Wall clock time and date at job start Tue Mar 31 2020 11:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47150 * 2 1 4 4 C 1.52999 * 109.47504 * 120.00329 * 2 1 3 5 5 C 1.52998 * 109.47299 * 65.00027 * 4 2 1 6 6 N 1.46496 * 109.47131 * 174.07314 * 5 4 2 7 7 C 1.46497 * 120.00350 * 86.42264 * 6 5 4 8 8 C 1.54265 * 110.03332 * 50.75211 * 7 6 5 9 9 C 1.54969 * 104.15870 * 217.13886 * 8 7 6 10 10 C 1.54880 * 102.77742 * 37.89055 * 9 8 7 11 11 C 1.53877 * 110.02873 * 293.53630 * 7 6 5 12 12 S 1.65606 * 119.99739 * 266.41695 * 6 5 4 13 13 O 1.42101 * 104.27705 * 206.07174 * 12 6 5 14 14 O 1.42098 * 104.27514 * 333.92920 * 12 6 5 15 15 C 1.81400 * 104.44707 * 90.00369 * 12 6 5 16 16 C 1.53004 * 109.46764 * 179.97438 * 15 12 6 17 17 C 1.50703 * 109.46801 * 179.97438 * 16 15 12 18 18 H 1.07993 * 120.00060 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99726 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00005 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99869 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46871 * 89.99686 * 21 19 17 23 23 H 1.48500 * 109.46785 * 209.99880 * 21 19 17 24 24 H 1.48500 * 109.46924 * 329.99821 * 21 19 17 25 25 H 1.08997 * 109.47362 * 59.99969 * 1 2 3 26 26 H 1.09003 * 109.46997 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46970 * 299.99731 * 1 2 3 28 28 H 1.09000 * 109.47356 * 240.00275 * 2 1 3 29 29 H 1.09001 * 109.47364 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47013 * 300.00244 * 3 2 1 31 31 H 1.09001 * 109.46867 * 60.00695 * 3 2 1 32 32 H 1.09003 * 109.46979 * 304.99827 * 4 2 1 33 33 H 1.08997 * 109.47224 * 184.99996 * 4 2 1 34 34 H 1.08995 * 109.47134 * 54.06728 * 5 4 2 35 35 H 1.09004 * 109.46802 * 294.07118 * 5 4 2 36 36 H 1.09002 * 110.02007 * 172.14641 * 7 6 5 37 37 H 1.08998 * 110.48691 * 335.78681 * 8 7 6 38 38 H 1.09003 * 110.48722 * 98.43157 * 8 7 6 39 39 H 1.08998 * 110.71918 * 279.57157 * 9 8 7 40 40 H 1.09001 * 110.91730 * 156.29952 * 9 8 7 41 41 H 1.09006 * 110.48569 * 203.40518 * 10 9 8 42 42 H 1.09002 * 110.60369 * 80.81940 * 10 9 8 43 43 H 1.09003 * 110.03198 * 238.56955 * 11 7 6 44 44 H 1.08995 * 110.03340 * 0.02562 * 11 7 6 45 45 H 1.08997 * 109.46765 * 299.99514 * 15 12 6 46 46 H 1.09003 * 109.47166 * 59.99954 * 15 12 6 47 47 H 1.08996 * 109.47053 * 299.99890 * 16 15 12 48 48 H 1.09003 * 109.47276 * 60.00071 * 16 15 12 49 49 H 0.97008 * 119.99715 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6354 -2.1955 1.1879 6 7 2.2423 -2.9156 2.3100 7 6 1.5620 -2.9587 3.6067 8 6 0.0974 -3.4058 3.4204 9 6 -0.6911 -2.5609 4.4530 10 6 0.0271 -1.1900 4.3938 11 6 1.5176 -1.5506 4.2256 12 16 3.6976 -3.6810 2.1126 13 8 3.6815 -4.7199 3.0820 14 8 3.7528 -3.9758 0.7236 15 6 4.9322 -2.4247 2.5464 16 6 6.3353 -3.0177 2.4025 17 6 7.3610 -1.9738 2.7623 18 1 7.0439 -0.9865 3.0638 19 6 8.7043 -2.2794 2.7065 20 7 9.0905 -3.4815 2.3388 21 14 9.9758 -0.9857 3.1532 22 1 10.2723 -1.0641 4.6062 23 1 11.2205 -1.2274 2.3802 24 1 9.4452 0.3627 2.8282 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6054 -0.2618 2.1369 33 1 3.1263 -0.6444 1.2950 34 1 1.9806 -2.6283 0.2490 35 1 0.5500 -2.2771 1.2482 36 1 2.0795 -3.6451 4.2770 37 1 -0.2428 -3.1859 2.4085 38 1 -0.0074 -4.4690 3.6366 39 1 -0.6111 -2.9963 5.4490 40 1 -1.7360 -2.4627 4.1587 41 1 -0.1294 -0.6370 5.3200 42 1 -0.3236 -0.6098 3.5403 43 1 2.0129 -1.5538 5.1967 44 1 2.0018 -0.8352 3.5610 45 1 4.8290 -1.5686 1.8798 46 1 4.7776 -2.1039 3.5766 47 1 6.4381 -3.8737 3.0693 48 1 6.4902 -3.3388 1.3724 49 1 10.0357 -3.6966 2.2999 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348103032.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:40 Heat of formation + Delta-G solvation = -105.275068 kcal Electronic energy + Delta-G solvation = -26666.376489 eV Core-core repulsion = 23140.335651 eV Total energy + Delta-G solvation = -3526.040838 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.21115 -36.96084 -36.34374 -35.41995 -34.11291 -33.86995 -31.15467 -29.47788 -28.85806 -27.28837 -26.89313 -25.59769 -23.33873 -21.59416 -20.74899 -20.09184 -20.03252 -18.47420 -17.74339 -16.60806 -16.33197 -15.54246 -15.38560 -15.16401 -14.96171 -14.55108 -14.40770 -14.01683 -13.53204 -13.40790 -13.32391 -13.09851 -12.63746 -12.51235 -12.33057 -12.22986 -11.78902 -11.74798 -11.62379 -11.54794 -11.34047 -11.20414 -11.16310 -11.10025 -11.04496 -10.98045 -10.96597 -10.84889 -10.71148 -10.44038 -10.38630 -10.30611 -10.16526 -9.72651 -9.27925 -8.70225 -8.49579 -6.11574 -4.17001 0.79858 3.03576 3.26224 3.32451 3.35128 4.29902 4.38716 4.45328 4.53872 4.57243 4.73086 4.76575 4.82748 4.85444 5.05092 5.23592 5.30596 5.32598 5.37098 5.42226 5.45011 5.46889 5.53298 5.55280 5.59012 5.62180 5.67550 5.73620 5.77165 5.78681 5.83489 5.86001 5.90535 5.96764 6.04085 6.13866 6.19227 6.20523 6.26493 6.38673 6.46174 6.53934 6.82732 7.31277 7.37403 7.81420 8.18734 8.86329 9.47660 10.99506 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012752 B = 0.004284 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.257604 B = 6534.749238 C = 7329.318363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.149 4.149 5 C 0.112 3.888 6 N -0.998 5.998 7 C 0.143 3.857 8 C -0.133 4.133 9 C -0.123 4.123 10 C -0.120 4.120 11 C -0.154 4.154 12 S 2.586 3.414 13 O -0.966 6.966 14 O -0.965 6.965 15 C -0.589 4.589 16 C 0.029 3.971 17 C -0.518 4.518 18 H 0.061 0.939 19 C 0.058 3.942 20 N -0.891 5.891 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.119 0.881 46 H 0.118 0.882 47 H 0.032 0.968 48 H 0.032 0.968 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.025 7.103 0.348 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.187 4.187 5 C -0.014 4.014 6 N -0.832 5.832 7 C 0.036 3.964 8 C -0.172 4.172 9 C -0.161 4.161 10 C -0.158 4.158 11 C -0.193 4.193 12 S 2.686 3.314 13 O -0.956 6.956 14 O -0.955 6.955 15 C -0.723 4.723 16 C -0.010 4.010 17 C -0.558 4.558 18 H 0.079 0.921 19 C -0.144 4.144 20 N -0.529 5.529 21 Si 0.726 3.274 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.050 0.950 48 H 0.050 0.950 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.791 6.045 0.015 21.652 hybrid contribution 0.959 1.358 0.483 1.731 sum -19.832 7.403 0.498 21.175 Atomic orbital electron populations 1.21890 0.95415 1.01703 1.01486 1.21088 0.95685 0.96345 0.98479 1.21838 1.01437 0.95803 1.01427 1.22446 1.01946 0.95851 0.98491 1.21446 0.99587 0.91085 0.89233 1.57797 1.38079 1.70062 1.17263 1.21553 0.93903 0.97048 0.83872 1.22742 0.94295 1.00088 1.00073 1.22470 0.98704 0.95611 0.99326 1.22302 0.95053 0.97039 1.01426 1.22908 0.97225 0.97455 1.01702 1.05750 0.74518 0.76744 0.74402 1.93521 1.85866 1.53380 1.62880 1.93518 1.85882 1.83622 1.32486 1.30546 1.14942 1.16103 1.10681 1.18954 0.86155 0.97215 0.98708 1.20992 0.90397 0.97832 1.46574 0.92085 1.25061 0.98718 0.95632 0.95027 1.69957 1.16346 1.19630 1.46941 0.86486 0.80784 0.81588 0.78525 1.20468 1.21001 1.19774 0.92955 0.92528 0.92812 0.90786 0.92351 0.92868 0.92851 0.90418 0.91328 0.89007 0.89918 0.87738 0.90527 0.91146 0.91368 0.91666 0.91854 0.91712 0.91143 0.89579 0.86292 0.86316 0.94971 0.94953 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.95 37.15 0.33 -0.82 16 2 C -0.10 -0.91 2.92 -90.62 -0.26 -1.17 16 3 C -0.15 -1.34 9.19 37.16 0.34 -1.00 16 4 C -0.15 -1.57 4.17 -26.73 -0.11 -1.68 16 5 C 0.11 1.30 4.95 -4.05 -0.02 1.28 16 6 N -1.00 -13.69 2.67 -106.12 -0.28 -13.98 16 7 C 0.14 1.72 3.30 -66.81 -0.22 1.50 16 8 C -0.13 -1.34 6.39 -25.03 -0.16 -1.50 16 9 C -0.12 -1.00 6.91 -24.70 -0.17 -1.17 16 10 C -0.12 -0.99 6.83 -25.08 -0.17 -1.16 16 11 C -0.15 -1.56 6.08 -25.61 -0.16 -1.72 16 12 S 2.59 47.96 5.42 -107.50 -0.58 47.38 16 13 O -0.97 -20.44 16.53 -57.54 -0.95 -21.39 16 14 O -0.96 -20.32 16.54 -57.54 -0.95 -21.27 16 15 C -0.59 -11.50 6.11 37.16 0.23 -11.27 16 16 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 17 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 21 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.43 6.70 -51.93 -0.35 0.08 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.74 5.60 -51.93 -0.29 0.45 16 33 H 0.07 0.81 6.72 -51.93 -0.35 0.47 16 34 H 0.09 1.19 6.84 -51.93 -0.36 0.83 16 35 H 0.08 0.80 4.53 -51.93 -0.24 0.56 16 36 H 0.10 1.40 6.81 -51.93 -0.35 1.05 16 37 H 0.08 0.73 5.66 -51.93 -0.29 0.44 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.88 4.66 -51.93 -0.24 0.64 16 45 H 0.12 2.10 6.72 -51.93 -0.35 1.75 16 46 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 47 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 383.09 15.07 5.77 5.77 Total: -1.00 -33.28 383.09 -10.90 -44.18 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -8.70 Total: 0.21 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: -0.92 Total: -31.26 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.45 Total: -39.86 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -1.90 Total: -42.66 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 47.96 SS G_CDS: -0.58 Total: 47.38 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.28 -10.90 -44.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348103032.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.094 kcal (2) G-P(sol) polarization free energy of solvation -33.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds