Wall clock time and date at job start Tue Mar 31 2020 11:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00290 * 2 1 4 4 O 1.42896 * 109.47488 * 134.99823 * 3 2 1 5 5 C 1.35703 * 117.00248 * 179.97438 * 4 3 2 6 6 C 1.39001 * 119.91238 * 0.30191 * 5 4 3 7 7 C 1.37701 * 120.09036 * 180.25651 * 6 5 4 8 8 C 1.39740 * 119.91009 * 359.43945 * 7 6 5 9 9 C 1.47594 * 120.08984 * 180.30153 * 8 7 6 10 10 O 1.21587 * 119.99976 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00311 * 180.02562 * 9 8 7 12 12 C 1.46507 * 120.00361 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47163 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47205 * 300.00034 * 13 12 11 15 15 C 1.53010 * 109.47140 * 59.99953 * 13 12 11 16 16 C 1.52998 * 109.46978 * 179.97438 * 13 12 11 17 17 C 1.50700 * 109.47017 * 180.02562 * 16 13 12 18 18 H 1.07997 * 120.00322 * 0.02562 * 17 16 13 19 19 C 1.37878 * 120.00092 * 180.02562 * 17 16 13 20 20 N 1.31515 * 120.00223 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99790 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47012 * 90.00237 * 21 19 17 23 23 H 1.48502 * 109.46839 * 209.99890 * 21 19 17 24 24 H 1.48492 * 109.47066 * 329.99872 * 21 19 17 25 25 C 1.39733 * 119.82362 * 0.28485 * 8 7 6 26 26 C 1.37709 * 119.90833 * 359.97438 * 25 8 7 27 27 H 1.08002 * 119.99807 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.00372 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.99807 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.46861 * 14.99372 * 3 2 1 31 31 H 1.09005 * 109.46841 * 255.00330 * 3 2 1 32 32 H 1.08004 * 119.95747 * 359.97438 * 6 5 4 33 33 H 1.08002 * 120.04909 * 179.72495 * 7 6 5 34 34 H 0.97004 * 119.99698 * 359.97438 * 11 9 8 35 35 H 1.08999 * 109.46594 * 299.99752 * 12 11 9 36 36 H 1.08991 * 109.46752 * 59.99612 * 12 11 9 37 37 H 1.08996 * 109.47001 * 60.00319 * 14 13 12 38 38 H 1.08999 * 109.46953 * 179.97438 * 14 13 12 39 39 H 1.08997 * 109.46563 * 299.99950 * 14 13 12 40 40 H 1.08997 * 109.46647 * 60.00108 * 15 13 12 41 41 H 1.08999 * 109.46861 * 180.02562 * 15 13 12 42 42 H 1.08996 * 109.47045 * 299.99668 * 15 13 12 43 43 H 1.08999 * 109.47276 * 299.99675 * 16 13 12 44 44 H 1.09000 * 109.47060 * 60.00396 * 16 13 12 45 45 H 0.97000 * 120.00247 * 180.02562 * 20 19 17 46 46 H 1.08003 * 120.04691 * 180.02562 * 25 8 7 47 47 H 1.07999 * 119.95155 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9086 2.3433 1.0780 6 6 3.6518 3.4674 0.3017 7 6 4.4461 4.5857 0.4221 8 6 5.5044 4.5938 1.3346 9 6 6.3542 5.7927 1.4717 10 8 6.1336 6.7753 0.7904 11 7 7.3747 5.7984 2.3519 12 6 8.2179 6.9887 2.4884 13 6 9.2929 6.7336 3.5467 14 6 8.6249 6.4253 4.8882 15 6 10.1555 5.5436 3.1210 16 6 10.1738 7.9764 3.6887 17 6 11.2331 7.7249 4.7307 18 1 11.2742 6.7736 5.2403 19 6 12.1499 8.7093 5.0334 20 7 13.0746 8.4896 5.9424 21 14 12.0793 10.3544 4.1514 22 1 11.2030 11.2845 4.9080 23 1 13.4467 10.9264 4.0605 24 1 11.5321 10.1603 2.7847 25 6 5.7558 3.4638 2.1173 26 6 4.9600 2.3475 1.9870 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9352 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3855 2.1161 0.2659 31 1 2.4755 1.4867 -0.9927 32 1 2.8309 3.4620 -0.4002 33 1 4.2487 5.4571 -0.1846 34 1 7.5505 5.0146 2.8957 35 1 8.6934 7.2085 1.5325 36 1 7.6035 7.8362 2.7920 37 1 7.9977 5.5397 4.7867 38 1 9.3908 6.2431 5.6421 39 1 8.0105 7.2730 5.1914 40 1 10.6313 5.7633 2.1654 41 1 10.9210 5.3616 3.8753 42 1 9.5281 4.6580 3.0196 43 1 10.6498 8.1956 2.7329 44 1 9.5597 8.8244 3.9918 45 1 13.7193 9.1823 6.1556 46 1 6.5725 3.4663 2.8240 47 1 5.1534 1.4739 2.5919 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346025890.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:26 Heat of formation + Delta-G solvation = -60.222425 kcal Electronic energy + Delta-G solvation = -25460.672470 eV Core-core repulsion = 21801.141310 eV Total energy + Delta-G solvation = -3659.531160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.54804 -40.66765 -38.88550 -38.07208 -35.28295 -34.99882 -34.04696 -32.12009 -31.35980 -29.67504 -27.98120 -27.86294 -27.42780 -24.89713 -23.75373 -23.57530 -21.47204 -20.85023 -20.03923 -19.30293 -18.89904 -18.47672 -17.38981 -17.08031 -16.66093 -16.39659 -16.24625 -15.90249 -15.46841 -15.25320 -15.19710 -15.02985 -14.56777 -14.34370 -14.20821 -14.15192 -13.94137 -13.79992 -13.50147 -13.37118 -12.93125 -12.83713 -12.60908 -12.29941 -12.20109 -12.18289 -12.13338 -11.79207 -11.76026 -11.51434 -11.33098 -10.98572 -10.88250 -10.69827 -10.44847 -10.14981 -10.10354 -9.29151 -8.21745 -6.21712 -0.14783 0.29472 1.12338 1.36121 1.39050 1.48983 1.82749 2.19346 2.30007 2.39530 2.82129 3.13710 3.67865 3.74711 3.78215 3.90952 3.97690 4.06121 4.08075 4.14140 4.16616 4.29214 4.37183 4.50885 4.55372 4.64560 4.71097 4.77653 4.95345 4.95535 4.96866 5.01928 5.10334 5.11635 5.21533 5.29494 5.32264 5.35397 5.41681 5.46025 5.54893 5.56892 5.62354 5.69937 5.70062 5.77154 6.31098 6.38601 6.55576 6.85080 7.20721 7.40998 8.93673 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.037407 B = 0.002060 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.346767 B =13586.975379 C =14103.055381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.177 4.177 3 C 0.077 3.923 4 O -0.318 6.318 5 C 0.152 3.848 6 C -0.215 4.215 7 C -0.028 4.028 8 C -0.190 4.190 9 C 0.556 3.444 10 O -0.588 6.588 11 N -0.706 5.706 12 C 0.138 3.862 13 C -0.059 4.059 14 C -0.125 4.125 15 C -0.125 4.125 16 C -0.003 4.003 17 C -0.502 4.502 18 H 0.053 0.947 19 C 0.006 3.994 20 N -0.950 5.950 21 Si 0.933 3.067 22 H -0.272 1.272 23 H -0.289 1.289 24 H -0.252 1.252 25 C -0.039 4.039 26 C -0.162 4.162 27 H 0.109 0.891 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.156 0.844 33 H 0.133 0.867 34 H 0.411 0.589 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.047 0.953 42 H 0.069 0.931 43 H 0.015 0.985 44 H 0.013 0.987 45 H 0.262 0.738 46 H 0.154 0.846 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.279 -18.058 -12.332 33.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.195 4.195 3 C 0.003 3.997 4 O -0.231 6.231 5 C 0.105 3.895 6 C -0.234 4.234 7 C -0.047 4.047 8 C -0.193 4.193 9 C 0.345 3.655 10 O -0.471 6.471 11 N -0.358 5.358 12 C 0.014 3.986 13 C -0.060 4.060 14 C -0.182 4.182 15 C -0.182 4.182 16 C -0.041 4.041 17 C -0.540 4.540 18 H 0.072 0.928 19 C -0.190 4.190 20 N -0.592 5.592 21 Si 0.759 3.241 22 H -0.198 1.198 23 H -0.215 1.215 24 H -0.176 1.176 25 C -0.058 4.058 26 C -0.180 4.180 27 H 0.127 0.873 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.174 0.826 33 H 0.150 0.850 34 H 0.250 0.750 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.033 0.967 44 H 0.031 0.969 45 H 0.071 0.929 46 H 0.172 0.828 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -25.268 -17.477 -12.616 33.212 hybrid contribution 0.685 0.983 0.049 1.199 sum -24.583 -16.494 -12.567 32.160 Atomic orbital electron populations 1.24129 0.95110 1.03731 0.96708 1.22684 0.96124 0.97416 1.03254 1.22131 0.87428 0.97944 0.92180 1.86054 1.42468 1.35432 1.59149 1.19423 0.90473 0.85830 0.93742 1.21383 1.04190 0.93264 1.04546 1.21117 0.91396 0.97877 0.94313 1.19792 1.00637 0.94915 1.03941 1.18576 0.80307 0.87455 0.79137 1.90738 1.72236 1.37058 1.47039 1.45887 1.30760 1.18237 1.40965 1.21323 0.91407 0.87272 0.98615 1.20574 0.93903 0.96938 0.94542 1.21719 0.99588 1.00824 0.96096 1.21717 0.99305 0.96497 1.00689 1.19563 0.94431 0.94260 0.95864 1.21370 1.11883 1.00634 1.20102 0.92849 1.25819 0.95217 1.02198 0.95790 1.70037 1.19000 1.35510 1.34632 0.85908 0.77207 0.80494 0.80532 1.19776 1.21481 1.17614 1.21323 0.97877 0.90504 0.96060 1.20605 0.95702 1.00552 1.01168 0.87323 0.86170 0.86277 0.90133 0.89764 0.82627 0.84957 0.74995 0.92551 0.92489 0.91269 0.93395 0.93630 0.93672 0.93389 0.91268 0.96710 0.96851 0.92886 0.82832 0.82664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 14.31 67.78 0.97 0.00 16 2 C -0.18 -1.56 9.89 25.65 0.25 -1.31 16 3 C 0.08 0.77 5.15 71.24 0.37 1.14 16 4 O -0.32 -4.94 10.11 -90.23 -0.91 -5.85 16 5 C 0.15 2.53 6.70 22.63 0.15 2.69 16 6 C -0.22 -3.48 9.01 22.33 0.20 -3.28 16 7 C -0.03 -0.59 9.58 22.51 0.22 -0.37 16 8 C -0.19 -4.32 5.87 -20.08 -0.12 -4.44 16 9 C 0.56 16.18 7.76 86.71 0.67 16.85 16 10 O -0.59 -21.81 16.34 -3.99 -0.07 -21.87 16 11 N -0.71 -18.74 4.91 -466.22 -2.29 -21.02 16 12 C 0.14 4.46 4.56 86.38 0.39 4.86 16 13 C -0.06 -2.09 0.54 -52.18 -0.03 -2.12 16 14 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 15 C -0.12 -4.12 8.05 71.99 0.58 -3.54 16 16 C 0.00 -0.15 3.11 29.85 0.09 -0.06 16 17 C -0.50 -27.18 8.20 25.60 0.21 -26.97 16 18 H 0.05 3.10 5.92 -2.91 -0.02 3.09 16 19 C 0.01 0.35 5.47 84.65 0.46 0.81 16 20 N -0.95 -58.52 13.96 21.45 0.30 -58.22 16 21 Si 0.93 44.55 27.47 68.60 1.88 46.43 16 22 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 24 H -0.25 -11.40 6.54 99.48 0.65 -10.75 16 25 C -0.04 -0.67 9.53 22.51 0.21 -0.46 16 26 C -0.16 -2.58 9.97 22.33 0.22 -2.36 16 27 H 0.11 0.46 7.90 -2.91 -0.02 0.44 16 28 H 0.12 0.43 8.06 -2.91 -0.02 0.41 16 29 H 0.12 1.04 8.06 -2.91 -0.02 1.02 16 30 H 0.08 0.63 7.36 -2.38 -0.02 0.61 16 31 H 0.08 0.67 7.66 -2.38 -0.02 0.65 16 32 H 0.16 1.67 6.28 -2.91 -0.02 1.65 16 33 H 0.13 2.88 7.64 -2.91 -0.02 2.86 16 34 H 0.41 8.56 4.19 -92.71 -0.39 8.17 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 37 H 0.07 1.72 6.86 -2.39 -0.02 1.71 16 38 H 0.05 1.83 6.62 -2.39 -0.02 1.81 16 39 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.05 1.83 6.62 -2.39 -0.02 1.82 16 42 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 43 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 44 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 45 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 46 H 0.15 1.94 6.39 -2.91 -0.02 1.92 16 47 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -70.89 379.42 4.88 -66.00 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.52 Total: 16.64 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: 5.44 Total: -22.10 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -1.99 Total: -79.25 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.98 Total: -27.73 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Total: -70.89 4.88 -66.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346025890.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.780 kcal (2) G-P(sol) polarization free energy of solvation -70.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds