Wall clock time and date at job start Tue Mar 31 2020 11:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47150 * 2 1 4 4 C 1.52999 * 109.47504 * 120.00329 * 2 1 3 5 5 C 1.52998 * 109.47299 * 65.00027 * 4 2 1 6 6 N 1.46496 * 109.47131 * 174.07314 * 5 4 2 7 7 C 1.46497 * 120.00350 * 86.42264 * 6 5 4 8 8 C 1.54265 * 110.03332 * 50.75211 * 7 6 5 9 9 C 1.54969 * 104.15870 * 217.13886 * 8 7 6 10 10 C 1.54880 * 102.77742 * 37.89055 * 9 8 7 11 11 C 1.53877 * 110.02873 * 293.53630 * 7 6 5 12 12 S 1.65606 * 119.99739 * 266.41695 * 6 5 4 13 13 O 1.42101 * 104.27705 * 206.07174 * 12 6 5 14 14 O 1.42098 * 104.27514 * 333.92920 * 12 6 5 15 15 C 1.81400 * 104.44707 * 90.00369 * 12 6 5 16 16 C 1.53004 * 109.46764 * 179.97438 * 15 12 6 17 17 C 1.50703 * 109.46801 * 179.97438 * 16 15 12 18 18 H 1.07993 * 120.00060 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99726 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00005 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99869 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46871 * 89.99686 * 21 19 17 23 23 H 1.48500 * 109.46785 * 209.99880 * 21 19 17 24 24 H 1.48500 * 109.46924 * 329.99821 * 21 19 17 25 25 H 1.08997 * 109.47362 * 59.99969 * 1 2 3 26 26 H 1.09003 * 109.46997 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46970 * 299.99731 * 1 2 3 28 28 H 1.09000 * 109.47356 * 240.00275 * 2 1 3 29 29 H 1.09001 * 109.47364 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47013 * 300.00244 * 3 2 1 31 31 H 1.09001 * 109.46867 * 60.00695 * 3 2 1 32 32 H 1.09003 * 109.46979 * 304.99827 * 4 2 1 33 33 H 1.08997 * 109.47224 * 184.99996 * 4 2 1 34 34 H 1.08995 * 109.47134 * 54.06728 * 5 4 2 35 35 H 1.09004 * 109.46802 * 294.07118 * 5 4 2 36 36 H 1.09002 * 110.02007 * 172.14641 * 7 6 5 37 37 H 1.08998 * 110.48691 * 335.78681 * 8 7 6 38 38 H 1.09003 * 110.48722 * 98.43157 * 8 7 6 39 39 H 1.08998 * 110.71918 * 279.57157 * 9 8 7 40 40 H 1.09001 * 110.91730 * 156.29952 * 9 8 7 41 41 H 1.09006 * 110.48569 * 203.40518 * 10 9 8 42 42 H 1.09002 * 110.60369 * 80.81940 * 10 9 8 43 43 H 1.09003 * 110.03198 * 238.56955 * 11 7 6 44 44 H 1.08995 * 110.03340 * 0.02562 * 11 7 6 45 45 H 1.08997 * 109.46765 * 299.99514 * 15 12 6 46 46 H 1.09003 * 109.47166 * 59.99954 * 15 12 6 47 47 H 1.08996 * 109.47053 * 299.99890 * 16 15 12 48 48 H 1.09003 * 109.47276 * 60.00071 * 16 15 12 49 49 H 0.97008 * 119.99715 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6354 -2.1955 1.1879 6 7 2.2423 -2.9156 2.3100 7 6 1.5620 -2.9587 3.6067 8 6 0.0974 -3.4058 3.4204 9 6 -0.6911 -2.5609 4.4530 10 6 0.0271 -1.1900 4.3938 11 6 1.5176 -1.5506 4.2256 12 16 3.6976 -3.6810 2.1126 13 8 3.6815 -4.7199 3.0820 14 8 3.7528 -3.9758 0.7236 15 6 4.9322 -2.4247 2.5464 16 6 6.3353 -3.0177 2.4025 17 6 7.3610 -1.9738 2.7623 18 1 7.0439 -0.9865 3.0638 19 6 8.7043 -2.2794 2.7065 20 7 9.0905 -3.4815 2.3388 21 14 9.9758 -0.9857 3.1532 22 1 10.2723 -1.0641 4.6062 23 1 11.2205 -1.2274 2.3802 24 1 9.4452 0.3627 2.8282 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6054 -0.2618 2.1369 33 1 3.1263 -0.6444 1.2950 34 1 1.9806 -2.6283 0.2490 35 1 0.5500 -2.2771 1.2482 36 1 2.0795 -3.6451 4.2770 37 1 -0.2428 -3.1859 2.4085 38 1 -0.0074 -4.4690 3.6366 39 1 -0.6111 -2.9963 5.4490 40 1 -1.7360 -2.4627 4.1587 41 1 -0.1294 -0.6370 5.3200 42 1 -0.3236 -0.6098 3.5403 43 1 2.0129 -1.5538 5.1967 44 1 2.0018 -0.8352 3.5610 45 1 4.8290 -1.5686 1.8798 46 1 4.7776 -2.1039 3.5766 47 1 6.4381 -3.8737 3.0693 48 1 6.4902 -3.3388 1.3724 49 1 10.0357 -3.6966 2.2999 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348103032.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:39 Heat of formation + Delta-G solvation = -125.571334 kcal Electronic energy + Delta-G solvation = -26667.256601 eV Core-core repulsion = 23140.335651 eV Total energy + Delta-G solvation = -3526.920950 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.10387 -38.35161 -37.33738 -37.05095 -35.92369 -35.03454 -33.15805 -30.34194 -29.62092 -27.96238 -27.75730 -27.59456 -24.38377 -23.40117 -21.43843 -21.14394 -20.82693 -19.73364 -19.23441 -18.45514 -17.56446 -17.06832 -16.57222 -16.34689 -16.21593 -16.01491 -15.24726 -15.13427 -14.82669 -14.50132 -14.33122 -14.15928 -14.05659 -13.75757 -13.47250 -13.38455 -13.21324 -13.09772 -12.94959 -12.88381 -12.82413 -12.49375 -12.38744 -12.26823 -12.13930 -12.01744 -11.88974 -11.85271 -11.77255 -11.71735 -11.61587 -11.40017 -11.23995 -11.11005 -10.98461 -10.66362 -9.86093 -8.27385 -6.41807 -0.72724 1.39390 1.41518 1.52617 1.70766 2.36733 2.80810 3.05848 3.14311 3.53835 3.76513 3.91164 3.93543 3.97687 4.03282 4.08206 4.12585 4.25451 4.48601 4.53558 4.57065 4.63467 4.68072 4.69914 4.72913 4.77386 4.85454 4.89681 4.91788 5.01617 5.06698 5.13184 5.16944 5.18607 5.22895 5.23813 5.26652 5.31583 5.39891 5.44228 5.50434 5.55067 5.59640 5.63688 5.66443 5.80031 6.04131 6.71357 7.28485 8.85065 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012752 B = 0.004284 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.257604 B = 6534.749238 C = 7329.318363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.147 4.147 5 C 0.107 3.893 6 N -0.984 5.984 7 C 0.131 3.869 8 C -0.133 4.133 9 C -0.117 4.117 10 C -0.114 4.114 11 C -0.155 4.155 12 S 2.604 3.396 13 O -0.996 6.996 14 O -0.994 6.994 15 C -0.586 4.586 16 C 0.023 3.977 17 C -0.537 4.537 18 H 0.075 0.925 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.974 3.026 22 H -0.270 1.270 23 H -0.282 1.282 24 H -0.257 1.257 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.004 0.996 48 H 0.004 0.996 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.166 9.772 1.121 25.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.186 4.186 5 C -0.017 4.017 6 N -0.821 5.821 7 C 0.026 3.974 8 C -0.172 4.172 9 C -0.155 4.155 10 C -0.152 4.152 11 C -0.194 4.194 12 S 2.703 3.297 13 O -0.986 6.986 14 O -0.984 6.984 15 C -0.718 4.718 16 C -0.016 4.016 17 C -0.576 4.576 18 H 0.093 0.907 19 C -0.201 4.201 20 N -0.574 5.574 21 Si 0.797 3.203 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.181 1.181 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.130 0.870 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.156 0.844 46 H 0.157 0.843 47 H 0.022 0.978 48 H 0.022 0.978 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.931 8.723 0.791 24.547 hybrid contribution 1.544 0.489 0.230 1.636 sum -21.387 9.212 1.021 23.309 Atomic orbital electron populations 1.21867 0.93738 1.02222 1.02357 1.21089 0.97092 0.96205 0.97284 1.21834 1.00545 0.95749 1.02332 1.22446 1.01045 0.95109 0.99977 1.21680 1.00972 0.91423 0.87617 1.57424 1.35861 1.69947 1.18851 1.21834 0.94741 0.98349 0.82506 1.22773 0.92880 1.00211 1.01342 1.22459 0.99329 0.95005 0.98688 1.22296 0.93120 0.97208 1.02589 1.22916 0.99131 0.95860 1.01452 1.04886 0.75281 0.76370 0.73162 1.93475 1.86650 1.54941 1.63571 1.93473 1.86706 1.84203 1.34024 1.30447 1.11840 1.16976 1.12569 1.18799 0.90030 0.96552 0.96193 1.21479 0.91218 0.98682 1.46251 0.90676 1.26120 1.01337 0.97930 0.94738 1.70108 1.16984 1.22053 1.48285 0.85312 0.77521 0.78974 0.78457 1.19509 1.20756 1.18122 0.92360 0.92165 0.91723 0.91924 0.93779 0.92005 0.91925 0.88717 0.93042 0.90556 0.87031 0.89685 0.89673 0.91778 0.91274 0.89834 0.90690 0.90510 0.91135 0.89483 0.84379 0.84341 0.97807 0.97804 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.95 71.98 0.64 -1.18 16 2 C -0.10 -1.65 2.92 -10.79 -0.03 -1.68 16 3 C -0.15 -2.40 9.19 71.98 0.66 -1.74 16 4 C -0.15 -2.84 4.17 30.59 0.13 -2.72 16 5 C 0.11 2.36 4.95 86.38 0.43 2.78 16 6 N -0.98 -26.41 2.67 -489.66 -1.31 -27.72 16 7 C 0.13 3.01 3.30 45.72 0.15 3.16 16 8 C -0.13 -2.39 6.39 31.70 0.20 -2.18 16 9 C -0.12 -1.52 6.91 31.91 0.22 -1.30 16 10 C -0.11 -1.46 6.83 31.67 0.22 -1.24 16 11 C -0.15 -2.78 6.08 31.32 0.19 -2.59 16 12 S 2.60 99.51 5.42 -56.49 -0.31 99.21 16 13 O -1.00 -43.81 16.53 -127.65 -2.11 -45.92 16 14 O -0.99 -43.45 16.54 -127.65 -2.11 -45.56 16 15 C -0.59 -23.34 6.11 71.98 0.44 -22.90 16 16 C 0.02 1.24 4.98 29.85 0.15 1.39 16 17 C -0.54 -30.26 9.11 25.60 0.23 -30.03 16 18 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 19 C 0.00 -0.17 5.46 84.66 0.46 0.30 16 20 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 21 Si 0.97 43.62 29.54 68.60 2.03 45.65 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.71 6.70 -2.39 -0.02 0.70 16 27 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.09 1.51 5.60 -2.39 -0.01 1.49 16 33 H 0.05 1.17 6.72 -2.39 -0.02 1.16 16 34 H 0.08 1.95 6.84 -2.39 -0.02 1.94 16 35 H 0.11 1.83 4.53 -2.38 -0.01 1.82 16 36 H 0.09 2.29 6.81 -2.39 -0.02 2.28 16 37 H 0.08 1.37 5.66 -2.39 -0.01 1.36 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.09 1.55 4.66 -2.39 -0.01 1.54 16 45 H 0.14 4.89 6.72 -2.39 -0.02 4.88 16 46 H 0.14 4.87 8.14 -2.39 -0.02 4.86 16 47 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 48 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 49 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -74.06 383.09 1.48 -72.58 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.91 Total: 19.02 kcal Atomic # 6 Polarization: -64.01 SS G_CDS: 4.09 Total: -59.92 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -1.02 Total: -85.06 kcal Atomic # 8 Polarization: -87.26 SS G_CDS: -4.22 Total: -91.48 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 99.51 SS G_CDS: -0.31 Total: 99.21 kcal Total: -74.06 1.48 -72.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348103032.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.991 kcal (2) G-P(sol) polarization free energy of solvation -74.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds