Wall clock time and date at job start Tue Mar 31 2020 11:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47503 * 2 1 4 4 C 1.53007 * 109.47296 * 239.99838 * 2 1 3 5 5 C 1.53005 * 109.47253 * 120.00208 * 2 1 3 6 6 N 1.46501 * 109.47051 * 48.35249 * 5 2 1 7 7 C 1.46499 * 119.99807 * 272.91450 * 6 5 2 8 8 C 1.50703 * 109.46819 * 274.49979 * 7 6 5 9 9 H 1.07999 * 120.00321 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99946 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00240 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99779 * 359.97438 * 10 8 7 13 13 H 1.48510 * 109.47176 * 90.00410 * 12 10 8 14 14 H 1.48504 * 109.47151 * 210.00108 * 12 10 8 15 15 H 1.48503 * 109.47460 * 330.00295 * 12 10 8 16 16 S 1.65600 * 119.99773 * 92.91254 * 6 5 2 17 17 O 1.42101 * 104.27613 * 122.99425 * 16 6 5 18 18 O 1.42098 * 104.27952 * 355.13403 * 16 6 5 19 19 C 1.81404 * 104.44823 * 239.06300 * 16 6 5 20 20 C 1.52995 * 109.47117 * 171.23433 * 19 16 6 21 21 C 1.53001 * 109.47212 * 180.02562 * 20 19 16 22 22 C 1.53774 * 113.61439 * 85.86525 * 21 20 19 23 23 C 1.54048 * 86.98508 * 140.02111 * 22 21 20 24 24 C 1.53775 * 87.07729 * 334.56686 * 23 22 21 25 25 H 1.09003 * 109.47033 * 302.03562 * 1 2 3 26 26 H 1.09000 * 109.46964 * 62.03894 * 1 2 3 27 27 H 1.08997 * 109.47052 * 182.03975 * 1 2 3 28 28 H 1.09001 * 109.47366 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46947 * 300.00549 * 3 2 1 30 30 H 1.09005 * 109.46949 * 59.99673 * 3 2 1 31 31 H 1.08994 * 109.47035 * 293.26273 * 4 2 1 32 32 H 1.09003 * 109.46253 * 53.25819 * 4 2 1 33 33 H 1.08993 * 109.47276 * 173.25529 * 4 2 1 34 34 H 1.08999 * 109.47186 * 288.35292 * 5 2 1 35 35 H 1.09002 * 109.47123 * 168.35553 * 5 2 1 36 36 H 1.08998 * 109.47585 * 34.50019 * 7 6 5 37 37 H 1.08999 * 109.47074 * 154.50424 * 7 6 5 38 38 H 0.97001 * 120.00405 * 180.02562 * 11 10 8 39 39 H 1.08999 * 109.47015 * 51.23809 * 19 16 6 40 40 H 1.08998 * 109.47211 * 291.23867 * 19 16 6 41 41 H 1.09007 * 109.46763 * 59.99983 * 20 19 16 42 42 H 1.08998 * 109.47435 * 300.00297 * 20 19 16 43 43 H 1.08997 * 112.84677 * 314.66528 * 21 20 19 44 44 H 1.09003 * 113.61285 * 254.61270 * 22 21 20 45 45 H 1.08993 * 113.61860 * 25.51668 * 22 21 20 46 46 H 1.08998 * 113.61733 * 220.02016 * 23 22 21 47 47 H 1.08998 * 113.61409 * 89.11450 * 23 22 21 48 48 H 1.09004 * 113.61825 * 270.87984 * 24 23 22 49 49 H 1.08998 * 113.68932 * 139.99075 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.3374 -1.9983 1.3968 7 6 0.0597 -2.0530 2.1114 8 6 0.3165 -2.2009 3.5890 9 1 1.3301 -2.2497 3.9588 10 6 -0.7425 -2.2750 4.4688 11 7 -0.5184 -2.4035 5.7583 12 14 -2.4956 -2.1913 3.8293 13 1 -2.9767 -3.5624 3.5228 14 1 -3.3703 -1.5790 4.8614 15 1 -2.5335 -1.3660 2.5953 16 16 1.9875 -3.3799 0.7558 17 8 2.1019 -4.2607 1.8650 18 8 3.1391 -2.9324 0.0538 19 6 0.7271 -3.9774 -0.4040 20 6 1.2981 -5.1346 -1.2260 21 6 0.2353 -5.6381 -2.2047 22 6 0.1999 -4.8590 -3.5300 23 6 -0.0245 -6.2144 -4.2268 24 6 0.6818 -6.8608 -3.0235 25 1 -0.3633 0.5451 0.8712 26 1 -0.3633 0.4818 -0.9077 27 1 -0.3633 -1.0270 0.0366 28 1 3.1301 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.7785 -1.7778 -1.1910 32 1 1.5814 -0.2818 -2.1351 33 1 3.1232 -0.6180 -1.3117 34 1 1.8561 -0.1019 2.1270 35 1 3.1101 -0.9045 1.1516 36 1 -0.4979 -1.1343 1.9298 37 1 -0.5191 -2.9056 1.7562 38 1 -1.2634 -2.4560 6.3773 39 1 0.4346 -3.1671 -1.0718 40 1 -0.1444 -4.3222 0.1524 41 1 1.5907 -5.9449 -0.5582 42 1 2.1697 -4.7897 -1.7824 43 1 -0.7442 -5.7567 -1.7416 44 1 -0.6471 -4.1780 -3.6137 45 1 1.1493 -4.3886 -3.7856 46 1 0.5234 -6.3201 -5.1631 47 1 -1.0751 -6.4906 -4.3166 48 1 1.7628 -6.9368 -3.1407 49 1 0.2247 -7.7951 -2.6975 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346462255.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:27 Heat of formation + Delta-G solvation = -65.734333 kcal Electronic energy + Delta-G solvation = -27028.052067 eV Core-core repulsion = 23503.725843 eV Total energy + Delta-G solvation = -3524.326223 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.10712 -38.17572 -36.45835 -35.28319 -34.15605 -33.04861 -32.17381 -28.32052 -27.15622 -26.89755 -26.24776 -25.69197 -24.92072 -22.11126 -21.78686 -19.63138 -18.93380 -17.95546 -16.99358 -16.94871 -16.07963 -15.89262 -15.64314 -14.86304 -14.75896 -14.38773 -14.07392 -14.00032 -13.75644 -13.29069 -13.07612 -12.61724 -12.61540 -12.48868 -12.35381 -12.22002 -11.85352 -11.69243 -11.62287 -11.47590 -11.41415 -11.31859 -11.26718 -11.15202 -11.00104 -10.88092 -10.80857 -10.63639 -10.46842 -10.32312 -10.23111 -10.18407 -10.13354 -9.82595 -9.46198 -8.59474 -7.99678 -6.07097 -4.05386 0.80159 3.21324 3.26309 3.27334 3.34860 4.19151 4.35611 4.39168 4.44441 4.56788 4.60882 4.70030 4.90130 5.05913 5.09395 5.10417 5.21569 5.25856 5.26912 5.43077 5.56236 5.57443 5.62149 5.67299 5.70207 5.71851 5.78862 5.81726 5.84513 5.86353 5.95179 6.04175 6.08787 6.11940 6.14539 6.26406 6.33867 6.35790 6.40689 6.50825 6.60029 6.63532 6.76542 7.08137 7.39454 7.58007 8.51849 9.05443 9.51522 11.06711 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010890 B = 0.005465 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.443601 B = 5122.598200 C = 6196.227093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 C -0.136 4.136 4 C -0.136 4.136 5 C 0.141 3.859 6 N -0.977 5.977 7 C 0.217 3.783 8 C -0.525 4.525 9 H 0.083 0.917 10 C 0.072 3.928 11 N -0.894 5.894 12 Si 0.863 3.137 13 H -0.275 1.275 14 H -0.283 1.283 15 H -0.263 1.263 16 S 2.600 3.400 17 O -0.941 6.941 18 O -0.971 6.971 19 C -0.639 4.639 20 C -0.098 4.098 21 C -0.103 4.103 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.140 4.140 25 H 0.060 0.940 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.016 0.984 38 H 0.264 0.736 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.066 0.934 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.748 -0.484 -19.268 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.095 4.095 3 C -0.194 4.194 4 C -0.193 4.193 5 C 0.015 3.985 6 N -0.815 5.815 7 C 0.094 3.906 8 C -0.565 4.565 9 H 0.101 0.899 10 C -0.130 4.130 11 N -0.532 5.532 12 Si 0.690 3.310 13 H -0.200 1.200 14 H -0.209 1.209 15 H -0.188 1.188 16 S 2.693 3.307 17 O -0.931 6.931 18 O -0.961 6.961 19 C -0.767 4.767 20 C -0.137 4.137 21 C -0.122 4.122 22 C -0.177 4.177 23 C -0.180 4.180 24 C -0.178 4.178 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.034 0.966 38 H 0.074 0.926 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.112 0.888 44 H 0.085 0.915 45 H 0.101 0.899 46 H 0.084 0.916 47 H 0.097 0.903 48 H 0.101 0.899 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.481 -0.867 -18.849 18.926 hybrid contribution -1.860 0.064 -0.371 1.898 sum -0.379 -0.803 -19.219 19.240 Atomic orbital electron populations 1.22017 0.94564 1.02290 1.00983 1.21077 0.96262 0.95718 0.96407 1.21783 1.00890 0.95108 1.01594 1.21965 1.01666 0.99258 0.96396 1.21227 0.95679 0.84642 0.96985 1.57084 1.34907 1.21407 1.68062 1.19666 0.80366 0.97366 0.93246 1.21456 0.95916 1.50046 0.89045 0.89904 1.24883 0.98546 0.94826 0.94778 1.69893 1.31574 1.49963 1.01800 0.87064 0.85768 0.78861 0.79328 1.20044 1.20888 1.18789 1.05248 0.75461 0.74461 0.75500 1.93645 1.85102 1.66365 1.47952 1.93524 1.46293 1.80423 1.75849 1.30775 1.20273 1.09225 1.16416 1.21269 0.98653 0.95835 0.97954 1.22520 0.99182 0.96436 0.94091 1.23064 1.02286 0.96471 0.95922 1.22840 1.00740 0.96891 0.97533 1.22981 1.00863 0.97493 0.96460 0.92125 0.93681 0.92025 0.92626 0.92945 0.92402 0.93862 0.93385 0.91748 0.89522 0.90441 0.93626 0.96627 0.92604 0.85144 0.85032 0.90595 0.90288 0.88819 0.91480 0.89867 0.91555 0.90319 0.89918 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 6.97 37.15 0.26 -1.73 16 2 C -0.09 -1.30 0.86 -154.50 -0.13 -1.43 16 3 C -0.14 -1.61 8.44 37.16 0.31 -1.30 16 4 C -0.14 -1.80 7.37 37.16 0.27 -1.53 16 5 C 0.14 2.42 4.68 -4.04 -0.02 2.40 16 6 N -0.98 -18.92 2.05 -115.66 -0.24 -19.16 16 7 C 0.22 4.77 3.04 -5.19 -0.02 4.76 16 8 C -0.53 -14.55 9.94 -34.44 -0.34 -14.89 16 9 H 0.08 2.59 8.06 -52.49 -0.42 2.16 16 10 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 11 N -0.89 -27.20 13.96 55.43 0.77 -26.42 16 12 Si 0.86 20.28 27.47 -169.99 -4.67 15.62 16 13 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 15 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 16 S 2.60 48.32 4.38 -107.50 -0.47 47.85 16 17 O -0.94 -22.14 17.94 -57.54 -1.03 -23.18 16 18 O -0.97 -18.03 14.16 -57.54 -0.81 -18.85 16 19 C -0.64 -8.92 5.32 37.16 0.20 -8.72 16 20 C -0.10 -1.20 5.05 -26.73 -0.13 -1.34 16 21 C -0.10 -1.07 3.64 -89.81 -0.33 -1.40 16 22 C -0.14 -1.30 7.65 -25.78 -0.20 -1.50 16 23 C -0.14 -1.18 8.09 -25.78 -0.21 -1.39 16 24 C -0.14 -1.27 7.64 -25.92 -0.20 -1.46 16 25 H 0.06 0.90 7.50 -51.93 -0.39 0.51 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.90 5.93 -51.93 -0.31 0.59 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.04 0.59 3.68 -51.93 -0.19 0.40 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 1.55 8.05 -51.93 -0.42 1.13 16 35 H 0.08 1.31 7.04 -51.93 -0.37 0.95 16 36 H 0.05 0.95 4.57 -51.93 -0.24 0.72 16 37 H 0.02 0.33 6.35 -51.93 -0.33 0.00 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.13 1.56 6.79 -51.92 -0.35 1.21 16 40 H 0.13 1.80 7.46 -51.92 -0.39 1.41 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.08 0.90 7.87 -51.93 -0.41 0.49 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.76 7.92 -51.93 -0.41 0.35 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -33.01 380.19 -10.23 -43.24 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.88 Total: 2.76 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: -0.63 Total: -27.58 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.54 Total: -45.58 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -1.85 Total: -42.02 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.67 Total: 15.62 kcal Atomic # 16 Polarization: 48.32 SS G_CDS: -0.47 Total: 47.85 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.01 -10.23 -43.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346462255.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.495 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds