Wall clock time and date at job start Tue Mar 31 2020 11:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47503 * 2 1 4 4 C 1.53007 * 109.47296 * 239.99838 * 2 1 3 5 5 C 1.53005 * 109.47253 * 120.00208 * 2 1 3 6 6 N 1.46501 * 109.47051 * 48.35249 * 5 2 1 7 7 C 1.46499 * 119.99807 * 272.91450 * 6 5 2 8 8 C 1.50703 * 109.46819 * 274.49979 * 7 6 5 9 9 H 1.07999 * 120.00321 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99946 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00240 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99779 * 359.97438 * 10 8 7 13 13 H 1.48510 * 109.47176 * 90.00410 * 12 10 8 14 14 H 1.48504 * 109.47151 * 210.00108 * 12 10 8 15 15 H 1.48503 * 109.47460 * 330.00295 * 12 10 8 16 16 S 1.65600 * 119.99773 * 92.91254 * 6 5 2 17 17 O 1.42101 * 104.27613 * 122.99425 * 16 6 5 18 18 O 1.42098 * 104.27952 * 355.13403 * 16 6 5 19 19 C 1.81404 * 104.44823 * 239.06300 * 16 6 5 20 20 C 1.52995 * 109.47117 * 171.23433 * 19 16 6 21 21 C 1.53001 * 109.47212 * 180.02562 * 20 19 16 22 22 C 1.53774 * 113.61439 * 85.86525 * 21 20 19 23 23 C 1.54048 * 86.98508 * 140.02111 * 22 21 20 24 24 C 1.53775 * 87.07729 * 334.56686 * 23 22 21 25 25 H 1.09003 * 109.47033 * 302.03562 * 1 2 3 26 26 H 1.09000 * 109.46964 * 62.03894 * 1 2 3 27 27 H 1.08997 * 109.47052 * 182.03975 * 1 2 3 28 28 H 1.09001 * 109.47366 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46947 * 300.00549 * 3 2 1 30 30 H 1.09005 * 109.46949 * 59.99673 * 3 2 1 31 31 H 1.08994 * 109.47035 * 293.26273 * 4 2 1 32 32 H 1.09003 * 109.46253 * 53.25819 * 4 2 1 33 33 H 1.08993 * 109.47276 * 173.25529 * 4 2 1 34 34 H 1.08999 * 109.47186 * 288.35292 * 5 2 1 35 35 H 1.09002 * 109.47123 * 168.35553 * 5 2 1 36 36 H 1.08998 * 109.47585 * 34.50019 * 7 6 5 37 37 H 1.08999 * 109.47074 * 154.50424 * 7 6 5 38 38 H 0.97001 * 120.00405 * 180.02562 * 11 10 8 39 39 H 1.08999 * 109.47015 * 51.23809 * 19 16 6 40 40 H 1.08998 * 109.47211 * 291.23867 * 19 16 6 41 41 H 1.09007 * 109.46763 * 59.99983 * 20 19 16 42 42 H 1.08998 * 109.47435 * 300.00297 * 20 19 16 43 43 H 1.08997 * 112.84677 * 314.66528 * 21 20 19 44 44 H 1.09003 * 113.61285 * 254.61270 * 22 21 20 45 45 H 1.08993 * 113.61860 * 25.51668 * 22 21 20 46 46 H 1.08998 * 113.61733 * 220.02016 * 23 22 21 47 47 H 1.08998 * 113.61409 * 89.11450 * 23 22 21 48 48 H 1.09004 * 113.61825 * 270.87984 * 24 23 22 49 49 H 1.08998 * 113.68932 * 139.99075 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.3374 -1.9983 1.3968 7 6 0.0597 -2.0530 2.1114 8 6 0.3165 -2.2009 3.5890 9 1 1.3301 -2.2497 3.9588 10 6 -0.7425 -2.2750 4.4688 11 7 -0.5184 -2.4035 5.7583 12 14 -2.4956 -2.1913 3.8293 13 1 -2.9767 -3.5624 3.5228 14 1 -3.3703 -1.5790 4.8614 15 1 -2.5335 -1.3660 2.5953 16 16 1.9875 -3.3799 0.7558 17 8 2.1019 -4.2607 1.8650 18 8 3.1391 -2.9324 0.0538 19 6 0.7271 -3.9774 -0.4040 20 6 1.2981 -5.1346 -1.2260 21 6 0.2353 -5.6381 -2.2047 22 6 0.1999 -4.8590 -3.5300 23 6 -0.0245 -6.2144 -4.2268 24 6 0.6818 -6.8608 -3.0235 25 1 -0.3633 0.5451 0.8712 26 1 -0.3633 0.4818 -0.9077 27 1 -0.3633 -1.0270 0.0366 28 1 3.1301 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.7785 -1.7778 -1.1910 32 1 1.5814 -0.2818 -2.1351 33 1 3.1232 -0.6180 -1.3117 34 1 1.8561 -0.1019 2.1270 35 1 3.1101 -0.9045 1.1516 36 1 -0.4979 -1.1343 1.9298 37 1 -0.5191 -2.9056 1.7562 38 1 -1.2634 -2.4560 6.3773 39 1 0.4346 -3.1671 -1.0718 40 1 -0.1444 -4.3222 0.1524 41 1 1.5907 -5.9449 -0.5582 42 1 2.1697 -4.7897 -1.7824 43 1 -0.7442 -5.7567 -1.7416 44 1 -0.6471 -4.1780 -3.6137 45 1 1.1493 -4.3886 -3.7856 46 1 0.5234 -6.3201 -5.1631 47 1 -1.0751 -6.4906 -4.3166 48 1 1.7628 -6.9368 -3.1407 49 1 0.2247 -7.7951 -2.6975 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346462255.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:26 Heat of formation + Delta-G solvation = -86.788376 kcal Electronic energy + Delta-G solvation = -27028.965039 eV Core-core repulsion = 23503.725843 eV Total energy + Delta-G solvation = -3525.239195 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.83588 -39.45012 -38.02841 -36.87106 -35.72897 -34.16647 -34.04746 -30.06064 -28.16590 -28.02867 -27.26411 -26.47164 -26.23458 -23.71752 -22.92329 -20.37018 -20.15438 -19.38111 -19.02597 -18.42211 -17.40214 -17.31731 -16.55953 -16.35276 -15.90105 -15.60841 -15.37970 -15.09954 -15.06616 -14.62954 -14.37795 -14.04649 -13.98941 -13.59813 -13.33887 -13.26689 -13.19726 -13.05223 -12.98334 -12.81034 -12.61721 -12.56160 -12.44744 -12.41233 -12.29108 -12.22664 -11.98937 -11.78717 -11.74891 -11.61994 -11.44262 -11.36672 -11.31692 -11.03634 -10.85121 -10.72312 -9.57553 -8.23916 -6.28899 -0.63963 1.37162 1.40404 1.49782 1.81768 2.37332 2.86036 3.08158 3.33202 3.44186 3.68509 3.80431 3.86451 3.93279 3.96918 3.98935 4.09427 4.12967 4.29820 4.40360 4.56352 4.65191 4.66193 4.73039 4.75046 4.84284 4.90835 4.92425 4.93488 4.98609 5.01751 5.03059 5.05253 5.13382 5.15729 5.17335 5.18472 5.33889 5.38425 5.41250 5.44388 5.49422 5.57830 5.65289 5.66991 5.84316 6.38820 6.77473 7.32715 8.94525 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010890 B = 0.005465 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.443601 B = 5122.598200 C = 6196.227093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.134 4.134 4 C -0.136 4.136 5 C 0.133 3.867 6 N -0.983 5.983 7 C 0.224 3.776 8 C -0.535 4.535 9 H 0.022 0.978 10 C 0.003 3.997 11 N -0.953 5.953 12 Si 0.937 3.063 13 H -0.264 1.264 14 H -0.284 1.284 15 H -0.221 1.221 16 S 2.586 3.414 17 O -1.007 7.007 18 O -0.978 6.978 19 C -0.606 4.606 20 C -0.106 4.106 21 C -0.107 4.107 22 C -0.141 4.141 23 C -0.137 4.137 24 C -0.143 4.143 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.037 0.963 38 H 0.265 0.735 39 H 0.162 0.838 40 H 0.142 0.858 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.858 0.071 -23.564 23.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 C -0.191 4.191 4 C -0.194 4.194 5 C 0.008 3.992 6 N -0.820 5.820 7 C 0.100 3.900 8 C -0.575 4.575 9 H 0.040 0.960 10 C -0.194 4.194 11 N -0.594 5.594 12 Si 0.759 3.241 13 H -0.189 1.189 14 H -0.210 1.210 15 H -0.143 1.143 16 S 2.686 3.314 17 O -0.998 6.998 18 O -0.968 6.968 19 C -0.739 4.739 20 C -0.145 4.145 21 C -0.126 4.126 22 C -0.178 4.178 23 C -0.174 4.174 24 C -0.181 4.181 25 H 0.067 0.933 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.180 0.820 40 H 0.160 0.840 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.115 0.885 44 H 0.092 0.908 45 H 0.103 0.897 46 H 0.093 0.907 47 H 0.104 0.896 48 H 0.102 0.898 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.054 -0.273 -23.134 23.159 hybrid contribution -0.891 -0.156 0.973 1.329 sum -1.945 -0.430 -22.161 22.250 Atomic orbital electron populations 1.22033 0.93994 1.02191 1.01905 1.21017 0.96724 0.96416 0.94715 1.21775 1.01068 0.93809 1.02494 1.21974 1.01442 0.99026 0.96912 1.21374 0.95406 0.84067 0.98377 1.56991 1.34090 1.22213 1.68709 1.19512 0.81947 0.98906 0.89637 1.21770 0.93344 1.49596 0.92750 0.96003 1.25985 1.04508 0.94200 0.94718 1.70102 1.33390 1.52076 1.03850 0.85880 0.78060 0.80015 0.80184 1.18913 1.21016 1.14347 1.05382 0.76722 0.73661 0.75670 1.93574 1.86664 1.67735 1.51778 1.93506 1.47599 1.80281 1.75428 1.30480 1.17616 1.10789 1.15026 1.21453 0.99856 0.94976 0.98250 1.22575 0.98469 0.97592 0.93999 1.23105 1.02744 0.96984 0.94969 1.22830 1.01186 0.95967 0.97462 1.23029 1.01210 0.97215 0.96633 0.93285 0.90838 0.92425 0.92493 0.90648 0.92850 0.94395 0.90559 0.92531 0.91518 0.91301 0.91439 0.94551 0.92592 0.82011 0.84010 0.91197 0.89464 0.88504 0.90752 0.89669 0.90692 0.89616 0.89763 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 6.97 71.98 0.50 -3.03 16 2 C -0.09 -2.25 0.86 -52.18 -0.04 -2.30 16 3 C -0.13 -2.89 8.44 71.98 0.61 -2.28 16 4 C -0.14 -3.21 7.37 71.98 0.53 -2.68 16 5 C 0.13 4.66 4.68 86.38 0.40 5.06 16 6 N -0.98 -38.33 2.05 -519.84 -1.07 -39.40 16 7 C 0.22 9.74 3.04 85.63 0.26 10.00 16 8 C -0.54 -30.92 9.94 25.60 0.25 -30.66 16 9 H 0.02 1.47 8.06 -2.91 -0.02 1.45 16 10 C 0.00 0.16 5.47 84.66 0.46 0.62 16 11 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 12 Si 0.94 41.08 27.47 68.60 1.88 42.96 16 13 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 14 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 15 H -0.22 -8.15 6.54 99.48 0.65 -7.50 16 16 S 2.59 96.91 4.38 -56.49 -0.25 96.66 16 17 O -1.01 -49.96 17.94 -127.65 -2.29 -52.25 16 18 O -0.98 -36.57 14.16 -127.65 -1.81 -38.38 16 19 C -0.61 -15.32 5.32 71.98 0.38 -14.94 16 20 C -0.11 -2.36 5.05 30.59 0.15 -2.20 16 21 C -0.11 -1.87 3.64 -10.27 -0.04 -1.91 16 22 C -0.14 -2.06 7.65 31.21 0.24 -1.82 16 23 C -0.14 -1.78 8.09 31.21 0.25 -1.53 16 24 C -0.14 -2.18 7.64 31.12 0.24 -1.94 16 25 H 0.05 1.31 7.50 -2.39 -0.02 1.29 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.45 5.93 -2.39 -0.01 1.43 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.04 0.91 3.68 -2.39 -0.01 0.90 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 2.52 8.05 -2.39 -0.02 2.50 16 35 H 0.07 2.45 7.04 -2.39 -0.02 2.44 16 36 H 0.07 2.66 4.57 -2.39 -0.01 2.65 16 37 H 0.04 1.44 6.35 -2.39 -0.02 1.43 16 38 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 39 H 0.16 3.16 6.79 -2.39 -0.02 3.14 16 40 H 0.14 3.43 7.46 -2.39 -0.02 3.41 16 41 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.09 1.80 7.87 -2.39 -0.02 1.78 16 43 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.08 1.22 7.92 -2.39 -0.02 1.20 16 46 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.08 1.25 8.10 -2.39 -0.02 1.23 16 49 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -77.43 380.19 1.82 -75.61 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.84 Total: 24.93 kcal Atomic # 6 Polarization: -53.82 SS G_CDS: 4.21 Total: -49.61 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -0.77 Total: -99.92 kcal Atomic # 8 Polarization: -86.53 SS G_CDS: -4.10 Total: -90.63 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.88 Total: 42.96 kcal Atomic # 16 Polarization: 96.91 SS G_CDS: -0.25 Total: 96.66 kcal Total: -77.43 1.82 -75.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346462255.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.178 kcal (2) G-P(sol) polarization free energy of solvation -77.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds