Wall clock time and date at job start Tue Mar 31 2020 11:32:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52996 * 109.47346 * 2 1
4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3
5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1
6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2
7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2
8 8 N 1.31519 * 119.99563 * 359.97438 * 7 5 4
9 9 Si 1.86800 * 120.00432 * 180.02562 * 7 5 4
10 10 H 1.48508 * 109.47282 * 89.99593 * 9 7 5
11 11 H 1.48498 * 109.47211 * 210.00040 * 9 7 5
12 12 H 1.48506 * 109.46856 * 330.00220 * 9 7 5
13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3
14 14 N 1.46901 * 109.46769 * 299.99531 * 13 2 1
15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 2
16 16 H 1.09003 * 109.46871 * 35.00433 * 15 14 13
17 17 C 1.52994 * 109.47113 * 275.00325 * 15 14 13
18 18 C 1.53003 * 109.47132 * 180.02562 * 17 15 14
19 19 C 1.52994 * 109.47255 * 59.99555 * 18 17 15
20 20 C 1.52998 * 109.47292 * 299.99919 * 19 18 17
21 21 C 1.52999 * 109.46734 * 60.00379 * 20 19 18
22 22 H 1.09002 * 109.47629 * 59.99985 * 21 20 19
23 23 S 1.81399 * 109.47080 * 179.97438 * 21 20 19
24 24 C 1.81401 * 101.92066 * 304.99950 * 23 21 20
25 25 O 1.42101 * 108.57798 * 59.48683 * 23 21 20
26 26 O 1.42098 * 108.57931 * 190.51159 * 23 21 20
27 27 H 1.09000 * 109.46986 * 299.99746 * 1 2 3
28 28 H 1.08993 * 109.47662 * 59.99968 * 1 2 3
29 29 H 1.09002 * 109.47075 * 180.02562 * 1 2 3
30 30 H 1.08992 * 109.47554 * 180.02562 * 3 2 1
31 31 H 1.09004 * 109.47108 * 300.00289 * 3 2 1
32 32 H 1.09000 * 109.46870 * 60.00183 * 3 2 1
33 33 H 1.09001 * 109.47109 * 179.97438 * 4 2 1
34 34 H 1.09002 * 109.47508 * 299.99876 * 4 2 1
35 35 H 0.97000 * 119.99425 * 180.02562 * 8 7 5
36 36 H 1.09002 * 109.47398 * 59.99826 * 13 2 1
37 37 H 1.09001 * 109.47194 * 180.02562 * 13 2 1
38 38 H 1.00899 * 111.00283 * 303.95539 * 14 13 2
39 39 H 1.09003 * 109.47340 * 299.99821 * 17 15 14
40 40 H 1.08995 * 109.47731 * 59.99955 * 17 15 14
41 41 H 1.09004 * 109.46635 * 299.99343 * 18 17 15
42 42 H 1.09005 * 109.46997 * 180.02562 * 18 17 15
43 43 H 1.09001 * 109.46915 * 180.02562 * 19 18 17
44 44 H 1.08994 * 109.47202 * 60.00773 * 19 18 17
45 45 H 1.09004 * 109.47173 * 300.00565 * 20 19 18
46 46 H 1.09005 * 109.47125 * 179.97438 * 20 19 18
47 47 H 1.08993 * 109.47013 * 60.00384 * 24 23 21
48 48 H 1.09001 * 109.47074 * 180.02562 * 24 23 21
49 49 H 1.08997 * 109.46781 * 299.99812 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0399 -0.7213 -1.2493
5 6 1.5376 -0.0109 -2.4797
6 1 0.9164 0.8671 -2.3806
7 6 1.8710 -0.4816 -3.7320
8 7 2.6278 -1.5504 -3.8527
9 14 1.2489 0.3994 -5.2572
10 1 2.2273 1.4412 -5.6608
11 1 1.0841 -0.5794 -6.3617
12 1 -0.0593 1.0370 -4.9615
13 6 2.0401 -0.7213 1.2492
14 7 1.5504 -0.0288 2.4486
15 6 2.0220 -0.6947 3.6703
16 1 3.0241 -1.0904 3.5047
17 6 1.0731 -1.8412 4.0249
18 6 1.5638 -2.5343 5.2976
19 6 1.5970 -1.5255 6.4473
20 6 2.5460 -0.3790 6.0927
21 6 2.0551 0.3141 4.8201
22 1 1.0530 0.7099 4.9852
23 16 3.1798 1.6740 4.4000
24 6 3.1819 2.6453 5.9320
25 8 4.4814 1.1398 4.2008
26 8 2.5844 2.4525 3.3711
27 1 -0.3633 0.5138 0.8900
28 1 -0.3634 0.5138 -0.8899
29 1 -0.3633 -1.0277 0.0005
30 1 3.1300 1.4425 -0.0005
31 1 1.6767 1.9563 -0.8900
32 1 1.6768 1.9562 0.8900
33 1 3.1299 -0.7209 -1.2496
34 1 1.6766 -1.7490 -1.2493
35 1 2.8627 -1.8813 -4.7337
36 1 1.6767 -1.7490 1.2492
37 1 3.1301 -0.7209 1.2494
38 1 1.8199 0.9435 2.4401
39 1 0.0710 -1.4455 4.1905
40 1 1.0492 -2.5597 3.2056
41 1 2.5660 -2.9300 5.1324
42 1 0.8880 -3.3515 5.5500
43 1 1.9470 -2.0192 7.3539
44 1 0.5949 -1.1299 6.6126
45 1 3.5481 -0.7747 5.9275
46 1 2.5692 0.3400 6.9117
47 1 3.5456 2.0278 6.7532
48 1 3.8329 3.5113 5.8122
49 1 2.1682 2.9808 6.1508
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000348248533.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:32:26
Heat of formation + Delta-G solvation = -94.830359 kcal
Electronic energy + Delta-G solvation = -26667.281557 eV
Core-core repulsion = 23141.693635 eV
Total energy + Delta-G solvation = -3525.587922 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.181 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-39.30783 -37.40714 -36.94331 -36.23803 -33.94190 -32.11173 -31.66586 -29.67248
-29.04597 -26.75197 -26.17587 -25.06728 -23.45969 -22.73079 -21.48473 -20.22867
-19.09981 -17.83319 -17.20379 -16.66467 -16.14088 -16.10322 -15.59556 -14.80088
-14.71485 -14.46633 -14.36027 -14.02828 -13.66790 -13.55830 -13.46324 -13.07171
-12.78976 -12.54168 -12.35958 -12.18923 -12.16762 -12.11152 -11.89183 -11.82130
-11.50022 -11.42127 -11.23642 -10.93867 -10.84623 -10.77775 -10.68372 -10.53041
-10.35904 -10.24051 -10.04627 -9.94994 -9.56401 -8.91126 -8.73793 -8.23501
-8.15056 -5.88282 -3.87666 -0.31172 2.41273 3.32959 3.39466 3.45454
3.48970 3.60348 4.00072 4.12780 4.42483 4.49249 4.52340 4.58367
4.64090 4.75390 4.97146 4.98608 5.14052 5.19632 5.23472 5.39146
5.47600 5.50820 5.58806 5.74202 5.79943 5.81599 5.88410 5.92832
6.09448 6.13700 6.26673 6.37584 6.46123 6.69174 6.80974 6.92044
6.97311 7.23417 7.34141 7.37312 7.46048 7.66552 7.79788 7.95533
8.12644 8.57858 9.17595 9.74550 11.23562
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.019715 B = 0.003540 C = 0.003212
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1419.876768 B = 7907.572921 C = 8715.795594
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.059 4.059
3 C -0.136 4.136
4 C 0.033 3.967
5 C -0.504 4.504
6 H 0.060 0.940
7 C 0.054 3.946
8 N -0.899 5.899
9 Si 0.888 3.112
10 H -0.282 1.282
11 H -0.288 1.288
12 H -0.274 1.274
13 C 0.067 3.933
14 N -0.699 5.699
15 C 0.104 3.896
16 H 0.059 0.941
17 C -0.098 4.098
18 C -0.124 4.124
19 C -0.110 4.110
20 C -0.108 4.108
21 C -0.569 4.569
22 H 0.146 0.854
23 S 2.399 3.601
24 C -0.658 4.658
25 O -0.932 6.932
26 O -0.926 6.926
27 H 0.042 0.958
28 H 0.055 0.945
29 H 0.039 0.961
30 H 0.039 0.961
31 H 0.064 0.936
32 H 0.045 0.955
33 H 0.013 0.987
34 H 0.015 0.985
35 H 0.258 0.742
36 H 0.070 0.930
37 H 0.027 0.973
38 H 0.350 0.650
39 H 0.072 0.928
40 H 0.072 0.928
41 H 0.064 0.936
42 H 0.067 0.933
43 H 0.067 0.933
44 H 0.067 0.933
45 H 0.084 0.916
46 H 0.076 0.924
47 H 0.129 0.871
48 H 0.129 0.871
49 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.331 3.241 26.396 26.628
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C -0.059 4.059
3 C -0.193 4.193
4 C -0.004 4.004
5 C -0.543 4.543
6 H 0.078 0.922
7 C -0.146 4.146
8 N -0.539 5.539
9 Si 0.716 3.284
10 H -0.208 1.208
11 H -0.214 1.214
12 H -0.199 1.199
13 C -0.061 4.061
14 N -0.340 5.340
15 C -0.007 4.007
16 H 0.077 0.923
17 C -0.137 4.137
18 C -0.162 4.162
19 C -0.148 4.148
20 C -0.147 4.147
21 C -0.679 4.679
22 H 0.164 0.836
23 S 2.582 3.418
24 C -0.807 4.807
25 O -0.930 6.930
26 O -0.921 6.921
27 H 0.062 0.938
28 H 0.074 0.926
29 H 0.058 0.942
30 H 0.058 0.942
31 H 0.083 0.917
32 H 0.064 0.936
33 H 0.032 0.968
34 H 0.033 0.967
35 H 0.067 0.933
36 H 0.089 0.911
37 H 0.045 0.955
38 H 0.177 0.823
39 H 0.091 0.909
40 H 0.091 0.909
41 H 0.082 0.918
42 H 0.085 0.915
43 H 0.086 0.914
44 H 0.086 0.914
45 H 0.102 0.898
46 H 0.094 0.906
47 H 0.148 0.852
48 H 0.148 0.852
49 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -1.369 3.059 25.461 25.681
hybrid contribution 0.246 0.597 -0.202 0.676
sum -1.123 3.656 25.259 25.547
Atomic orbital electron populations
1.21600 0.94978 1.00456 1.00273 1.20639 0.95916 0.95250 0.94114
1.21837 0.99853 0.96580 1.01072 1.19135 0.95983 0.95136 0.90170
1.21257 1.30566 1.11841 0.90589 0.92233 1.25013 0.95485 0.95134
0.99007 1.69975 1.37432 1.23298 1.23170 0.86663 0.79241 0.79396
0.83104 1.20849 1.21446 1.19919 1.22221 0.96538 0.98271 0.89089
1.60797 1.64619 1.07715 1.00844 1.21273 0.98791 0.93451 0.87207
0.92282 1.21465 0.99032 0.96195 0.97025 1.21600 1.01870 0.97847
0.94902 1.21448 0.99400 0.95637 0.98343 1.21485 1.01009 0.98928
0.93282 1.30351 1.16790 1.15534 1.05257 0.83563 1.08645 0.77052
0.77996 0.78087 1.30298 1.11765 1.15837 1.22814 1.93611 1.36179
1.78697 1.84466 1.93585 1.78388 1.68540 1.51624 0.93848 0.92628
0.94204 0.94173 0.91742 0.93650 0.96840 0.96658 0.93251 0.91141
0.95491 0.82311 0.90891 0.90925 0.91766 0.91464 0.91422 0.91434
0.89782 0.90570 0.85225 0.85193 0.85139
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.37 8.06 37.16 0.30 -2.07 16
2 C -0.06 -1.27 0.60 -154.51 -0.09 -1.37 16
3 C -0.14 -2.91 7.89 37.16 0.29 -2.62 16
4 C 0.03 0.88 4.04 -27.88 -0.11 0.77 16
5 C -0.50 -14.32 7.65 -34.44 -0.26 -14.59 16
6 H 0.06 1.65 5.68 -52.48 -0.30 1.35 16
7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16
8 N -0.90 -27.55 13.29 55.43 0.74 -26.82 16
9 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16
10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16
11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16
13 C 0.07 1.26 4.45 -3.82 -0.02 1.25 16
14 N -0.70 -11.06 5.52 -106.72 -0.59 -11.64 16
15 C 0.10 1.29 1.96 -67.71 -0.13 1.15 16
16 H 0.06 0.79 7.80 -51.93 -0.40 0.38 16
17 C -0.10 -1.06 5.43 -26.73 -0.15 -1.20 16
18 C -0.12 -1.02 5.92 -26.73 -0.16 -1.17 16
19 C -0.11 -0.70 5.92 -26.74 -0.16 -0.85 16
20 C -0.11 -0.70 4.91 -26.73 -0.13 -0.83 16
21 C -0.57 -5.05 2.27 -26.73 -0.06 -5.11 16
22 H 0.15 1.01 8.14 -51.92 -0.42 0.59 16
23 S 2.40 25.03 4.59 -107.50 -0.49 24.54 16
24 C -0.66 -3.56 10.01 101.05 1.01 -2.55 16
25 O -0.93 -13.12 18.06 -57.83 -1.04 -14.16 16
26 O -0.93 -13.17 15.43 -57.83 -0.89 -14.06 16
27 H 0.04 0.80 7.60 -51.93 -0.39 0.41 16
28 H 0.05 1.21 6.62 -51.93 -0.34 0.86 16
29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16
30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16
31 H 0.06 1.44 6.62 -51.93 -0.34 1.09 16
32 H 0.04 0.89 6.45 -51.93 -0.33 0.56 16
33 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16
34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
36 H 0.07 1.29 7.44 -51.93 -0.39 0.90 16
37 H 0.03 0.52 8.05 -51.93 -0.42 0.11 16
38 H 0.35 5.72 3.06 -39.29 -0.12 5.60 16
39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16
40 H 0.07 0.87 7.45 -51.93 -0.39 0.49 16
41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
45 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16
46 H 0.08 0.25 6.39 -51.93 -0.33 -0.08 16
47 H 0.13 0.42 6.77 -51.93 -0.35 0.06 16
48 H 0.13 0.65 8.14 -51.92 -0.42 0.22 16
49 H 0.13 0.44 8.14 -51.93 -0.42 0.01 16
LS Contribution 376.41 15.07 5.67 5.67
Total: -1.00 -35.47 376.41 -10.14 -45.61
By element:
Atomic # 1 Polarization: 10.15 SS G_CDS: -8.75 Total: 1.40 kcal
Atomic # 6 Polarization: -27.96 SS G_CDS: 0.23 Total: -27.73 kcal
Atomic # 7 Polarization: -38.61 SS G_CDS: 0.15 Total: -38.46 kcal
Atomic # 8 Polarization: -26.29 SS G_CDS: -1.94 Total: -28.23 kcal
Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal
Atomic # 16 Polarization: 25.03 SS G_CDS: -0.49 Total: 24.54 kcal
Total LS contribution 5.67 Total: 5.67 kcal
Total: -35.47 -10.14 -45.61 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000348248533.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.221 kcal
(2) G-P(sol) polarization free energy of solvation -35.466 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.688 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.609 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.830 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds