Wall clock time and date at job start Tue Mar 31 2020 12:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46904 * 2 1 4 4 C 1.53000 * 109.47447 * 119.99674 * 2 1 3 5 5 N 1.46504 * 109.47350 * 175.00159 * 4 2 1 6 6 C 1.46494 * 119.99715 * 283.72515 * 5 4 2 7 7 C 1.53008 * 109.46832 * 271.99168 * 6 5 4 8 8 C 1.52993 * 109.47058 * 56.18124 * 7 6 5 9 9 C 1.53003 * 109.47005 * 176.18285 * 7 6 5 10 10 S 1.65595 * 119.99749 * 103.72064 * 5 4 2 11 11 O 1.42096 * 104.28016 * 333.92728 * 10 5 4 12 12 O 1.42104 * 104.27826 * 206.06971 * 10 5 4 13 13 C 1.81396 * 104.44986 * 90.00464 * 10 5 4 14 14 C 1.53006 * 109.47253 * 186.27817 * 13 10 5 15 15 C 1.50700 * 115.54632 * 294.49980 * 14 13 10 16 16 H 1.08000 * 119.99573 * 95.59870 * 15 14 13 17 17 C 1.37873 * 120.00096 * 275.32042 * 15 14 13 18 18 N 1.31520 * 119.99963 * 355.56924 * 17 15 14 19 19 Si 1.86803 * 120.00152 * 175.56342 * 17 15 14 20 20 H 1.48503 * 109.46986 * 60.00088 * 19 17 15 21 21 H 1.48499 * 109.47418 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46908 * 300.00335 * 19 17 15 23 23 C 1.52994 * 117.50132 * 80.17079 * 14 13 10 24 24 C 1.53004 * 117.49964 * 148.83402 * 14 13 10 25 25 H 1.09007 * 109.47194 * 300.00164 * 1 2 3 26 26 H 1.09000 * 109.47632 * 60.00143 * 1 2 3 27 27 H 1.09006 * 109.47302 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47310 * 240.00043 * 2 1 3 29 29 H 1.08998 * 109.47102 * 59.99915 * 3 2 1 30 30 H 1.08996 * 109.47097 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46721 * 299.99575 * 3 2 1 32 32 H 1.08999 * 109.46960 * 54.99679 * 4 2 1 33 33 H 1.09004 * 109.47119 * 295.00157 * 4 2 1 34 34 H 1.08993 * 109.47715 * 31.99032 * 6 5 4 35 35 H 1.09002 * 109.47109 * 151.99595 * 6 5 4 36 36 H 1.08998 * 109.46942 * 296.17922 * 7 6 5 37 37 H 1.09003 * 109.47389 * 171.92413 * 8 7 6 38 38 H 1.08998 * 109.47357 * 291.91971 * 8 7 6 39 39 H 1.08999 * 109.47041 * 51.92188 * 8 7 6 40 40 H 1.09002 * 109.47334 * 60.00116 * 9 7 6 41 41 H 1.09004 * 109.46907 * 180.02562 * 9 7 6 42 42 H 1.09003 * 109.46928 * 300.00102 * 9 7 6 43 43 H 1.08992 * 109.47496 * 66.27271 * 13 10 5 44 44 H 1.09007 * 109.46903 * 306.27245 * 13 10 5 45 45 H 0.96998 * 119.99368 * 185.00417 * 18 17 15 46 46 H 1.09001 * 117.50076 * 215.00014 * 23 14 13 47 47 H 1.09008 * 117.50009 * 0.02899 * 23 14 13 48 48 H 1.09001 * 117.49827 * 359.97434 * 24 14 13 49 49 H 1.08994 * 117.49546 * 144.97173 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1906 6 6 4.1284 -1.8172 0.3135 7 6 4.2755 -3.1423 1.0641 8 6 2.9056 -3.5944 1.5739 9 6 4.8437 -4.2033 0.1195 10 16 4.4401 0.1752 2.1157 11 8 3.6320 1.3264 2.3180 12 8 5.6683 0.2577 1.4057 13 6 4.6650 -0.7265 3.6735 14 6 5.3931 0.1672 4.6796 15 6 6.8103 0.5312 4.3190 16 1 7.0171 1.4657 3.8186 17 6 7.8434 -0.3261 4.6330 18 7 7.6039 -1.4193 5.3237 19 14 9.5834 0.0652 4.0773 20 1 10.0074 1.3653 4.6564 21 1 10.5030 -1.0059 4.5382 22 1 9.6230 0.1471 2.5951 23 6 4.5627 1.2138 5.4252 24 6 5.0694 -0.0286 6.1621 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6054 -1.7197 1.2953 33 1 1.7516 -0.1582 2.1370 34 1 3.5071 -1.9668 -0.5695 35 1 5.1126 -1.4609 0.0091 36 1 4.9514 -3.0084 1.9087 37 1 2.9840 -4.6023 1.9815 38 1 2.5649 -2.9129 2.3533 39 1 2.1919 -3.5901 0.7501 40 1 5.8197 -3.8812 -0.2437 41 1 4.9481 -5.1474 0.6541 42 1 4.1678 -4.3371 -0.7252 43 1 5.2551 -1.6246 3.4916 44 1 3.6910 -1.0069 4.0749 45 1 8.3393 -1.9848 5.6070 46 1 5.0415 2.1657 5.6549 47 1 3.4976 1.2654 5.1993 48 1 4.3374 -0.7937 6.4207 49 1 5.8815 0.1056 6.8765 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346452361.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:16 Heat of formation + Delta-G solvation = -88.230783 kcal Electronic energy + Delta-G solvation = -27457.096557 eV Core-core repulsion = 23931.794814 eV Total energy + Delta-G solvation = -3525.301743 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.26647 -38.58065 -38.08090 -36.77999 -36.28574 -34.10075 -33.58559 -29.90806 -28.52859 -27.89725 -27.57142 -27.52508 -25.33883 -22.98874 -21.67287 -21.21246 -20.87041 -19.58045 -18.54354 -18.36618 -17.36572 -16.93271 -16.69427 -15.99577 -15.91724 -15.70232 -15.42606 -15.14846 -14.89671 -14.50230 -13.96307 -13.81100 -13.73886 -13.57898 -13.34241 -13.16139 -13.10126 -12.94525 -12.87998 -12.85022 -12.78717 -12.57183 -12.50259 -12.45377 -12.39566 -12.17148 -11.95351 -11.83574 -11.75310 -11.61386 -11.51008 -11.44859 -11.29619 -10.99571 -10.53410 -10.06516 -9.65588 -8.20693 -6.37024 -0.50108 1.34388 1.38438 1.46228 1.96940 2.36773 3.01310 3.06508 3.34650 3.42371 3.69377 3.94751 3.99238 4.05353 4.10402 4.15543 4.21186 4.28728 4.40192 4.49713 4.58320 4.64269 4.70186 4.75958 4.82826 4.87820 4.88592 4.91585 4.96088 4.96425 4.99045 5.08812 5.10125 5.13668 5.19889 5.25562 5.29660 5.34425 5.39958 5.46647 5.50407 5.53372 5.60630 5.60857 5.69129 5.85549 6.20325 6.69000 7.35331 8.85257 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014021 B = 0.005589 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.568263 B = 5008.903724 C = 5724.835428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.146 4.146 4 C 0.111 3.889 5 N -0.993 5.993 6 C 0.118 3.882 7 C -0.127 4.127 8 C -0.143 4.143 9 C -0.141 4.141 10 S 2.616 3.384 11 O -0.979 6.979 12 O -0.997 6.997 13 C -0.553 4.553 14 C 0.008 3.992 15 C -0.533 4.533 16 H 0.045 0.955 17 C 0.043 3.957 18 N -0.891 5.891 19 Si 0.929 3.071 20 H -0.267 1.267 21 H -0.270 1.270 22 H -0.277 1.277 23 C -0.196 4.196 24 C -0.132 4.132 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.019 0.981 31 H 0.062 0.938 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.066 0.934 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.128 0.872 45 H 0.265 0.735 46 H 0.079 0.921 47 H 0.099 0.901 48 H 0.086 0.914 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.792 -5.972 -10.000 18.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.204 4.204 4 C -0.014 4.014 5 N -0.830 5.830 6 C -0.007 4.007 7 C -0.148 4.148 8 C -0.200 4.200 9 C -0.199 4.199 10 S 2.714 3.286 11 O -0.969 6.969 12 O -0.987 6.987 13 C -0.685 4.685 14 C 0.006 3.994 15 C -0.571 4.571 16 H 0.063 0.937 17 C -0.160 4.160 18 N -0.527 5.527 19 Si 0.754 3.246 20 H -0.192 1.192 21 H -0.195 1.195 22 H -0.203 1.203 23 C -0.233 4.233 24 C -0.171 4.171 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.129 0.871 33 H 0.095 0.905 34 H 0.129 0.871 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.132 0.868 44 H 0.146 0.854 45 H 0.075 0.925 46 H 0.098 0.902 47 H 0.117 0.883 48 H 0.104 0.896 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.389 -5.326 -10.271 18.464 hybrid contribution 1.567 -0.152 0.547 1.667 sum -12.822 -5.478 -9.725 16.999 Atomic orbital electron populations 1.21750 0.92734 1.02934 1.02345 1.21496 0.97190 0.95447 0.98745 1.21871 0.99232 0.97467 1.01795 1.21873 0.77634 1.02877 0.98989 1.57451 1.16197 1.52603 1.56738 1.21546 0.98712 0.86844 0.93562 1.21679 0.98755 0.95632 0.98705 1.21915 0.95493 1.00946 1.01617 1.21745 1.00894 0.97753 0.99489 1.04622 0.72632 0.75094 0.76268 1.93477 1.68967 1.47286 1.87161 1.93455 1.47252 1.86576 1.71460 1.29993 1.07589 1.12015 1.18904 1.18412 0.93030 0.96688 0.91265 1.20658 0.91235 1.04610 1.40581 0.93710 1.25488 1.01917 0.94393 0.94166 1.70041 1.32794 1.13698 1.36170 0.86049 0.80744 0.78680 0.79109 1.19211 1.19477 1.20295 1.23223 0.99057 0.94046 1.06968 1.22448 1.00880 0.98037 0.95783 0.92670 0.91839 0.90747 0.90043 0.92784 0.96216 0.91916 0.87125 0.90480 0.87076 0.91537 0.93795 0.92390 0.92668 0.90323 0.93423 0.92026 0.90361 0.86823 0.85378 0.92547 0.90193 0.88274 0.89596 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.19 71.98 0.66 -1.41 16 2 C -0.11 -2.23 3.03 -10.79 -0.03 -2.26 16 3 C -0.15 -3.97 7.82 71.98 0.56 -3.41 16 4 C 0.11 2.48 4.20 86.38 0.36 2.84 16 5 N -0.99 -28.94 2.00 -515.78 -1.03 -29.97 16 6 C 0.12 3.07 5.16 86.38 0.45 3.51 16 7 C -0.13 -3.08 3.19 -10.79 -0.03 -3.11 16 8 C -0.14 -2.67 7.63 71.98 0.55 -2.12 16 9 C -0.14 -2.81 9.19 71.98 0.66 -2.15 16 10 S 2.62 107.42 4.59 -56.49 -0.26 107.17 16 11 O -0.98 -41.78 14.28 -127.65 -1.82 -43.61 16 12 O -1.00 -49.73 16.24 -127.65 -2.07 -51.80 16 13 C -0.55 -23.41 6.03 71.98 0.43 -22.97 16 14 C 0.01 0.40 1.41 -52.93 -0.07 0.33 16 15 C -0.53 -30.40 8.21 25.60 0.21 -30.19 16 16 H 0.04 2.66 7.82 -2.91 -0.02 2.64 16 17 C 0.04 2.43 5.43 84.65 0.46 2.89 16 18 N -0.89 -50.00 12.67 21.45 0.27 -49.73 16 19 Si 0.93 45.00 29.54 68.60 2.03 47.03 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 22 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 23 C -0.20 -8.63 9.96 30.62 0.30 -8.32 16 24 C -0.13 -6.10 9.17 30.62 0.28 -5.82 16 25 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.08 1.50 7.39 -2.39 -0.02 1.48 16 29 H 0.05 1.59 7.70 -2.39 -0.02 1.58 16 30 H 0.02 0.63 6.50 -2.39 -0.02 0.62 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.11 1.77 5.21 -2.39 -0.01 1.76 16 33 H 0.08 1.84 7.30 -2.38 -0.02 1.82 16 34 H 0.11 2.10 7.34 -2.39 -0.02 2.08 16 35 H 0.07 2.08 6.87 -2.39 -0.02 2.07 16 36 H 0.04 1.35 7.10 -2.39 -0.02 1.33 16 37 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 38 H 0.05 1.08 6.47 -2.39 -0.02 1.06 16 39 H 0.08 1.08 7.62 -2.39 -0.02 1.06 16 40 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.11 5.13 7.10 -2.39 -0.02 5.11 16 44 H 0.13 4.43 8.09 -2.39 -0.02 4.41 16 45 H 0.27 14.15 8.32 -92.71 -0.77 13.38 16 46 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 47 H 0.10 3.82 8.14 -2.38 -0.02 3.80 16 48 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 49 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -69.66 388.80 2.79 -66.87 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.89 Total: 26.24 kcal Atomic # 6 Polarization: -76.98 SS G_CDS: 4.79 Total: -72.19 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -0.76 Total: -79.70 kcal Atomic # 8 Polarization: -91.51 SS G_CDS: -3.90 Total: -95.41 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 107.42 SS G_CDS: -0.26 Total: 107.17 kcal Total: -69.66 2.79 -66.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346452361.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.366 kcal (2) G-P(sol) polarization free energy of solvation -69.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds