.10 16 29 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 30 H 0.07 0.37 7.36 -51.93 -0.38 -0.01 16 31 H 0.07 0.39 7.66 -51.93 -0.40 -0.01 16 32 H 0.13 0.88 6.28 -52.48 -0.33 0.55 16 33 H 0.14 1.53 7.64 -52.49 -0.40 1.13 16 34 H 0.40 4.77 4.19 -40.82 -0.17 4.60 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 38 H 0.07 1.42 6.62 -51.93 -0.34 1.07 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.42 6.62 -51.93 -0.34 1.07 16 42 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 43 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 44 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.13 1.09 6.39 -52.48 -0.34 0.76 16 47 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 379.42 15.07 5.72 5.72 Total: -1.00 -32.19 379.42 -7.82 -40.01 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.04 Total: 2.22 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -2.20 Total: -14.85 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.47 Total: -36.88 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.10 Total: -13.05 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.19 -7.82 -40.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346025890.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.390 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds