Wall clock time and date at job start Tue Mar 31 2020 12:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46904 * 2 1 4 4 C 1.53000 * 109.47447 * 119.99674 * 2 1 3 5 5 N 1.46504 * 109.47350 * 175.00159 * 4 2 1 6 6 C 1.46494 * 119.99715 * 283.72515 * 5 4 2 7 7 C 1.53008 * 109.46832 * 271.99168 * 6 5 4 8 8 C 1.52993 * 109.47058 * 56.18124 * 7 6 5 9 9 C 1.53003 * 109.47005 * 176.18285 * 7 6 5 10 10 S 1.65595 * 119.99749 * 103.72064 * 5 4 2 11 11 O 1.42096 * 104.28016 * 333.92728 * 10 5 4 12 12 O 1.42104 * 104.27826 * 206.06971 * 10 5 4 13 13 C 1.81396 * 104.44986 * 90.00464 * 10 5 4 14 14 C 1.53006 * 109.47253 * 186.27817 * 13 10 5 15 15 C 1.50700 * 115.54632 * 294.49980 * 14 13 10 16 16 H 1.08000 * 119.99573 * 95.59870 * 15 14 13 17 17 C 1.37873 * 120.00096 * 275.32042 * 15 14 13 18 18 N 1.31520 * 119.99963 * 355.56924 * 17 15 14 19 19 Si 1.86803 * 120.00152 * 175.56342 * 17 15 14 20 20 H 1.48503 * 109.46986 * 60.00088 * 19 17 15 21 21 H 1.48499 * 109.47418 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46908 * 300.00335 * 19 17 15 23 23 C 1.52994 * 117.50132 * 80.17079 * 14 13 10 24 24 C 1.53004 * 117.49964 * 148.83402 * 14 13 10 25 25 H 1.09007 * 109.47194 * 300.00164 * 1 2 3 26 26 H 1.09000 * 109.47632 * 60.00143 * 1 2 3 27 27 H 1.09006 * 109.47302 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47310 * 240.00043 * 2 1 3 29 29 H 1.08998 * 109.47102 * 59.99915 * 3 2 1 30 30 H 1.08996 * 109.47097 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46721 * 299.99575 * 3 2 1 32 32 H 1.08999 * 109.46960 * 54.99679 * 4 2 1 33 33 H 1.09004 * 109.47119 * 295.00157 * 4 2 1 34 34 H 1.08993 * 109.47715 * 31.99032 * 6 5 4 35 35 H 1.09002 * 109.47109 * 151.99595 * 6 5 4 36 36 H 1.08998 * 109.46942 * 296.17922 * 7 6 5 37 37 H 1.09003 * 109.47389 * 171.92413 * 8 7 6 38 38 H 1.08998 * 109.47357 * 291.91971 * 8 7 6 39 39 H 1.08999 * 109.47041 * 51.92188 * 8 7 6 40 40 H 1.09002 * 109.47334 * 60.00116 * 9 7 6 41 41 H 1.09004 * 109.46907 * 180.02562 * 9 7 6 42 42 H 1.09003 * 109.46928 * 300.00102 * 9 7 6 43 43 H 1.08992 * 109.47496 * 66.27271 * 13 10 5 44 44 H 1.09007 * 109.46903 * 306.27245 * 13 10 5 45 45 H 0.96998 * 119.99368 * 185.00417 * 18 17 15 46 46 H 1.09001 * 117.50076 * 215.00014 * 23 14 13 47 47 H 1.09008 * 117.50009 * 0.02899 * 23 14 13 48 48 H 1.09001 * 117.49827 * 359.97434 * 24 14 13 49 49 H 1.08994 * 117.49546 * 144.97173 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1906 6 6 4.1284 -1.8172 0.3135 7 6 4.2755 -3.1423 1.0641 8 6 2.9056 -3.5944 1.5739 9 6 4.8437 -4.2033 0.1195 10 16 4.4401 0.1752 2.1157 11 8 3.6320 1.3264 2.3180 12 8 5.6683 0.2577 1.4057 13 6 4.6650 -0.7265 3.6735 14 6 5.3931 0.1672 4.6796 15 6 6.8103 0.5312 4.3190 16 1 7.0171 1.4657 3.8186 17 6 7.8434 -0.3261 4.6330 18 7 7.6039 -1.4193 5.3237 19 14 9.5834 0.0652 4.0773 20 1 10.0074 1.3653 4.6564 21 1 10.5030 -1.0059 4.5382 22 1 9.6230 0.1471 2.5951 23 6 4.5627 1.2138 5.4252 24 6 5.0694 -0.0286 6.1621 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6054 -1.7197 1.2953 33 1 1.7516 -0.1582 2.1370 34 1 3.5071 -1.9668 -0.5695 35 1 5.1126 -1.4609 0.0091 36 1 4.9514 -3.0084 1.9087 37 1 2.9840 -4.6023 1.9815 38 1 2.5649 -2.9129 2.3533 39 1 2.1919 -3.5901 0.7501 40 1 5.8197 -3.8812 -0.2437 41 1 4.9481 -5.1474 0.6541 42 1 4.1678 -4.3371 -0.7252 43 1 5.2551 -1.6246 3.4916 44 1 3.6910 -1.0069 4.0749 45 1 8.3393 -1.9848 5.6070 46 1 5.0415 2.1657 5.6549 47 1 3.4976 1.2654 5.1993 48 1 4.3374 -0.7937 6.4207 49 1 5.8815 0.1056 6.8765 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346452361.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:17 Heat of formation + Delta-G solvation = -70.584473 kcal Electronic energy + Delta-G solvation = -27456.331356 eV Core-core repulsion = 23931.794814 eV Total energy + Delta-G solvation = -3524.536541 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.20022 -36.73098 -36.48756 -35.32940 -34.99117 -32.52739 -32.01551 -28.20932 -27.55688 -26.99356 -26.63224 -25.46663 -24.23585 -21.16561 -20.48192 -20.01598 -19.34437 -18.14610 -17.09764 -16.53244 -15.99870 -15.35339 -14.89914 -14.75447 -14.59639 -14.34599 -14.04310 -13.79320 -13.54687 -13.14519 -12.93063 -12.56600 -12.38126 -12.13953 -11.99266 -11.94555 -11.81278 -11.77660 -11.57450 -11.33929 -11.16717 -11.10301 -11.01354 -10.93117 -10.88762 -10.70981 -10.67210 -10.56778 -10.45444 -10.40389 -10.31014 -10.05048 -9.60923 -9.03444 -8.67728 -8.51364 -8.03164 -6.11114 -4.23376 1.08194 3.33237 3.35335 3.36753 3.44673 4.38873 4.61953 4.78758 4.84707 4.92165 5.02136 5.05474 5.08179 5.14940 5.18577 5.25472 5.35903 5.55263 5.63105 5.66635 5.68931 5.72918 5.74086 5.83101 5.88222 5.91568 5.97241 5.99152 6.02798 6.05001 6.16531 6.18805 6.24146 6.29567 6.36553 6.37461 6.45233 6.50938 6.64863 6.65638 6.74993 6.96840 7.03809 7.26016 7.47174 7.81413 8.22341 8.81966 9.47975 10.95439 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014021 B = 0.005589 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.568263 B = 5008.903724 C = 5724.835428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C -0.142 4.142 4 C 0.120 3.880 5 N -1.005 6.005 6 C 0.122 3.878 7 C -0.126 4.126 8 C -0.144 4.144 9 C -0.143 4.143 10 S 2.604 3.396 11 O -0.965 6.965 12 O -0.951 6.951 13 C -0.555 4.555 14 C 0.040 3.960 15 C -0.514 4.514 16 H 0.066 0.934 17 C 0.081 3.919 18 N -0.875 5.875 19 Si 0.887 3.113 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.267 1.267 23 C -0.209 4.209 24 C -0.135 4.135 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.128 0.872 44 H 0.096 0.904 45 H 0.263 0.737 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.064 0.936 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.334 -4.515 -8.933 15.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 C -0.200 4.200 4 C -0.006 4.006 5 N -0.839 5.839 6 C -0.004 4.004 7 C -0.146 4.146 8 C -0.201 4.201 9 C -0.201 4.201 10 S 2.702 3.298 11 O -0.955 6.955 12 O -0.941 6.941 13 C -0.688 4.688 14 C 0.038 3.962 15 C -0.551 4.551 16 H 0.084 0.916 17 C -0.124 4.124 18 N -0.510 5.510 19 Si 0.714 3.286 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.192 1.192 23 C -0.246 4.246 24 C -0.174 4.174 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.146 0.854 44 H 0.115 0.885 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.092 0.908 48 H 0.082 0.918 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.937 -3.876 -9.230 15.579 hybrid contribution 0.853 -0.629 0.263 1.092 sum -11.083 -4.506 -8.967 14.952 Atomic orbital electron populations 1.21782 0.95057 1.01412 1.01979 1.21476 0.95368 0.97447 0.98864 1.21839 1.01272 0.95227 1.01652 1.21507 0.79700 1.00828 0.98517 1.57860 1.15305 1.52939 1.57813 1.21366 0.99262 0.87140 0.92610 1.21691 0.97928 0.95509 0.99470 1.21910 0.96483 1.00831 1.00881 1.21753 1.00944 0.98345 0.99060 1.05318 0.73170 0.74834 0.76504 1.93505 1.69047 1.46065 1.86911 1.93518 1.44433 1.85644 1.70550 1.30092 1.06691 1.13278 1.18709 1.18279 0.93530 0.94584 0.89818 1.20479 0.88886 1.05172 1.40562 0.91576 1.24942 0.99185 0.94259 0.93965 1.69998 1.32035 1.13342 1.35634 0.86703 0.83582 0.78102 0.80212 1.19931 1.21109 1.19187 1.23186 0.98024 0.94783 1.08606 1.22513 1.01013 0.96893 0.97016 0.92421 0.92697 0.92867 0.91235 0.91320 0.93094 0.93594 0.90480 0.89962 0.90623 0.88969 0.90436 0.92994 0.92201 0.92842 0.92313 0.92535 0.92829 0.85392 0.88518 0.92753 0.89642 0.90813 0.91769 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.19 37.15 0.34 -1.01 16 2 C -0.11 -1.31 3.03 -90.62 -0.27 -1.58 16 3 C -0.14 -2.01 7.82 37.16 0.29 -1.72 16 4 C 0.12 1.51 4.20 -4.04 -0.02 1.49 16 5 N -1.01 -15.20 2.00 -114.38 -0.23 -15.43 16 6 C 0.12 1.66 5.16 -4.04 -0.02 1.64 16 7 C -0.13 -1.60 3.19 -90.62 -0.29 -1.89 16 8 C -0.14 -1.58 7.63 37.15 0.28 -1.29 16 9 C -0.14 -1.55 9.19 37.16 0.34 -1.21 16 10 S 2.60 52.67 4.59 -107.50 -0.49 52.18 16 11 O -0.96 -20.43 14.28 -57.54 -0.82 -21.25 16 12 O -0.95 -22.70 16.24 -57.54 -0.93 -23.63 16 13 C -0.56 -11.70 6.03 37.16 0.22 -11.47 16 14 C 0.04 0.99 1.41 -155.66 -0.22 0.77 16 15 C -0.51 -14.18 8.21 -34.44 -0.28 -14.47 16 16 H 0.07 1.87 7.82 -52.49 -0.41 1.46 16 17 C 0.08 2.23 5.43 -17.82 -0.10 2.14 16 18 N -0.87 -24.16 12.67 55.43 0.70 -23.46 16 19 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 23 C -0.21 -4.63 9.96 -26.69 -0.27 -4.90 16 24 C -0.14 -3.12 9.17 -26.69 -0.24 -3.37 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.77 7.39 -51.93 -0.38 0.39 16 29 H 0.07 1.03 7.70 -51.93 -0.40 0.63 16 30 H 0.05 0.84 6.50 -51.93 -0.34 0.50 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.79 5.21 -51.93 -0.27 0.52 16 33 H 0.08 1.08 7.30 -51.93 -0.38 0.70 16 34 H 0.08 0.84 7.34 -51.93 -0.38 0.46 16 35 H 0.09 1.41 6.87 -51.93 -0.36 1.06 16 36 H 0.08 1.17 7.10 -51.93 -0.37 0.80 16 37 H 0.05 0.54 8.13 -51.93 -0.42 0.12 16 38 H 0.06 0.68 6.47 -51.93 -0.34 0.34 16 39 H 0.05 0.50 7.62 -51.93 -0.40 0.11 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.13 2.81 7.10 -51.93 -0.37 2.44 16 44 H 0.10 1.73 8.09 -51.92 -0.42 1.31 16 45 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 46 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 47 H 0.07 1.48 8.14 -51.92 -0.42 1.06 16 48 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 49 H 0.09 2.19 8.14 -51.93 -0.42 1.76 16 LS Contribution 388.80 15.07 5.86 5.86 Total: -1.00 -31.12 388.80 -10.19 -41.31 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -9.02 Total: 4.77 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: -0.23 Total: -36.88 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.47 Total: -38.89 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -1.76 Total: -44.88 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 52.67 SS G_CDS: -0.49 Total: 52.18 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.12 -10.19 -41.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346452361.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.278 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds