Wall clock time and date at job start Tue Mar 31 2020 11:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99563 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00432 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47282 * 89.99593 * 9 7 5 11 11 H 1.48498 * 109.47211 * 210.00040 * 9 7 5 12 12 H 1.48506 * 109.46856 * 330.00220 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46901 * 109.46769 * 299.99531 * 13 2 1 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 2 16 16 H 1.09003 * 109.46871 * 35.00433 * 15 14 13 17 17 C 1.52994 * 109.47113 * 275.00325 * 15 14 13 18 18 C 1.53003 * 109.47132 * 180.02562 * 17 15 14 19 19 C 1.52994 * 109.47255 * 59.99555 * 18 17 15 20 20 C 1.52998 * 109.47292 * 299.99919 * 19 18 17 21 21 C 1.52999 * 109.46734 * 60.00379 * 20 19 18 22 22 H 1.09002 * 109.47629 * 59.99985 * 21 20 19 23 23 S 1.81399 * 109.47080 * 179.97438 * 21 20 19 24 24 C 1.81401 * 101.92066 * 304.99950 * 23 21 20 25 25 O 1.42101 * 108.57798 * 59.48683 * 23 21 20 26 26 O 1.42098 * 108.57931 * 190.51159 * 23 21 20 27 27 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 28 28 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 29 29 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 32 32 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 33 33 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 35 35 H 0.97000 * 119.99425 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 37 37 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 38 38 H 1.00899 * 111.00283 * 303.95539 * 14 13 2 39 39 H 1.09003 * 109.47340 * 299.99821 * 17 15 14 40 40 H 1.08995 * 109.47731 * 59.99955 * 17 15 14 41 41 H 1.09004 * 109.46635 * 299.99343 * 18 17 15 42 42 H 1.09005 * 109.46997 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.46915 * 180.02562 * 19 18 17 44 44 H 1.08994 * 109.47202 * 60.00773 * 19 18 17 45 45 H 1.09004 * 109.47173 * 300.00565 * 20 19 18 46 46 H 1.09005 * 109.47125 * 179.97438 * 20 19 18 47 47 H 1.08993 * 109.47013 * 60.00384 * 24 23 21 48 48 H 1.09001 * 109.47074 * 180.02562 * 24 23 21 49 49 H 1.08997 * 109.46781 * 299.99812 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 2.6278 -1.5504 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 2.2273 1.4412 -5.6608 11 1 1.0841 -0.5794 -6.3617 12 1 -0.0593 1.0370 -4.9615 13 6 2.0401 -0.7213 1.2492 14 7 1.5504 -0.0288 2.4486 15 6 2.0220 -0.6947 3.6703 16 1 3.0241 -1.0904 3.5047 17 6 1.0731 -1.8412 4.0249 18 6 1.5638 -2.5343 5.2976 19 6 1.5970 -1.5255 6.4473 20 6 2.5460 -0.3790 6.0927 21 6 2.0551 0.3141 4.8201 22 1 1.0530 0.7099 4.9852 23 16 3.1798 1.6740 4.4000 24 6 3.1819 2.6453 5.9320 25 8 4.4814 1.1398 4.2008 26 8 2.5844 2.4525 3.3711 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1299 -0.7209 -1.2496 34 1 1.6766 -1.7490 -1.2493 35 1 2.8627 -1.8813 -4.7337 36 1 1.6767 -1.7490 1.2492 37 1 3.1301 -0.7209 1.2494 38 1 1.8199 0.9435 2.4401 39 1 0.0710 -1.4455 4.1905 40 1 1.0492 -2.5597 3.2056 41 1 2.5660 -2.9300 5.1324 42 1 0.8880 -3.3515 5.5500 43 1 1.9470 -2.0192 7.3539 44 1 0.5949 -1.1299 6.6126 45 1 3.5481 -0.7747 5.9275 46 1 2.5692 0.3400 6.9117 47 1 3.5456 2.0278 6.7532 48 1 3.8329 3.5113 5.8122 49 1 2.1682 2.9808 6.1508 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348248533.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:26 Heat of formation + Delta-G solvation = -94.830359 kcal Electronic energy + Delta-G solvation = -26667.281557 eV Core-core repulsion = 23141.693635 eV Total energy + Delta-G solvation = -3525.587922 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.30783 -37.40714 -36.94331 -36.23803 -33.94190 -32.11173 -31.66586 -29.67248 -29.04597 -26.75197 -26.17587 -25.06728 -23.45969 -22.73079 -21.48473 -20.22867 -19.09981 -17.83319 -17.20379 -16.66467 -16.14088 -16.10322 -15.59556 -14.80088 -14.71485 -14.46633 -14.36027 -14.02828 -13.66790 -13.55830 -13.46324 -13.07171 -12.78976 -12.54168 -12.35958 -12.18923 -12.16762 -12.11152 -11.89183 -11.82130 -11.50022 -11.42127 -11.23642 -10.93867 -10.84623 -10.77775 -10.68372 -10.53041 -10.35904 -10.24051 -10.04627 -9.94994 -9.56401 -8.91126 -8.73793 -8.23501 -8.15056 -5.88282 -3.87666 -0.31172 2.41273 3.32959 3.39466 3.45454 3.48970 3.60348 4.00072 4.12780 4.42483 4.49249 4.52340 4.58367 4.64090 4.75390 4.97146 4.98608 5.14052 5.19632 5.23472 5.39146 5.47600 5.50820 5.58806 5.74202 5.79943 5.81599 5.88410 5.92832 6.09448 6.13700 6.26673 6.37584 6.46123 6.69174 6.80974 6.92044 6.97311 7.23417 7.34141 7.37312 7.46048 7.66552 7.79788 7.95533 8.12644 8.57858 9.17595 9.74550 11.23562 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019715 B = 0.003540 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.876768 B = 7907.572921 C = 8715.795594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C -0.136 4.136 4 C 0.033 3.967 5 C -0.504 4.504 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.067 3.933 14 N -0.699 5.699 15 C 0.104 3.896 16 H 0.059 0.941 17 C -0.098 4.098 18 C -0.124 4.124 19 C -0.110 4.110 20 C -0.108 4.108 21 C -0.569 4.569 22 H 0.146 0.854 23 S 2.399 3.601 24 C -0.658 4.658 25 O -0.932 6.932 26 O -0.926 6.926 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.013 0.987 34 H 0.015 0.985 35 H 0.258 0.742 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.350 0.650 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.129 0.871 48 H 0.129 0.871 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.331 3.241 26.396 26.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.193 4.193 4 C -0.004 4.004 5 C -0.543 4.543 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.061 4.061 14 N -0.340 5.340 15 C -0.007 4.007 16 H 0.077 0.923 17 C -0.137 4.137 18 C -0.162 4.162 19 C -0.148 4.148 20 C -0.147 4.147 21 C -0.679 4.679 22 H 0.164 0.836 23 S 2.582 3.418 24 C -0.807 4.807 25 O -0.930 6.930 26 O -0.921 6.921 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.032 0.968 34 H 0.033 0.967 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.177 0.823 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.102 0.898 46 H 0.094 0.906 47 H 0.148 0.852 48 H 0.148 0.852 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.369 3.059 25.461 25.681 hybrid contribution 0.246 0.597 -0.202 0.676 sum -1.123 3.656 25.259 25.547 Atomic orbital electron populations 1.21600 0.94978 1.00456 1.00273 1.20639 0.95916 0.95250 0.94114 1.21837 0.99853 0.96580 1.01072 1.19135 0.95983 0.95136 0.90170 1.21257 1.30566 1.11841 0.90589 0.92233 1.25013 0.95485 0.95134 0.99007 1.69975 1.37432 1.23298 1.23170 0.86663 0.79241 0.79396 0.83104 1.20849 1.21446 1.19919 1.22221 0.96538 0.98271 0.89089 1.60797 1.64619 1.07715 1.00844 1.21273 0.98791 0.93451 0.87207 0.92282 1.21465 0.99032 0.96195 0.97025 1.21600 1.01870 0.97847 0.94902 1.21448 0.99400 0.95637 0.98343 1.21485 1.01009 0.98928 0.93282 1.30351 1.16790 1.15534 1.05257 0.83563 1.08645 0.77052 0.77996 0.78087 1.30298 1.11765 1.15837 1.22814 1.93611 1.36179 1.78697 1.84466 1.93585 1.78388 1.68540 1.51624 0.93848 0.92628 0.94204 0.94173 0.91742 0.93650 0.96840 0.96658 0.93251 0.91141 0.95491 0.82311 0.90891 0.90925 0.91766 0.91464 0.91422 0.91434 0.89782 0.90570 0.85225 0.85193 0.85139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.06 37.16 0.30 -2.07 16 2 C -0.06 -1.27 0.60 -154.51 -0.09 -1.37 16 3 C -0.14 -2.91 7.89 37.16 0.29 -2.62 16 4 C 0.03 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.50 -14.32 7.65 -34.44 -0.26 -14.59 16 6 H 0.06 1.65 5.68 -52.48 -0.30 1.35 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.55 13.29 55.43 0.74 -26.82 16 9 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.07 1.26 4.45 -3.82 -0.02 1.25 16 14 N -0.70 -11.06 5.52 -106.72 -0.59 -11.64 16 15 C 0.10 1.29 1.96 -67.71 -0.13 1.15 16 16 H 0.06 0.79 7.80 -51.93 -0.40 0.38 16 17 C -0.10 -1.06 5.43 -26.73 -0.15 -1.20 16 18 C -0.12 -1.02 5.92 -26.73 -0.16 -1.17 16 19 C -0.11 -0.70 5.92 -26.74 -0.16 -0.85 16 20 C -0.11 -0.70 4.91 -26.73 -0.13 -0.83 16 21 C -0.57 -5.05 2.27 -26.73 -0.06 -5.11 16 22 H 0.15 1.01 8.14 -51.92 -0.42 0.59 16 23 S 2.40 25.03 4.59 -107.50 -0.49 24.54 16 24 C -0.66 -3.56 10.01 101.05 1.01 -2.55 16 25 O -0.93 -13.12 18.06 -57.83 -1.04 -14.16 16 26 O -0.93 -13.17 15.43 -57.83 -0.89 -14.06 16 27 H 0.04 0.80 7.60 -51.93 -0.39 0.41 16 28 H 0.05 1.21 6.62 -51.93 -0.34 0.86 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.44 6.62 -51.93 -0.34 1.09 16 32 H 0.04 0.89 6.45 -51.93 -0.33 0.56 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.07 1.29 7.44 -51.93 -0.39 0.90 16 37 H 0.03 0.52 8.05 -51.93 -0.42 0.11 16 38 H 0.35 5.72 3.06 -39.29 -0.12 5.60 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.87 7.45 -51.93 -0.39 0.49 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.25 6.39 -51.93 -0.33 -0.08 16 47 H 0.13 0.42 6.77 -51.93 -0.35 0.06 16 48 H 0.13 0.65 8.14 -51.92 -0.42 0.22 16 49 H 0.13 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 376.41 15.07 5.67 5.67 Total: -1.00 -35.47 376.41 -10.14 -45.61 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -8.75 Total: 1.40 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 0.23 Total: -27.73 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.15 Total: -38.46 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -1.94 Total: -28.23 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 25.03 SS G_CDS: -0.49 Total: 24.54 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.47 -10.14 -45.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348248533.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.221 kcal (2) G-P(sol) polarization free energy of solvation -35.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds